View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8891_low_35 (Length: 283)
Name: NF8891_low_35
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8891_low_35 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 34824650 - 34824375
Alignment:
| Q |
1 |
ttagttatcatagatgaataaatacatcgtgccttacaatacttgcgtgctttgtgctaacataagaccttcacgctatagttagagagtatgagcaaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | || | ||||| |||||||||||||||||||| |
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| T |
34824650 |
ttagttatcatagatgaataaatacatcgtgccttccaatacttgcgtgctttgtgctt---ttggatgt----gctatggttagagagtatgagcaaca |
34824558 |
T |
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| Q |
101 |
aggtttacatcatttttcttgtgataaatccagtcatacagactacaattttgatgatttagtaacaaggctcgacatttataaacggcaaataaaaccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34824557 |
aggtttacatcatttttcttgtgataaatccagtcatacagactacaattttgatgatttagtaacaaggctcgacatttataaacggcaaataaaaccc |
34824458 |
T |
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| Q |
201 |
gttccaactcagccatatataagaacgttaattaattgtcgttcaactttacagtaagatccttgtgagtcatcaaaggttat |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34824457 |
gttccaactcagccatatataagaacgttaattaattgttgttcaactttacagtaagatccttgtgagtcatcaaaggttat |
34824375 |
T |
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