View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8891_low_39 (Length: 267)

Name: NF8891_low_39
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8891_low_39
NF8891_low_39
[»] chr8 (3 HSPs)
chr8 (5-247)||(10582815-10583065)
chr8 (37-108)||(14266466-14266537)
chr8 (44-108)||(25887691-25887755)
[»] chr2 (4 HSPs)
chr2 (54-108)||(30617108-30617162)
chr2 (37-108)||(12068507-12068577)
chr2 (44-109)||(30375746-30375811)
chr2 (37-109)||(30378903-30378975)
[»] chr4 (5 HSPs)
chr4 (37-106)||(33881286-33881355)
chr4 (37-105)||(23427369-23427437)
chr4 (37-108)||(51084222-51084293)
chr4 (37-90)||(52255722-52255775)
chr4 (37-108)||(54234138-54234207)
[»] chr3 (2 HSPs)
chr3 (37-85)||(4958038-4958086)
chr3 (63-108)||(9797966-9798011)
[»] chr1 (5 HSPs)
chr1 (37-108)||(2753485-2753556)
chr1 (37-108)||(13142376-13142447)
chr1 (37-108)||(22680657-22680728)
chr1 (54-108)||(42069847-42069901)
chr1 (63-108)||(12569777-12569822)
[»] chr7 (3 HSPs)
chr7 (54-108)||(5515673-5515727)
chr7 (37-90)||(21857767-21857820)
chr7 (37-108)||(5734414-5734485)
[»] chr6 (1 HSPs)
chr6 (37-108)||(17313892-17313963)
[»] chr5 (2 HSPs)
chr5 (37-108)||(5863414-5863485)
chr5 (37-108)||(10541468-10541539)
[»] scaffold1944 (1 HSPs)
scaffold1944 (37-109)||(826-898)
[»] scaffold1790 (1 HSPs)
scaffold1790 (37-109)||(967-1039)


Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 5 - 247
Target Start/End: Complemental strand, 10583065 - 10582815
Alignment:
Q  5 gtcaaaacgaacttttaagaaggttagac---gctt-----aaagcctttgacagattaataggtcaggcttagactttagttttttcaactagacctgt 96  Q
    |||| ||||||||||||||||||||||||   ||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  10583065 gtcagaacgaacttttaagaaggttagaccaggcttcatataaagcctttgacagattaataggtcaggcttagactttagttttttcaactagacctac 10582966  T
Q  97 cctatttaagcatgattaacagacctccgaggaagcttccaagcatgattgttggatttattcaatgaagatcgaattaaaaactctagagaaaattggt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10582965 cctatttaagcatgattaacagacctccgaggaagcttccaagcatgattgttggatttattcaatgaagatcgaattaaaaactctagagaaaattggt 10582866  T
Q  197 acttggactttggttgatgctcgtttcatttttaaaccaataggtagtaac 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10582865 acttggactttggttgatgctcgtttcatttttaaaccaataggttgtaac 10582815  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 14266466 - 14266537
Alignment:
Q  37 taaagcctttgacagattaataggtcaggcttagactttagttttttcaactagacctgtcctatttaagca 108  Q
    |||||||||||||||  ||| |||| |||||||||||||| ||||||||||||| |||| ||||||||||||    
T  14266466 taaagcctttgacaggctaagaggtgaggcttagactttaattttttcaactaggcctgacctatttaagca 14266537  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 25887755 - 25887691
Alignment:
Q  44 tttgacagattaataggtcaggcttagactttagttttttcaactagacctgtcctatttaagca 108  Q
    |||||||||||||||| |||| ||||| ||||| ||||||  |||||| ||| | ||||||||||    
T  25887755 tttgacagattaatagatcagacttaggctttaatttttttcactagatctgacatatttaagca 25887691  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 30617162 - 30617108
Alignment:
Q  54 taataggtcaggcttagactttagttttttcaactagacctgtcctatttaagca 108  Q
    ||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||    
T  30617162 taataggtcaggcttaggctttagttttttcaactaggcctggcctatttaagca 30617108  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 12068577 - 12068507
Alignment:
Q  37 taaagcctttgacagattaataggtcaggcttagactttagttttttcaactagacctgtcctatttaagca 108  Q
    |||||||||||||||   || |||| |||||||| ||||||||||||||||||| |||  ||||||||||||    
T  12068577 taaagcctttgacaggcaaa-aggtaaggcttaggctttagttttttcaactaggcctagcctatttaagca 12068507  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 30375746 - 30375811
Alignment:
Q  44 tttgacagattaataggtcaggcttagactttagttttttcaactagacctgtcctatttaagcat 109  Q
    ||||| ||| ||||||| ||||||||  ||||||||||||||||||| |  | |||||||||||||    
T  30375746 tttgatagactaataggccaggcttaagctttagttttttcaactaggctcgacctatttaagcat 30375811  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 30378903 - 30378975
Alignment:
Q  37 taaagcctttgacagattaataggtcaggcttagactttagttttttcaactagacctgtcctatttaagcat 109  Q
    |||||| |||||||   ||||||||||||||||   |||||||||||||||||| |  | |||||||||||||    
T  30378903 taaagcatttgacaagctaataggtcaggcttaagttttagttttttcaactaggctcgacctatttaagcat 30378975  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 33881286 - 33881355
Alignment:
Q  37 taaagcctttgacagattaataggtcaggcttagactttagttttttcaactagacctgtcctatttaag 106  Q
    |||||||||||||||| ||||| | ||| ||||| ||||||||||||||||||| |||| ||||||||||    
T  33881286 taaagcctttgacagactaatatgccagacttagcctttagttttttcaactaggcctgacctatttaag 33881355  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 23427369 - 23427437
Alignment:
Q  37 taaagcctttgacagattaataggtcaggcttagactttagttttttcaactagacctgtcctatttaa 105  Q
    ||||||||||||||   |||||| |||| ||||||||||||||||||||||||| |||| |||||||||    
T  23427369 taaagcctttgacatgctaatagatcagacttagactttagttttttcaactaggcctgacctatttaa 23427437  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 51084293 - 51084222
Alignment:
Q  37 taaagcctttgacagattaataggtcaggcttagactttagttttttcaactagacctgtcctatttaagca 108  Q
    ||||||||||||||   ||||||  ||||||||| ||||||||||||||||||| || | ||||||||||||    
T  51084293 taaagcctttgacatgctaatagcccaggcttaggctttagttttttcaactaggcccggcctatttaagca 51084222  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 52255722 - 52255775
Alignment:
Q  37 taaagcctttgacagattaataggtcaggcttagactttagttttttcaactag 90  Q
    |||||||||||||||| ||||||| ||| ||||  |||||||||||||||||||    
T  52255722 taaagcctttgacagactaataggccagacttaagctttagttttttcaactag 52255775  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 54234207 - 54234138
Alignment:
Q  37 taaagcctttgacagattaataggtcaggcttagactttagttttttcaactagacctgtcctatttaagca 108  Q
    ||||||||||||||   |||| || |||||||| |||  ||||||||||||||| |||| ||||||||||||    
T  54234207 taaagcctttgacatgctaatggggcaggcttatact--agttttttcaactaggcctgacctatttaagca 54234138  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 4958038 - 4958086
Alignment:
Q  37 taaagcctttgacagattaataggtcaggcttagactttagttttttca 85  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  4958038 taaagcctttgacagactaataggtcaggcttagactttaattttttca 4958086  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 9798011 - 9797966
