View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8891_low_30 (Length: 310)

Name: NF8891_low_30
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8891_low_30
NF8891_low_30
[»] chr1 (1 HSPs)
chr1 (13-296)||(33354243-33354524)
[»] chr5 (2 HSPs)
chr5 (211-288)||(19176231-19176308)
chr5 (250-288)||(15047154-15047192)
[»] chr3 (1 HSPs)
chr3 (213-288)||(31148677-31148752)
[»] chr4 (2 HSPs)
chr4 (234-288)||(16502572-16502626)
chr4 (211-284)||(40020713-40020786)
[»] chr6 (1 HSPs)
chr6 (204-288)||(10057283-10057368)
[»] chr8 (4 HSPs)
chr8 (217-288)||(7872006-7872077)
chr8 (213-288)||(20302101-20302176)
chr8 (213-288)||(21088733-21088808)
chr8 (214-288)||(32531234-32531309)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 296
Target Start/End: Complemental strand, 33354524 - 33354243
Alignment:
Q  13 tttcgtgttctcaaacaactccgtttttatgacaacttcttcctgtaaaggtgttgggagttagaataatggacaattgtagttaaagtagttcagagta 112  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33354524 tttcgtcttctcaaacaactccgtttttatgacaacttcttcctgtaaaggtgttgggagttagaataatggacaattgtagttaaagtagttcagagta 33354425  T
Q  113 gttatatagaagttagttagttaatcggagattgttattatagggctatttgtataattaaatagaataatgtacaatattagagtcaaacattttttaa 212  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33354424 gttata--gaagttagttagttaatcggagattgttattatagggctatttgtataattaaatagaataatgtacaatattagagtcaaacattttttaa 33354327  T
Q  213 tattgtaaacattgtgaatatagtagtgactcaattatgaagggtaaaccctcggaggagagatttctctcctatttatgtata 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33354326 tattgtaaacattgtgaatatagtagtgactcaattatgaagggtaaaccctcggaggagagatttctctcctatttatgtata 33354243  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 211 - 288
Target Start/End: Original strand, 19176231 - 19176308
Alignment:
Q  211 aatattgtaaacattgtgaatatagtagtgactcaattatgaagggtaaaccctcggaggagagatttctctcctatt 288  Q
    |||||||||||||||||||| | |||||| |||| | | ||||||| ||||||| ||||||||||||||| |||||||    
T  19176231 aatattgtaaacattgtgaacagagtagtaactctactgtgaaggggaaacccttggaggagagatttctttcctatt 19176308  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 15047154 - 15047192
Alignment:
Q  250 tgaagggtaaaccctcggaggagagatttctctcctatt 288  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  15047154 tgaaggggaaacccttggaggagagatttctctcctatt 15047192  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 31148752 - 31148677
Alignment:
Q  213 tattgtaaacattgtgaatatagtagtgactcaattatgaagggtaaaccctcggaggagagatttctctcctatt 288  Q
    |||||||||||| ||||||| |||||| |||| ||| ||||||  ||||| | |||||||||||||||||||||||    
T  31148752 tattgtaaacatggtgaataaagtagtaactctattgtgaaggagaaaccgttggaggagagatttctctcctatt 31148677  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 16502572 - 16502626
Alignment:
Q  234 agtagtgactcaattatgaagggtaaaccctcggaggagagatttctctcctatt 288  Q
    |||||| |||| ||| ||||||| ||||||| |||||||||||||||||||||||    
T  16502572 agtagtaactctattgtgaaggggaaacccttggaggagagatttctctcctatt 16502626  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 40020786 - 40020713
Alignment:
Q  211 aatattgtaaacattgtgaatatagtagtgactcaattatgaagggtaaaccctcggaggagagatttctctcc 284  Q
    ||||||||||||| |||||||  |||||| |||| ||| ||||||| || |||| | ||||||||||| |||||    
T  40020786 aatattgtaaacagtgtgaatcgagtagtaactctattgtgaaggggaatcccttgaaggagagatttatctcc 40020713  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 10057283 - 10057368
Alignment:
Q  204 attttttaatattgtaaacatt-gtgaatatagtagtgactcaattatgaagggtaaaccctcggaggagagatttctctcctatt 288  Q
    ||||||||||||| |||| ||| || |||| ||||||||| | |||  |||||||||||||| ||||||||||  |||||||||||    
T  10057283 attttttaatattataaagatttgtaaatagagtagtgacgctattgcgaagggtaaacccttggaggagagaaatctctcctatt 10057368  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 7872006 - 7872077
Alignment:
Q  217 gtaaacattgtgaatatagtagtgactcaattatgaagggtaaaccctcggaggagagatttctctcctatt 288  Q
    ||||||||| |||||| | |||| |||| ||| ||||||| ||||||| ||||| |||||||||||| ||||    
T  7872006 gtaaacattatgaatagattagtaactctattgtgaaggggaaacccttggaggggagatttctctcatatt 7872077  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 20302101 - 20302176
Alignment:
Q  213 tattgtaaacattgtgaatatagtagtgactcaattatgaagggtaaaccctcggaggagagatttctctcctatt 288  Q
    |||||||| ||||||||||| ||||| ||||| ||| |||| || ||||||| |||||| |||  |||||||||||    
T  20302101 tattgtaatcattgtgaatagagtagggactctattgtgaaagggaaacccttggaggatagacctctctcctatt 20302176  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 21088733 - 21088808
Alignment:
Q  213 tattgtaaacattgtgaatatagtagtgactcaattatgaagggtaaaccctcggaggagagatttctctcctatt 288  Q
    |||||||| ||||||||||| ||||| ||||| ||| |||| || ||||||| |||||| |||  |||||||||||    
T  21088733 tattgtaatcattgtgaatagagtagggactctattgtgaaagggaaacccttggaggatagacctctctcctatt 21088808  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 32531234 - 32531309
Alignment:
Q  214 attgtaaacatt-gtgaatatagtagtgactcaattatgaagggtaaaccctcggaggagagatttctctcctatt 288  Q
    |||||||||||| ||||| | ||||| ||||| ||| ||||||| ||| ||| ||||||||||||| |||||||||    
T  32531234 attgtaaacatttgtgaaaagagtagcgactctattgtgaaggggaaatccttggaggagagatttttctcctatt 32531309  T

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