View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8891_low_29 (Length: 316)

Name: NF8891_low_29
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8891_low_29
NF8891_low_29
[»] chr5 (5 HSPs)
chr5 (18-184)||(34452165-34452331)
chr5 (185-316)||(34451995-34452127)
chr5 (252-301)||(18551501-18551550)
chr5 (253-301)||(27731606-27731654)
chr5 (253-301)||(41015016-41015064)
[»] chr3 (1 HSPs)
chr3 (33-153)||(38410043-38410163)
[»] chr8 (1 HSPs)
chr8 (61-163)||(42388261-42388363)
[»] chr6 (3 HSPs)
chr6 (61-163)||(3189794-3189896)
chr6 (247-299)||(2457210-2457262)
chr6 (253-301)||(29404958-29405006)
[»] chr2 (1 HSPs)
chr2 (252-301)||(28044727-28044776)
[»] chr1 (1 HSPs)
chr1 (225-301)||(11766191-11766265)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 34452331 - 34452165
Alignment:
Q  18 agcaaatggtgaaaaagaaatggatgtagcttttcatccagctggttttgaaccatgggattttactatgtcataccttcttaaagaagtcagctctttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34452331 agcaaatggtgaaaaagaaatggatgtagcttttcatccagctggttttgaaccatgggattttactatgtcataccttcttaaagaagtcatctctttg 34452232  T
Q  118 caagagttctatgggattgtgtttgttggtggattttgttatgccggtcaacttgattctgcaattg 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34452231 caagagttctatgggattgtgtttgttggtggattttgttatgccggtcagcttgattctgcaattg 34452165  T

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Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 185 - 316
Target Start/End: Complemental strand, 34452127 - 34451995
Alignment:
Q  185 accctctttcgacacaatttcagaagtggcctaatccacgttgtcaaatagcagctataacatagtcgaatttgaaaaaactgctattgtttagcgatat 284  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||    
T  34452127 accctctttcgacacaatttcagaagtggcccaatccgcgttgtcaaataacagctataacatagtcaaattcgaaaaaactgctattgtttagcgatat 34452028  T
Q  285 gcaatttagtacaaagta-tgtaaaatatcagc 316  Q
    |||||||||||||||||| ||||||||||||||    
T  34452027 gcaatttagtacaaagtattgtaaaatatcagc 34451995  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 18551550 - 18551501
Alignment:
Q  252 gaatttgaaaaaactgctattgtttagcgatatgcaatttagtacaaagt 301  Q
    |||||| || |||| |||||||||| | ||||||||||||||||||||||    
T  18551550 gaattttaacaaacagctattgtttcgagatatgcaatttagtacaaagt 18551501  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 301
Target Start/End: Complemental strand, 27731654 - 27731606
Alignment:
Q  253 aatttgaaaaaactgctattgtttagcgatatgcaatttagtacaaagt 301  Q
    ||||| || |||| ||||||||||| |||||||| ||||||||||||||    
T  27731654 aatttaaacaaaccgctattgtttaccgatatgctatttagtacaaagt 27731606  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 301
Target Start/End: Complemental strand, 41015064 - 41015016
Alignment:
Q  253 aatttgaaaaaactgctattgtttagcgatatgcaatttagtacaaagt 301  Q
    |||||||| ||||||||||||||  | ||||||| ||||||||||||||    
T  41015064 aatttgaacaaactgctattgttccgtgatatgctatttagtacaaagt 41015016  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 153
Target Start/End: Complemental strand, 38410163 - 38410043
Alignment:
Q  33 agaaatggatgtagcttttcatccagctggttttgaaccatgggattttactatgtcataccttcttaaagaagtcagctctttgcaagagttctatggg 132  Q
    |||||||| || ||| |||||| | || |||||||||||||||||| ||||||||||| |||||||||| | | |   |||||| ||||||||   |||     
T  38410163 agaaatggctgcagcatttcatgctgccggttttgaaccatgggatgttactatgtcagaccttcttaatggattggtctctttacaagagtttcgtgga 38410064  T
Q  133 attgtgtttgttggtggattt 153  Q
    |||||||||||||||||||||    
T  38410063 attgtgtttgttggtggattt 38410043  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 163
Target Start/End: Complemental strand, 42388363 - 42388261
Alignment:
Q  61 ggttttgaaccatgggattttactatgtcataccttcttaaagaagtcagctctttgcaagagttctatgggattgtgtttgttggtggattttgttatg 160  Q
    ||||||||||| |||||| ||||||||||| |||||||||| |  ||   ||||||||||||||||  ||| ||||||||||||||||| ||| | ||||    
T  42388363 ggttttgaaccgtgggatgttactatgtcagaccttcttaatggtgtggtctctttgcaagagttccgtggaattgtgtttgttggtgggtttagctatg 42388264  T
Q  161 ccg 163  Q
    |||    
T  42388263 ccg 42388261  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 3189794 - 3189896
Alignment:
Q  61 ggttttgaaccatgggattttactatgtcataccttcttaaagaagtcagctctttgcaagagttctatgggattgtgtttgttggtggattttgttatg 160  Q
    ||||||||||| |||||| ||||||||||| | |||||||| |  ||   ||||||||||||||||  ||| ||||||||||||||||| ||| | ||||    
T  3189794 ggttttgaaccgtgggatgttactatgtcagatcttcttaatggtgtggtctctttgcaagagttccgtggaattgtgtttgttggtgggtttagctatg 3189893  T
Q  161 ccg 163  Q
    |||    
T  3189894 ccg 3189896  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 2457210 - 2457262
Alignment:
Q  247 tagtcgaatttgaaaaaactgctattgtttagcgatatgcaatttagtacaaa 299  Q
    |||| ||||||||||||||  ||||||||| | ||||||| ||||||||||||    
T  2457210 tagtggaatttgaaaaaacgactattgttttgtgatatgctatttagtacaaa 2457262  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 301
Target Start/End: Complemental strand, 29405006 - 29404958
Alignment:
Q  253 aatttgaaaaaactgctattgtttagcgatatgcaatttagtacaaagt 301  Q
    |||||||||||| |||||||||||  |||||||  ||||||||||||||    
T  29405006 aatttgaaaaaattgctattgtttcacgatatgttatttagtacaaagt 29404958  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 28044776 - 28044727
Alignment:
Q  252 gaatttgaaaaaactgctattgtttagcgatatgcaatttagtacaaagt 301  Q
    ||||||||| ||||| ||||||||| | ||||||| ||||||||||||||    
T  28044776 gaatttgaataaactactattgttttgtgatatgcgatttagtacaaagt 28044727  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 301
Target Start/End: Complemental strand, 11766265 - 11766191
Alignment:
Q  225 ttgtcaaatagcagctataacatagtcgaatttgaaaaaactgctattgtttagcgatatgcaatttagtacaaagt 301  Q
    |||||||||||  |||||| |||||| ||||||||| |||  ||||||||||   ||||||| ||||||||||||||    
T  11766265 ttgtcaaatagaggctatatcatagtagaatttgaacaaatagctattgttt--tgatatgctatttagtacaaagt 11766191  T

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