View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8891_low_52 (Length: 238)

Name: NF8891_low_52
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8891_low_52
NF8891_low_52
[»] chr2 (12 HSPs)
chr2 (1-223)||(14528545-14528767)
chr2 (1-223)||(14542771-14542993)
chr2 (2-223)||(14519936-14520157)
chr2 (1-223)||(14512095-14512317)
chr2 (1-223)||(14533779-14534001)
chr2 (1-223)||(15007617-15007839)
chr2 (16-223)||(15013042-15013249)
chr2 (16-223)||(31968959-31969166)
chr2 (1-223)||(15004194-15004416)
chr2 (16-210)||(15019534-15019728)
chr2 (19-220)||(14546936-14547137)
chr2 (188-222)||(14524886-14524920)
[»] chr4 (1 HSPs)
chr4 (131-220)||(17357066-17357155)


Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14528545 - 14528767
Alignment:
Q  1 ttttgggttctcacatgaatctgctctcaaagctttcaacctcaagcaggttcgtttcaataccccagataagcctgattcagtcaccaccttctttaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||| |||||||||| ||    
T  14528545 ttttgggttctcacatgaatctgctctcaaagctttcaacctcaagcaagttcgtttcaataccgcagataaacctgattcagtcatcaccttctttcaa 14528644  T
Q  101 aaccatggtttttcacacgacaacatacgcatcatcattagaaaagcaccatggttactttcatcacaaccccacaaaatgttattaccaaagtttcaat 200  Q
    || ||||| |||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||| ||| || |||||||||||||    
T  14528645 aatcatggcttttcacacgacaacatacgcatcatgatcagaagagcaccatggttactttcatcacaaccccacaaaaggtttttgccaaagtttcaat 14528744  T
Q  201 tttttctatccaaagatgcttct 223  Q
    ||||||||||||| | |||||||    
T  14528745 tttttctatccaatgctgcttct 14528767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14542771 - 14542993
Alignment:
Q  1 ttttgggttctcacatgaatctgctctcaaagctttcaacctcaagcaggttcgtttcaataccccagataagcctgattcagtcaccaccttctttaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||| |||||||||| ||    
T  14542771 ttttgggttctcacatgaatctgctctcaaagctttcaacctcaagcaagttcgtttcaataccgcagataaacctgattcagtcatcaccttctttcaa 14542870  T
Q  101 aaccatggtttttcacacgacaacatacgcatcatcattagaaaagcaccatggttactttcatcacaaccccacaaaatgttattaccaaagtttcaat 200  Q
    || ||||| |||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||| ||| || |||||||||||||    
T  14542871 aatcatggcttttcacacgacaacatacgcatcatgatcagaagagcaccatggttactttcatcacaaccccacaaaaggtttttgccaaagtttcaat 14542970  T
Q  201 tttttctatccaaagatgcttct 223  Q
    ||||||||||||| | |||||||    
T  14542971 tttttctatccaatgctgcttct 14542993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 14519936 - 14520157
Alignment:
Q  2 tttgggttctcacatgaatctgctctcaaagctttcaacctcaagcaggttcgtttcaataccccagataagcctgattcagtcaccaccttctttaaaa 101  Q
    ||||| |||||||||||||| ||||||||||||||||||  ||  |||||||||||||||||||||||||| |||||||| || | |||||||||| |||    
T  14519936 tttggtttctcacatgaatcggctctcaaagctttcaacaacagacaggttcgtttcaataccccagataatcctgattctgttatcaccttctttcaaa 14520035  T
Q  102 accatggtttttcacacgacaacatacgcatcatcattagaaaagcaccatggttactttcatcacaaccccacaaaatgttattaccaaagtttcaatt 201  Q
    ||||||| ||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  14520036 accatggcttttcacacgataacatacgcatcatcatcacaaaagcaccatggttactttcatcacaaccccacaaaatggtattgccaaagtttcaatt 14520135  T
Q  202 ttttctatccaaagatgcttct 223  Q
    ||| || ||||||| |||||||    
T  14520136 tttactctccaaaggtgcttct 14520157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14512095 - 14512317
