View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8891_low_40 (Length: 263)
Name: NF8891_low_40
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8891_low_40 |
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| [»] chr5 (8 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 1053904 - 1053659
Alignment:
| Q |
18 |
ctaaaactatcagtgacacaattattgcaaaaaatgtaggcacccttggatgctacatcatatgttttattattgaagagaagggtagtcagtataacct |
117 |
Q |
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| T |
1053904 |
ctaaaactatcagtgacacaattattgcaaaaaatgtaggcacccttggatgctacatcatatgtttaattattcaagagaagggtagtcagtataacct |
1053805 |
T |
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| Q |
118 |
ataactggatcagaagtgtagaatgtctccctattatacttgttaagaggagcattaagtgcaaatctctttggtaaatctggattagatatgaacaaac |
217 |
Q |
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| T |
1053804 |
ataactggatcagaagtgtagaatgtctccctattatacttgttaagaggagcattaagtgcaaatctctttggtaaatctggattagatatgaacaaac |
1053705 |
T |
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| Q |
218 |
gaccataagcaataagatctgccctattttcagctatagcattgat |
263 |
Q |
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| T |
1053704 |
gaccataagcaataagatctgccctattttcagctatagcattgat |
1053659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 93 - 263
Target Start/End: Complemental strand, 1059094 - 1058924
Alignment:
| Q |
93 |
aagagaagggtagtcagtataacctataactggatcagaagtgtagaatgtctccctattatacttgttaagaggagcattaagtgcaaatctctttggt |
192 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| || |
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| T |
1059094 |
aagaaaagggtagtcagtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagcattaagtgcaaatctcttcggc |
1058995 |
T |
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| Q |
193 |
aaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttcagctatagcattgat |
263 |
Q |
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| T |
1058994 |
aaatctggattagctaagaacaaacgaccatatacaacaaggtctgtcctattttcagctatggcattgat |
1058924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 71 - 263
Target Start/End: Complemental strand, 1047179 - 1046987
Alignment:
| Q |
71 |
tacatcatatgttttattattgaagagaagggtagtcagtataacctataactggatcagaagtgtagaatgtctccctattatacttgttaagaggagc |
170 |
Q |
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|||| ||||||||| | ||| |||| |||||||||| |||||||| | |||||||||||||||| ||||||||||| ||||||||||||| || ||||| |
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| T |
1047179 |
tacaacatatgtttattcattcaagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggggagc |
1047080 |
T |
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| Q |
171 |
attaagtgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttcagctatagcattgat |
263 |
Q |
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| T |
1047079 |
attaagtgcaaatctctttggcaaatctggattagctatgaataaacggtcgtaagcaacaagatctaccctattttcagctatagcattgat |
1046987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 62 - 263
Target Start/End: Complemental strand, 1066217 - 1066016
Alignment:
| Q |
62 |
cttggatgctacatcatatgttttattattgaagagaagggtagtcagtataacctataactggatcagaagtgtagaatgtctccctattatacttgtt |
161 |
Q |
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| T |
1066217 |
cttggatgctacagcatcagtttcttcattcaagaaaggggtagtcagtataacctagaactggatcagaaatgtagaacgtctccctgttatatttgtt |
1066118 |
T |
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| Q |
162 |
aagaggagcattaagtgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttcagctatagcattg |
261 |
Q |
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| T |
1066117 |
cagaggagcatcaagtgcaaatctctttggtaaatctggattagctaagaacaaacgaccatatacaacaaggtctgccctgttttcagctatggcattg |
1066018 |
T |
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| Q |
262 |
at |
263 |
Q |
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|| |
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| T |
1066017 |
at |
1066016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 93 - 263
Target Start/End: Complemental strand, 1071913 - 1071743
Alignment:
| Q |
93 |
aagagaagggtagtcagtataacctataactggatcagaagtgtagaatgtctccctattatacttgttaagaggagcattaagtgcaaatctctttggt |
192 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||| ||| ||||||||||| ||||||||||| |||||||||| |||||||||||||||||| |
