View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8891_low_33 (Length: 299)
Name: NF8891_low_33
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8891_low_33 |
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| [»] chr4 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 21 - 299
Target Start/End: Complemental strand, 54642210 - 54641932
Alignment:
| Q |
21 |
cagatgaggagaaactgacagatgtgttgatgttactcagaggtcgtgctcgccaatggtcacactggtggaatcgacgccatcaacaggttagttggca |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
54642210 |
cagatgaggagaaactgacagatgtgttgatgttactcagaggtcgtgctcgccaatggtcacactggtggaatcgacaccatcaacaggttagttggca |
54642111 |
T |
|
| Q |
121 |
tatgttcccgcttgcatttatttggcgttttaaaccggaatatcgggatatcatgcctatgtctgatgaagaagaagaacctgaaactgaattggaacgg |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
54642110 |
tatgttcccgcttgcatttatttggcgttttaaaccggaatatcgggatatcatgcctatgtctgatgaagaagaggaacctgaaactgaattggaacgg |
54642011 |
T |
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| Q |
221 |
ttgacgactcaagattcattcaatattcaaccacaagatattgaccagggaaatccaaatcccaccgcgataggagaag |
299 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54642010 |
ttgacgactcaaggttcattcaatattcaaccacaagatattgaccagggaaatccaaatcccaccgcgataggagaag |
54641932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 21 - 299
Target Start/End: Complemental strand, 54938695 - 54938417
Alignment:
| Q |
21 |
cagatgaggagaaactgacagatgtgttgatgttactcagaggtcgtgctcgccaatggtcacactggtggaatcgacgccatcaacaggttagttggca |
120 |
Q |
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|||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54938695 |
cagatgaggagaaactgacagatgcgctgatgttattcagaggtcgtgctcgccaatggtcacactggtggaatcgacgccatcaacaggttagttggca |
54938596 |
T |
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| Q |
121 |
tatgttcccgcttgcatttatttggcgttttaaaccggaatatcgggatatcatgcctatgtctgatgaagaagaagaacctgaaactgaattggaacgg |
220 |
Q |
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||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| |
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| T |
54938595 |
tatgttctcacttgcatttatttggcgtttaaaaccggaatatcgggatatcatgcctatgtctgataaagaagaggaacctgaaactgaattggagcgg |
54938496 |
T |
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| Q |
221 |
ttgacgactcaagattcattcaatattcaaccacaagatattgaccagggaaatccaaatcccaccgcgataggagaag |
299 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
54938495 |
ttgacgactcaaggttcattcaatattcaaccacaagatattgaccagggcaatccaaatcccaccgcgataggagaag |
54938417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 21 - 299
Target Start/End: Original strand, 13077815 - 13078093
Alignment:
| Q |
21 |
cagatgaggagaaactgacagatgtgttgatgttactcagaggtcgtgctcgccaatggtcacactggtggaatcgacgccatcaacaggttagttggca |
120 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13077815 |
cagatgaggagaaactgacagatgcgttgatgttactcagaggtcgtactcgccaatggtcacactggtggaatcgacgccatcaacaggttagttggca |
13077914 |
T |
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| Q |
121 |
tatgttcccgcttgcatttatttggcgttttaaaccggaatatcgggatatcatgcctatgtctgatgaagaagaagaacctgaaactgaattggaacgg |
220 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
13077915 |
tatgttctcacttgcatttatttggcgttttaaaccggaatatcgggatatcatgcctatgtctgatgaagaagaggaacctgaaactgaattggagtgg |
13078014 |
T |
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| Q |
221 |
ttgacgactcaagattcattcaatattcaaccacaagatattgaccagggaaatccaaatcccaccgcgataggagaag |
299 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
13078015 |
ttgacgactcaaggttcattcaatattcaaccacaagatattgaccagggcaatccaaatcccaccgcgataggagaag |
13078093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 21 - 299
Target Start/End: Complemental strand, 39984669 - 39984391
Alignment:
| Q |
21 |
cagatgaggagaaactgacagatgtgttgatgttactcagaggtcgtgctcgccaatggtcacactggtggaatcgacgccatcaacaggttagttggca |
120 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39984669 |
cagatgaggagaagctgacagatgcgttgatgttactcagaggtcgtgctcgccaatggtcacactggtggaatcgacgccatcaacaggttagttggca |
39984570 |
T |
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| Q |
121 |
tatgttcccgcttgcatttatttggcgttttaaaccggaatatcgggatatcatgcctatgtctgatgaagaagaagaacctgaaactgaattggaacgg |
220 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
39984569 |
tatgttcttacttgcatttatttggcgttttaaaccggaatatcgggatatcatgcctatgtctgatgaagaagaggaacctgaaactgaattggagtgg |
