View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8891_low_23 (Length: 352)
Name: NF8891_low_23
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8891_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 85 - 178
Target Start/End: Complemental strand, 14002310 - 14002218
Alignment:
| Q |
85 |
tctataggatcaaatgataaacttgacatcaaaatacaaatacaaattagatatcaaacaaagttcgcaatatatttatatggtattgatacac |
178 |
Q |
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| T |
14002310 |
tctatatgagcaaatgataa-cttgacatcaaaatacaaatacaaattagacatcaaacaaagttcgcaatatatttatacggtattgatacac |
14002218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 243 - 346
Target Start/End: Complemental strand, 14002154 - 14002051
Alignment:
| Q |
243 |
aaaccatctagccactgtcgtctgcaactcacggtctctcgtttgatctaaccaccaccagccaacttctccctccttgctgcctcctgttgatgtccat |
342 |
Q |
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| T |
14002154 |
aaaccatccagccaccgtcgtccgcaactcacgatctcttctttgatctaaccaccgccagcctacttctccctccttgctgcctcctgttgctgtccaa |
14002055 |
T |
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| Q |
343 |
ctca |
346 |
Q |
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|||| |
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| T |
14002054 |
ctca |
14002051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 14002262 - 14002211
Alignment:
| Q |
12 |
gacatcaaacaaagttcgcaatatagttatacggtattgatacaccagtttt |
63 |
Q |
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| T |
14002262 |
gacatcaaacaaagttcgcaatatatttatacggtattgatacaccagtttt |
14002211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 23885844 - 23885884
Alignment:
| Q |
104 |
aacttgacatcaaaatacaaatacaaattagatatcaaaca |
144 |
Q |
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| T |
23885844 |
aacttgacatcaaaatacaaacacaaattagacatcaaaca |
23885884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 56398541 - 56398501
Alignment:
| Q |
104 |
aacttgacatcaaaatacaaatacaaattagatatcaaaca |
144 |
Q |
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||||||||||||||||||||| |||||||||| |||||||| |
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| T |
56398541 |
aacttgacatcaaaatacaaacacaaattagacatcaaaca |
56398501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 6284572 - 6284612
Alignment:
| Q |
104 |
aacttgacatcaaaatacaaatacaaattagatatcaaaca |
144 |
Q |
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||||||||||||||||||||| |||||||||| |||||||| |
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| T |
6284572 |
aacttgacatcaaaatacaaacacaaattagacatcaaaca |
6284612 |
T |
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