View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8891_low_34 (Length: 296)
Name: NF8891_low_34
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8891_low_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 44453729 - 44453993
Alignment:
| Q |
18 |
tttactgaactgagtatttcttgcagaatctcgaaataaagaaaatcaacgatgaaaagaaagcatcgatggcagctcagtttgcagctgaagctactct |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44453729 |
tttactgaaccgagtatttcttgcagaatctcgaaataaagaaaatcaacgatgaaaagaaagcatcgatggcagctcagtttgcagctgaagctactct |
44453828 |
T |
|
| Q |
118 |
tcgaagggtccatgctgctcagaaggatgatgacatgcctcctatagaagccattctagctcctttagaggctgaactcaagcttgctcggcaagaggta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44453829 |
tcgaagggtccatgctgctcagaaggatgatgacatgcctcctatagaagccattctagctcctttagaggctgaactcaagcttgctcggcaagaggta |
44453928 |
T |
|
| Q |
218 |
tgtattgccttattttttctattttgaatggtagtttctgtgtgaaaatactggttaaagggcac |
282 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44453929 |
tttattgccttattttttctattttgaatggtagtttctgtgtgaaaatactggttaaagggcac |
44453993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 7518119 - 7518297
Alignment:
| Q |
40 |
gcagaatctcgaaataaagaaaatcaacgatgaaaagaaagcatcgatggcagctcagtttgcagctgaagctactcttcgaagggtccatgctgctcag |
139 |
Q |
| |
|
||||||||| |||||||||||||| || ||||||||||||||| | ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7518119 |
gcagaatcttgaaataaagaaaattaatgatgaaaagaaagcagcaatggccgctcagtttgctgctgaagctactcttcgaagggtacatgctgctcag |
7518218 |
T |
|
| Q |
140 |
aaggatgatgacatgcctcctatagaagccattctagctcctttagaggctgaactcaagcttgctcggcaagaggtat |
218 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||| |||||||| ||||||||||| || |||||||| |||||||||| |
|
|
| T |
7518219 |
aaggatgatgacatgcccccaatagaagcaattcttgctcctttggaggctgaactaaaacttgctcgacaagaggtat |
7518297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 44464422 - 44464586
Alignment:
| Q |
18 |
tttactgaactgagtatttcttgcagaatctcgaaataaagaaaatcaacgatgaaaagaaagcatcgatggcagctcagtttgcagctgaagctactct |
117 |
Q |
| |
|
|||||| ||| |||||||||| | |||||| ||||||||||||||||| ||||||||||||| | |||||||||||| |||||||||||||||||||| |
|
|
| T |
44464422 |
tttacttaaccgagtatttctcaccgaatcttgaaataaagaaaatcaatgatgaaaagaaagtgttgatggcagctcaatttgcagctgaagctactct |
44464521 |
T |
|
| Q |
118 |
tcgaagggtccatgctgctcagaaggatgatgacatgcctcctatagaagccattctagctcctt |
182 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44464522 |
tcgaagggtccatgctgctcaaaaggatgatgacatgcctcctatagaggccattctagctcctt |
44464586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 44471953 - 44472194
Alignment:
| Q |
18 |
tttactgaactgagtatttcttgcagaatctcgaaataaagaaaatcaacgatgaaaagaaagcatcgatggcagctcagtttgcagctgaagctactct |
117 |
Q |
| |
|
|||||| ||| |||||||||| | |||||| ||||||||||||||||| ||||||||||||| | |||||||||||| |||||||||||||||||||| |
|
|
| T |
44471953 |
tttacttaaccgagtatttctcaccgaatcttgaaataaagaaaatcaatgatgaaaagaaagtgttgatggcagctcaatttgcagctgaagctactct |
44472052 |
T |
|
| Q |
118 |
tcgaagggtccatgctgctcagaaggatgatgacatgcctcctatagaagccattctagctcctttagaggctgaactcaagcttgctcggcaagaggta |
217 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| | |
|
|
| T |
44472053 |
tcgaagggtccatgctgctcaaaaggatgatgacatgcctcctatagagtccattctagctcctt--------------------gctctgcaagaggca |
44472132 |
T |
|
| Q |
218 |
tgtattgccttattttttctattttgaatggtagtttctgtgtgaaaatactggttaaaggg |
279 |
Q |
| |
|
||||||||||| |||||| || |||||||||||||| |||||| ||||||| |||||||||| |
|
|
| T |
44472133 |
tgtattgccttgttttttttactttgaatggtagttcctgtgttaaaataccggttaaaggg |
44472194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 44464584 - 44464652
Alignment:
| Q |
200 |
cttgctcggcaagaggtatgtattgccttattttttctattttgaatggtagtttctgtgtgaaaatac |
268 |
Q |
| |
|
||||||| |||||||| |||||||||||| |||||| || |||||||||||||| |||||| ||||||| |
|
|
| T |
44464584 |
cttgctctgcaagaggcatgtattgccttgttttttttactttgaatggtagttcctgtgttaaaatac |
44464652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 41 - 218
Target Start/End: Original strand, 11574427 - 11574604
Alignment:
| Q |
41 |
cagaatctcgaaataaagaaaatcaacgatgaaaagaaagcatcgatggcagctcagtttgcagctgaagctactcttcgaagggtccatgctgctcaga |
140 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
11574427 |
cagaatcttgaaataaagaaaatcaatgatgagaagaaagcatcaatggcagctcagtttgcagcagaagctactcttcggagggtccatgctgctcaga |
11574526 |
T |
|
| Q |
141 |
aggatgatgacatgcctcctatagaagccattctagctcctttagaggctgaactcaagcttgctcggcaagaggtat |
218 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||| |||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
11574527 |
aggatgatgacatgcctccgatcgaagcaattcttgctcctttggaggctgaactaaagcttgctcggcaagaggtat |
11574604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 103 - 282
Target Start/End: Complemental strand, 636895 - 636722
Alignment:
| Q |
103 |
agctgaagctactcttcgaagggtccatgctgctcagaaggatgatgacatgcctcctatagaagccattctagctcctttagaggctgaactcaagctt |
202 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
636895 |
agctgaagccactcttcgaagagtccatgctgctcagaaggatgatgaaatgcctcctatagaagccattctagcc-------aggcttaactcaagctt |
636803 |
T |
|
| Q |
203 |
gctcggcaagaggtatgtattgccttat-tttttctattttgaatggtagtttctgtgtgaaaatactggttaaagggcac |
282 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
636802 |
gctcggcaagaggtatgtattgccttatatttttctattttgaagggtagtttctgtctaaaagtactggttaaagggcac |
636722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University