View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8891_low_26 (Length: 321)
Name: NF8891_low_26
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8891_low_26 |
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| [»] scaffold0532 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 33721715 - 33722023
Alignment:
| Q |
1 |
tggccttttgccgttcaggtttcttcatggcttcttgatagctttgcggttcttcattgttatgaattgatgcaagatatgcttgatgcctgcgagaata |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33721715 |
tggccttttgccattcaggtttcttcatggcttcttgatagctttgcggttcttcattgttatgaattgatgcaagatatgcttgatgcctgcgagaata |
33721814 |
T |
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| Q |
101 |
gcaatcattattgatgaagttagtgatagggtagactttacctgaggagtgtgaatgagtcggggccatgctcatggggttcttgtgcgctgcatgacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33721815 |
gcaatcattattgatgaagttagtgatagggtagactttacctgaggagtgtgaatgagtcggggccatgctcatggggttcttgtgcgctgcatgacaa |
33721914 |
T |
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| Q |
201 |
tagtagtctccaagataggcgggtggttttcgtatgcgtgatggaagatctgtctccccctcattttgcatttcaatctccattggattgatttcccctt |
300 |
Q |
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|||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33721915 |
tagtagtctccaagataggcaggtggttttcgtgtgcgtggtggaagatctgtctccccctcattttgcatttcaatctccattggattgatttcccctt |
33722014 |
T |
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| Q |
301 |
cattatgat |
309 |
Q |
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|||| |||| |
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| T |
33722015 |
cattctgat |
33722023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 33795208 - 33795516
Alignment:
| Q |
1 |
tggccttttgccgttcaggtttcttcatggcttcttgatagctttgcggttcttcattgttatgaattgatgcaagatatgcttgatgcctgcgagaata |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33795208 |
tggccttttgccattcaggtttcttcatggcttcttgatagctttgcggttcttcattgttatgaattgatgcaagatatgcttgatgcctgcgagaata |
33795307 |
T |
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| Q |
101 |
gcaatcattattgatgaagttagtgatagggtagactttacctgaggagtgtgaatgagtcggggccatgctcatggggttcttgtgcgctgcatgacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33795308 |
gcaatcattattgatgaagttagtgatagggtagactttacctgaggagtgtgaatgagtcgaggccatgctcatggggttcttgtgcgctgcatgacaa |
33795407 |
T |
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| Q |
201 |
tagtagtctccaagataggcgggtggttttcgtatgcgtgatggaagatctgtctccccctcattttgcatttcaatctccattggattgatttcccctt |
300 |
Q |
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|||||||||||||||||||| |||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33795408 |
tagtagtctccaagataggcaggtggttttcatgtgcgtggtggaagatctgtctccccctcattttgcatttcaatctccattggattgatttcccctt |
33795507 |
T |
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| Q |
301 |
cattatgat |
309 |
Q |
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|||| |||| |
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| T |
33795508 |
cattctgat |
33795516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0532 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0532
Description:
Target: scaffold0532; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 163
Target Start/End: Original strand, 212 - 304
Alignment:
| Q |
71 |
tgcaagatatgcttgatgcctgcgagaatagcaatcattattgatgaagttagtgatagggtagactttacctgaggagtgtgaatgagtcgg |
163 |
Q |
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||||||||| ||||||| || ||||| | ||||||| | | | ||| ||||||||||| |||||||||||||| |||| ||||||| |||| |
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| T |
212 |
tgcaagataagcttgatatttgggagaaaaacaatcataactcaagaaattagtgataggatagactttacctgaagagtttgaatgattcgg |
304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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