View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8891_low_4 (Length: 643)

Name: NF8891_low_4
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8891_low_4
NF8891_low_4
[»] chr8 (2 HSPs)
chr8 (18-474)||(28175235-28175693)
chr8 (472-621)||(28178918-28179076)
[»] chr2 (1 HSPs)
chr2 (47-103)||(44012470-44012526)


Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Original strand, 28175235 - 28175693
Alignment:
Q  18 aatattagccttttaaattgcagaccatatgtctcgtaaggacaactcatatcgtaaaaaactgcata--gacatttgatatgttggattgtagtttgtg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  28175235 aatattagccttttaaattgcagaccatatgtctcgtaaggacaactcatatcgtaaaaaactgcatatagacatttgatatgttggattgtagtttgtg 28175334  T
Q  116 tttgaatccgtaattttccactctccgcatttagtacgtggaaatttcaccgtaagctcactagaacaagaaaaaattgcagaacaaattttataactgt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28175335 tttgaatccgtaattttccactctccgcatttagtacgtggaaatttcaccgtaagctcactagaacaagaaaaaattgcagaacaaattttataactgt 28175434  T
Q  216 ctgaagtaaaagaagatagatgcacaaggactatatagtgcaaaagtaaaatgataatggagattttgagtgcgtgacaagaaagtaaaggaagattatc 315  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28175435 atgaagtaaaagaagatagatgcacaaggactatatagtgcaaaagtaaaatgataatggagattttgagtgcgtgacaagaaagtaaaggaagattatc 28175534  T
Q  316 cataatttcatcaattatccaggattagattttggcttggaataaaaaagttggtatacagatgaaatttttctacctttacatgctcaacaaaagcttt 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28175535 cataatttcatcaattatccaggattagattttggcttggaataaaaaagttggtatacagatgaaatttttctacctttacatgctcaacaaatgcttt 28175634  T
Q  416 aaatagaaacacttgctgtaaattattgtatagaataatattgtttgttcatttgtgga 474  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28175635 aaatagaaacacttgttgtaaattattgtatagaataatattgtttgttcatttgtgga 28175693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 472 - 621
Target Start/End: Original strand, 28178918 - 28179076
Alignment:
Q  472 ggaactataaatatagattaagtaagagttgatatatttggtaagaactgaaattcaa---------ttatcatggtaataatgactaataagataaatt 562  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  28178918 ggaactataaatatagattaagtaagagttgatatatttggtaagaactgaaattcaaagtgtctaattatcatggtaataatgactaataagataaatt 28179017  T
Q  563 tccatctcttcaacattaaccaaaacattattcaacaaacttcaccaacatgtggatgg 621  Q
     ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28179018 cccatctcttcaacattaaccaaaacattattcaaccaacttcaccaacatgtggatgg 28179076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 44012526 - 44012470
Alignment:
Q  47 tgtctcgtaaggacaactcatatcgtaaaaaactgcatagacatttgatatgttgga 103  Q
    |||| |||||| | || |||||| |||||||||| |||||| |||||||||||||||    
T  44012526 tgtcccgtaagtataattcatatggtaaaaaactacatagatatttgatatgttgga 44012470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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