View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8891_low_3 (Length: 643)
Name: NF8891_low_3
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8891_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Original strand, 28175235 - 28175693
Alignment:
| Q |
18 |
aatattagccttttaaattgcagaccatatgtctcgtaaggacaactcatatcgtaaaaaactgcata--gacatttgatatgttggattgtagtttgtg |
115 |
Q |
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| T |
28175235 |
aatattagccttttaaattgcagaccatatgtctcgtaaggacaactcatatcgtaaaaaactgcatatagacatttgatatgttggattgtagtttgtg |
28175334 |
T |
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| Q |
116 |
tttgaatccgtaattttccactctccgcatttagtacgtggaaatttcaccgtaagctcactagaacaagaaaaaattgcagaacaaattttataactgt |
215 |
Q |
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| T |
28175335 |
tttgaatccgtaattttccactctccgcatttagtacgtggaaatttcaccgtaagctcactagaacaagaaaaaattgcagaacaaattttataactgt |
28175434 |
T |
|
| Q |
216 |
ctgaagtaaaagaagatagatgcacaaggactatatagtgcaaaagtaaaatgataatggagattttgagtgcgtgacaagaaagtaaaggaagattatc |
315 |
Q |
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| T |
28175435 |
atgaagtaaaagaagatagatgcacaaggactatatagtgcaaaagtaaaatgataatggagattttgagtgcgtgacaagaaagtaaaggaagattatc |
28175534 |
T |
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| Q |
316 |
cataatttcatcaattatccaggattagattttggcttggaataaaaaagttggtatacagatgaaatttttctacctttacatgctcaacaaaagcttt |
415 |
Q |
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| T |
28175535 |
cataatttcatcaattatccaggattagattttggcttggaataaaaaagttggtatacagatgaaatttttctacctttacatgctcaacaaatgcttt |
28175634 |
T |
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| Q |
416 |
aaatagaaacacttgctgtaaattattgtatagaataatattgtttgttcatttgtgga |
474 |
Q |
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| T |
28175635 |
aaatagaaacacttgttgtaaattattgtatagaataatattgtttgttcatttgtgga |
28175693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 472 - 621
Target Start/End: Original strand, 28178918 - 28179076
Alignment:
| Q |
472 |
ggaactataaatatagattaagtaagagttgatatatttggtaagaactgaaattcaa---------ttatcatggtaataatgactaataagataaatt |
562 |
Q |
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| T |
28178918 |
ggaactataaatatagattaagtaagagttgatatatttggtaagaactgaaattcaaagtgtctaattatcatggtaataatgactaataagataaatt |
28179017 |
T |
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| Q |
563 |
tccatctcttcaacattaaccaaaacattattcaacaaacttcaccaacatgtggatgg |
621 |
Q |
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| T |
28179018 |
cccatctcttcaacattaaccaaaacattattcaaccaacttcaccaacatgtggatgg |
28179076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 44012526 - 44012470
Alignment:
| Q |
47 |
tgtctcgtaaggacaactcatatcgtaaaaaactgcatagacatttgatatgttgga |
103 |
Q |
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|||| |||||| | || |||||| |||||||||| |||||| ||||||||||||||| |
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| T |
44012526 |
tgtcccgtaagtataattcatatggtaaaaaactacatagatatttgatatgttgga |
44012470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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