View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8891_low_45 (Length: 246)
Name: NF8891_low_45
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8891_low_45 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 42021695 - 42021468
Alignment:
| Q |
19 |
aatctactattcaaaccactccttgtcctaaacataaaaacagcagaaacagaatcaatattactaggattgaaaatccaatcatgcaaatcccacatca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42021695 |
aatctactattcaaaccactccttgtcctaaacataaaaacagcagaaacagaatcaatattactaggattgaaaatccaatcatgcaaatcccacatca |
42021596 |
T |
|
| Q |
119 |
tatccactaccaaaccatccacaaaaattgtttgattgccacgaaaattccacttcaatctcttcaccttaaacacaatcttcttatccataaacaaaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42021595 |
tatccactaccaaaccatccacaaaaattgtttgattgccacgaaaattccacttcaatctcttcaccttaaacacaatcttcttatccataaacaaaca |
42021496 |
T |
|
| Q |
219 |
taacatgtgactctttgatgttgatcct |
246 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
42021495 |
taacatgtgactctttgatgttgatcct |
42021468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 206
Target Start/End: Complemental strand, 36056149 - 36056063
Alignment:
| Q |
120 |
atccactaccaaaccatccacaaaaattgtttgattgccacgaaaattccacttcaatctcttcaccttaaacacaatcttcttatc |
206 |
Q |
| |
|
|||||| | ||| ||||| ||||||||||||||||| || | ||||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
36056149 |
atccaccaacaacccatcaacaaaaattgtttgattacccctaaaattccacttcaacctcttcacacaaattacaatcttcttatc |
36056063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 36056241 - 36056204
Alignment:
| Q |
19 |
aatctactattcaaaccactccttgtcctaaacataaa |
56 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
36056241 |
aatctactatccaaaccactcctagtcctaaacataaa |
36056204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 20085344 - 20085525
Alignment:
| Q |
19 |
aatctactattcaaaccactccttgtcctaaacataaaaacagcagaaacagaatcaatattactaggattgaaaatccaatcatgcaaatcccacatca |
118 |
Q |
| |
|
|||||||||| ||||||||| ||||| |||||||| ||||||||| || ||||| | || |||||| || | ||||||||| | |||||| | || |
|
|
| T |
20085344 |
aatctactatccaaaccacttcttgttctaaacatgaaaacagcataaccagaagc----ttg--aggattaaagaaccaatcatgaacatcccaaagca |
20085437 |
T |
|
| Q |
119 |
tatccactaccaaaccatccacaaaaattgtttgattgccacgaaaattccacttcaatctcttcaccttaaacacaatcttcttatc |
206 |
Q |
| |
|
||| || | |||||||| |||||||| |||||||| || | ||||||||| | |||||||||||| || |||| |||||||||| |
|
|
| T |
20085438 |
aatcaaccaataaaccatcaacaaaaatggtttgattccctctaaaattccattgcaatctcttcacacgaatcacattcttcttatc |
20085525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University