View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8891_low_36 (Length: 283)
Name: NF8891_low_36
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8891_low_36 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 87 - 280
Target Start/End: Complemental strand, 27405404 - 27405214
Alignment:
| Q |
87 |
tggaaaaagctaaaacgcatgacataaaattttgtcaccattgcacgaatgagttgtatgttgtagttagagtacnnnnnnnnnnnnnnnnnnacttcaa |
186 |
Q |
| |
|
|||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27405404 |
tggaaaaagctaaaacacacgacataaaatttcgtcaccattgcacgaatgagttgtatgttgtagttagagtacttttttaattctgtttttacttcaa |
27405305 |
T |
|
| Q |
187 |
atgattagtatagtctagcatatgtgtttgtctatgaaaaaacacaatgacttctctcctcgtaagcgtacctttgtgagttgatgatgtccat |
280 |
Q |
| |
|
||||| | | |||||||||||||||||||| |||| ||||||||| ||||||||||||| | | |||||| ||||||||| |||||||||| |
|
|
| T |
27405304 |
atgatcactgtagtctagcatatgtgtttg---atgagaaaacacaaagacttctctcctcatcactgtacctatgtgagttgctgatgtccat |
27405214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 87 - 276
Target Start/End: Original strand, 5589763 - 5589952
Alignment:
| Q |
87 |
tggaaaaagctaaaacgcatgacataaaattttgtcaccattgcacgaatgagttgtatgttgtagttagagtacnnnnnnnnnnnnnnnnnnacttcaa |
186 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||| ||| ||||||| |
|
|
| T |
5589763 |
tggaaaaagctaaaacgcacgacataaaatttcttcaccattgcacgaatgagttgtaagttgtagttagaatacttttttaattatgcttttacttcaa |
5589862 |
T |
|
| Q |
187 |
atgattagtatagtctagcatatgtgtttgtctatgaaaaaacacaatgacttctctcctcgtaagcgtacctttgtgagttgatgatgt |
276 |
Q |
| |
|
| ||| | | ||||||||||||||||||||||||||| ||||||||| |||||||||||| | | ||| |||||||||||| |||||| |
|
|
| T |
5589863 |
acgatcactgtagtctagcatatgtgtttgtctatgagaaaacacaaacacttctctcctcatcactgtatctttgtgagttgctgatgt |
5589952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 38919818 - 38919745
Alignment:
| Q |
88 |
ggaaaaagctaaaacgcatgacataaaattttgtcaccattgcacgaatgagttgtatgttgtagttagagtac |
161 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||| ||||||||||||||||||| |||||||| ||||||| ||||| |
|
|
| T |
38919818 |
ggaaaaagataaaatgcacgacataaaatttcgtcaccattgcacgaatgaattgtatgtagtagttatagtac |
38919745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 228975 - 229011
Alignment:
| Q |
197 |
tagtctagcatatgtgtttgtctatgaaaaaacacaa |
233 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
228975 |
tagtctagcatatgtgtttgtctataaaataacacaa |
229011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 17441515 - 17441578
Alignment:
| Q |
86 |
atggaaaaagctaaaacgcatgacataaaattttgtcaccattgcacgaatgagttgtatgttgt |
150 |
Q |
| |
|
||||||||||||||| ||| |||| |||||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
17441515 |
atggaaaaagctaaagtgcacgacaaaaaattc-gtcactattgcacgaatgagttatatgttgt |
17441578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University