View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8891_low_43 (Length: 248)
Name: NF8891_low_43
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8891_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 33 - 157
Target Start/End: Original strand, 35444433 - 35444557
Alignment:
| Q |
33 |
cataatgtgaagtaaaacgtgcagctaatccgatcatcatgcgaagtaaaataaagtgcagttaatccactcgaaaaacatataggttggagagcgtata |
132 |
Q |
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| T |
35444433 |
cataatgtgaagtaaaacgtgcagctaatccgatcatcatgtgaagtaaaataaagtgcagttaatccactcgaaaaacatataggttggagagcgtata |
35444532 |
T |
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| Q |
133 |
aggtgcattaccatgttattcaata |
157 |
Q |
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| T |
35444533 |
aggtgcattactatgttatttaata |
35444557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 35445668 - 35445746
Alignment:
| Q |
149 |
tattcaataatcataatcaattttctccaaaaatgttacagtaataaaaatcacaatacaaatgttcaaataagtagtt |
227 |
Q |
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| T |
35445668 |
tattcaataatcataatcaattttctccaaaaatgttacagtaataaaaatcacaatacaaatgttcaaataagtagtt |
35445746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35444425 - 35444389
Alignment:
| Q |
1 |
aatgaaattgttattaatcgggttaaatatcacataa |
37 |
Q |
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| T |
35444425 |
aatgaaattgttattaatcgggttaaatatcacataa |
35444389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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