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| T |
1071913 |
aagaaaagggtagtcagtataacctagaactggatcagaaacgtaaaatgtctccctgttatacttgtttagaggagcatcaagtgcaaatctctttggc |
1071814 |
T |
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| Q |
193 |
aaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttcagctatagcattgat |
263 |
Q |
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| T |
1071813 |
aaatctggattagctaagaacaaacgaccatatacaactaggtctgccctgttttcagctatggcattgat |
1071743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 103 - 259
Target Start/End: Complemental strand, 1044561 - 1044405
Alignment:
| Q |
103 |
tagtcagtataacctataactggatcagaagtgtagaatgtctccctattatacttgttaagaggagcattaagtgcaaatctctttggtaaatctggat |
202 |
Q |
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|||||||| ||||| | ||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
1044561 |
tagtcagtgtaaccaacaaccggatcagaaatgtagaatgtctccctattatacttgttgagaggagcattaagtgcaaatctctttggcaaatctggat |
1044462 |
T |
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| Q |
203 |
tagatatgaacaaacgaccataagcaataagatctgccctattttcagctatagcat |
259 |
Q |
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| | || |||||||||||||||| | | |||||||||| | |||||||||||||||| |
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| T |
1044461 |
ttgctaagaacaaacgaccataaactacaagatctgccttgttttcagctatagcat |
1044405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 103 - 263
Target Start/End: Complemental strand, 1034174 - 1034014
Alignment:
| Q |
103 |
tagtcagtataacctataactggatcagaagtgtagaatgtctccctattatacttgttaagaggagcattaagtgcaaatctctttggtaaatctggat |
202 |
Q |
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||||| |||||||||| ||| |||||||||||||||||||||||||| ||||| || || |||||||| || |||||||||||||| || |||||||||| |
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| T |
1034174 |
tagtccgtataacctacaaccggatcagaagtgtagaatgtctccctgttatatttattgagaggagcgtttagtgcaaatctcttcggcaaatctggat |
1034075 |
T |
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| Q |
203 |
tagatatgaacaaacgaccataagcaataagatctgccctattttcagctatagcattgat |
263 |
Q |
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| | || |||||||||||||||| ||| ||||||||||||||| || |||||||||||||| |
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| T |
1034074 |
tcgctaagaacaaacgaccataaacaacaagatctgccctattatctgctatagcattgat |
1034014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 93 - 259
Target Start/End: Original strand, 1640372 - 1640538
Alignment:
| Q |
93 |
aagagaagggtagtcagtataacctataactggatcagaagtgtagaatgtctccctattatacttgttaagaggagcattaagtgcaaatctctttggt |
192 |
Q |
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|||| |||||||||| |||||||| | ||| |||||||| ||||||||||| |||| ||||||||||| |||||||||| || || |||||||||||| |
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| T |
1640372 |
aagaaaagggtagtctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttggt |
1640471 |
T |
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| Q |
193 |
aaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttcagctatagcat |
259 |
Q |
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| T |
1640472 |
aaatctggattagatataaacaagcgaccataagcaacaagatctgtcttattttcaactatggcat |
1640538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 65937 - 65854
Alignment:
| Q |
177 |
tgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttcagctatagcatt |
260 |
Q |
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||||||||||||||| |||| |||||||| || |||| ||||||||||| ||| |||||||||| ||||||| ||||||||||| |
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| T |
65937 |
tgcaaatctctttggcaaatttggattagctaagaacgaacgaccataaacaacaagatctgccttattttctgctatagcatt |
65854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 12121338 - 12121407
Alignment:
| Q |
177 |
tgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattt |
246 |
Q |
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|||||||||| |||| ||||||||||||| || |||||||||||||||| ||| |||||||||| ||||| |
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| T |
12121338 |
tgcaaatctcattggcaaatctggattagctaagaacaaacgaccataaacaacaagatctgccttattt |
12121407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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