Alignment:
Q  63 aggcttagactttagttttttcaactagacctgtcctatttaagca 108  Q
    |||||||| ||||||||||||||||||| |||  ||||||||||||    
T  9798011 aggcttaggctttagttttttcaactaggcctagcctatttaagca 9797966  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 2753485 - 2753556
Alignment:
Q  37 taaagcctttgacagattaataggtcaggcttagactttagttttttcaactagacctgtcctatttaagca 108  Q
    |||||||||||| ||  |||||||||||| |||| ||||||||||||||||||| |||| | ||||||||||    
T  2753485 taaagcctttgagaggctaataggtcaggtttaggctttagttttttcaactaggcctgacatatttaagca 2753556  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 13142447 - 13142376
Alignment:
Q  37 taaagcctttgacagattaataggtcaggcttagactttagttttttcaactagacctgtcctatttaagca 108  Q
    ||||||| |||| ||  ||||||| ||||||||| ||||| ||||||||||||| |||| ||||||||||||    
T  13142447 taaagccattgataggctaataggccaggcttaggctttaattttttcaactaggcctgacctatttaagca 13142376  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 22680728 - 22680657
Alignment:
Q  37 taaagcctttgacagattaataggtcaggcttagactttagttttttcaactagacctgtcctatttaagca 108  Q
    |||||||||||||||  ||||||| ||| |||||||||| |||||||| |||||  ||  ||||||||||||    
T  22680728 taaagcctttgacaggctaataggccagacttagactttggttttttcgactaggtctagcctatttaagca 22680657  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 42069847 - 42069901
Alignment:
Q  54 taataggtcaggcttagactttagttttttcaactagacctgtcctatttaagca 108  Q
    ||||| ||||| |||||||||||||||||||||||| |||||   ||||||||||    
T  42069847 taatatgtcagacttagactttagttttttcaactaaacctgatttatttaagca 42069901  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 12569777 - 12569822
Alignment:
Q  63 aggcttagactttagttttttcaactagacctgtcctatttaagca 108  Q
    |||||||||| ||||||||||||||||| |||  ||||||||||||    
T  12569777 aggcttagaccttagttttttcaactaggcctagcctatttaagca 12569822  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 5515673 - 5515727
Alignment:
Q  54 taataggtcaggcttagactttagttttttcaactagacctgtcctatttaagca 108  Q
    ||||| || ||||||||||||||||||||||||||||  ||| ||||||||||||    
T  5515673 taataagttaggcttagactttagttttttcaactaggtctgacctatttaagca 5515727  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 21857767 - 21857820
Alignment:
Q  37 taaagcctttgacagattaataggtcaggcttagactttagttttttcaactag 90  Q
    ||||| |||||||||  ||||||||||| ||||| |||||||||||| ||||||    
T  21857767 taaagtctttgacaggctaataggtcagacttaggctttagtttttttaactag 21857820  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 5734414 - 5734485
Alignment:
Q  37 taaagcctttgacagattaataggtcagg-cttagactttagttttttcaactagacctgtcctatttaagca 108  Q
    ||||||||||||||| | || |||||| | ||||| | ||| ||||||||||||||||| |||||||||||||    
T  5734414 taaagcctttgacaggtaaa-aggtcaagacttaggccttaattttttcaactagacctatcctatttaagca 5734485  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 17313963 - 17313892
Alignment:
Q  37 taaagcctttgacagattaataggtcaggcttagactttagttttttcaactagacctgtcctatttaagca 108  Q
    |||| |||||||||   ||||||||||| ||||  ||||||||||||||||||| |||  ||||||||||||    
T  17313963 taaaacctttgacaagctaataggtcagacttacgctttagttttttcaactaggcctaacctatttaagca 17313892  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 5863414 - 5863485
Alignment:
Q  37 taaagcctttgacagattaataggtcaggcttagactttagttttttcaactagacctgtcctatttaagca 108  Q
    ||||| ||||||||   |||||| ||| |||||| ||||| ||||||||||||| |||| ||||||||||||    
T  5863414 taaagtctttgacaagctaatagatcaagcttaggctttatttttttcaactaggcctgacctatttaagca 5863485  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 10541539 - 10541468
Alignment:
Q  37 taaagcctttgacagattaataggtca-ggcttagactttagttttttcaactagacctgtcctatttaagca 108  Q
    |||||||||||||| | ||| |||||| ||||||| | ||||||||||||||||| |||  ||||||||||||    
T  10541539 taaagcctttgaca-agtaaaaggtcaaggcttaggccttagttttttcaactaggcctagcctatttaagca 10541468  T

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Target: scaffold1944 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1944
Description:

Target: scaffold1944; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 898 - 826
Alignment:
Q  37 taaagcctttgacagattaataggtcaggcttagactttagttttttcaactagacctgtcctatttaagcat 109  Q
    |||||| ||||  ||| ||||||| ||| ||||  |||||||||||||||||||||  | |||||||||||||    
T  898 taaagcatttgttagactaataggccagacttaagctttagttttttcaactagactcgacctatttaagcat 826  T

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Target: scaffold1790 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1790
Description:

Target: scaffold1790; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 1039 - 967
Alignment:
Q  37 taaagcctttgacagattaataggtcaggcttagactttagttttttcaactagacctgtcctatttaagcat 109  Q
    |||||| ||||  ||| ||||||| ||| ||||  |||||||||||||||||||||  | |||||||||||||    
T  1039 taaagcatttgttagactaataggccagacttaagctttagttttttcaactagactcgacctatttaagcat 967  T

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