39984470 |
T |
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| Q |
221 |
ttgacgactcaagattcattcaatattcaaccacaagatattgaccagggaaatccaaatcccaccgcgataggagaag |
299 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39984469 |
ttgacgactcaaggttcattcaatattcaaccacaagatattgaccagggcaatccaaatcccaccgcgataggagaag |
39984391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 21 - 299
Target Start/End: Original strand, 14684841 - 14685119
Alignment:
| Q |
21 |
cagatgaggagaaactgacagatgtgttgatgttactcagaggtcgtgctcgccaatggtcacactggtggaatcgacgccatcaacaggttagttggca |
120 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14684841 |
cagatgaggagaagctgacagatgcgttgatgttactcagaggtcgtgctcgccaatggtcacactggtggaatcgacgccatcaacaggttagttggca |
14684940 |
T |
|
| Q |
121 |
tatgttcccgcttgcatttatttggcgttttaaaccggaatatcgggatatcatgcctatgtctgatgaagaagaagaacctgaaactgaattggaacgg |
220 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
14684941 |
tatgttcttacttgcatttatttggcgttttaaaccggaatatcgggatatcatgcctatgtctgatgaagaagaggaacctgaaactgaattggagtgg |
14685040 |
T |
|
| Q |
221 |
ttgacgactcaagattcattcaatattcaaccacaagatattgaccagggaaatccaaatcccaccgcgataggagaag |
299 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14685041 |
ttgacgactcaaggttcattcaatattcaaccacaagatattgaccagggcaatccaaatcccaccgcgataggagaag |
14685119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 21 - 299
Target Start/End: Original strand, 21306697 - 21306975
Alignment:
| Q |
21 |
cagatgaggagaaactgacagatgtgttgatgttactcagaggtcgtgctcgccaatggtcacactggtggaatcgacgccatcaacaggttagttggca |
120 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21306697 |
cagatgaggagaaactgacagatgcgttgatgttactcagaggtcgtactcgccaatggtcacactggtggaatcgacgccatcaacaggttagttggca |
21306796 |
T |
|
| Q |
121 |
tatgttcccgcttgcatttatttggcgttttaaaccggaatatcgggatatcatgcctatgtctgatgaagaagaagaacctgaaactgaattggaacgg |
220 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || |
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| T |
21306797 |
tatgttctcacttgcatttatttggcgttttaaaccggaatatcgggatatcatacctatgtctgatgaagaagaggaacctgaaactgaattggagtgg |
21306896 |
T |
|
| Q |
221 |
ttgacgactcaagattcattcaatattcaaccacaagatattgaccagggaaatccaaatcccaccgcgataggagaag |
299 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21306897 |
ttgacgactcaaggttcattcgatattcaaccacaagatattgaccagggcaatccaaatcccaccgcgataggagaag |
21306975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 21 - 299
Target Start/End: Original strand, 40421665 - 40421943
Alignment:
| Q |
21 |
cagatgaggagaaactgacagatgtgttgatgttactcagaggtcgtgctcgccaatggtcacactggtggaatcgacgccatcaacaggttagttggca |
120 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40421665 |
cagatgaggagaagctgacagatgcgttgatgttactcagaggtcgtgctcgccaatggtcacactggtggaatcgaagccatcaacaggttagttggca |
40421764 |
T |
|
| Q |
121 |
tatgttcccgcttgcatttatttggcgttttaaaccggaatatcgggatatcatgcctatgtctgatgaagaagaagaacctgaaactgaattggaacgg |
220 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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|
| T |
40421765 |
tatgttcttacttgcatttatttggcgttttaaaccggaatatcgggatatcatgcctatgtctgatgaagaagaggaacctgaaactgaattggagtgg |
40421864 |
T |
|
| Q |
221 |
ttgacgactcaagattcattcaatattcaaccacaagatattgaccagggaaatccaaatcccaccgcgataggagaag |
299 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40421865 |
ttgacgactcaaggttcattcaatattcaaccacaagatattgaccagggcaatccaaatcccaccgcgataggagaag |
40421943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 168
Target Start/End: Complemental strand, 5116677 - 5116530
Alignment:
| Q |
21 |
cagatgaggagaaactgacagatgtgttgatgttactcagaggtcgtgctcgccaatggtcacactggtggaatcgacgccatcaacaggttagttggca |
120 |
Q |
| |
|
|||| |||||||||| |||||| ||||||| |||||||||||| ||| || || || ||| ||||||| ||| |||| ||||||||||||||||||| |
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| T |
5116677 |
cagaggaggagaaaccgacagaggtgttgaagttactcagaggctgtgttcaccgatagtcgcactggtataattgacgtcatcaacaggttagttggcg |
5116578 |
T |
|
| Q |
121 |
tatgttcccgcttgcatttatttggcgttttaaaccggaatatcggga |
168 |
Q |
| |
|
| ||| | ||| ||||||||||||| |||||| || ||||||||||| |
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| T |
5116577 |
cacgttactgctcgcatttatttggcattttaagccagaatatcggga |
5116530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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