Alignment:
Q  1 ttttgggttctcacatgaatctgctctcaaagctttcaacctcaagcaggttcgtttcaataccccagataagcctgattcagtcaccaccttctttaaa 100  Q
    |||||| ||| |||||||||| ||||||||| ||||||||  |||||| ||||||||||||||| ||||||| ||||||||||||| |||||||||| ||    
T  14512095 ttttggtttcacacatgaatcagctctcaaatctttcaactacaagcatgttcgtttcaataccgcagataaacctgattcagtcatcaccttctttcaa 14512194  T
Q  101 aaccatggtttttcacacgacaacatacgcatcatcattagaaaagcaccatggttactttcatcacaaccccacaaaatgttattaccaaagtttcaat 200  Q
    || ||||| |||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||| ||| || |||||||||||||    
T  14512195 aatcatggcttttcacacgacaacatacgcatcatgatcagaagagcaccatggttactttcatcacaaccccacaaaaggtttttgccaaagtttcaat 14512294  T
Q  201 tttttctatccaaagatgcttct 223  Q
    ||||||||||||| | |||||||    
T  14512295 tttttctatccaatgctgcttct 14512317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14533779 - 14534001
Alignment:
Q  1 ttttgggttctcacatgaatctgctctcaaagctttcaacctcaagcaggttcgtttcaataccccagataagcctgattcagtcaccaccttctttaaa 100  Q
    |||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||  ||||||| || | |||||||||| ||    
T  14533779 ttttggattctcacatgaatctgctctcaaagctttcaacaacaagcaggttcgtttcaataccccagataatgctgattctgttatcaccttctttcaa 14533878  T
Q  101 aaccatggtttttcacacgacaacatacgcatcatcattagaaaagcaccatggttactttcatcacaaccccacaaaatgttattaccaaagtttcaat 200  Q
    |||||||||||| || ||  ||||||||||||||||||   ||| ||||| |||||||||||||||||||||||||||| |||||| |||||||||||||    
T  14533879 aaccatggttttccaaactccaacatacgcatcatcatccaaaaggcaccttggttactttcatcacaaccccacaaaaggttattgccaaagtttcaat 14533978  T
Q  201 tttttctatccaaagatgcttct 223  Q
    ||||||||||||| | |||||||    
T  14533979 tttttctatccaatggtgcttct 14534001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 15007617 - 15007839
Alignment:
Q  1 ttttgggttctcacatgaatctgctctcaaagctttcaacctcaagcaggttcgtttcaataccccagataagcctgattcagtcaccaccttctttaaa 100  Q
    |||||| ||||||| | |||||||||| ||||||||||||  ||| |||||||||||||||||||  || |||||| |||||||   |||||||||| ||    
T  15007617 ttttggtttctcacctcaatctgctcttaaagctttcaacaacaaacaggttcgtttcaatacccttgaaaagcctaattcagttctcaccttctttcaa 15007716  T
Q  101 aaccatggtttttcacacgacaacatacgcatcatcattagaaaagcaccatggttactttcatcacaaccccacaaaatgttattaccaaagtttcaat 200  Q
    || ||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  15007717 aatcatggcttttcacacgaaaacatacgcatcatcattagaaaagaaccatggttactttcatcacaaccccacaaaatgttattgccaaagtttgaat 15007816  T
Q  201 tttttctatccaaagatgcttct 223  Q
     |||||||||||||| |||||||    
T  15007817 attttctatccaaaggtgcttct 15007839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 15013042 - 15013249
Alignment:
Q  16 tgaatctgctctcaaagctttcaacctcaagcaggttcgtttcaataccccagataagcctgattcagtcaccaccttctttaaaaaccatggtttttca 115  Q
    |||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| ||||||| || ||||||| |||||||||||||||||    
T  15013042 tgaatcagctctcaaagctttcaacctcaggcaagttcgtttcaataccccagataatcctgactcagtcatcaacttctttcaaaaccatggtttttca 15013141  T
Q  116 cacgacaacatacgcatcatcattagaaaagcaccatggttactttcatcacaaccccacaaaatgttattaccaaagtttcaattttttctatccaaag 215  Q
    |||    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||| ||||||| |    
T  15013142 cactctgacatacgcatcatcatcaaaaaagcaccatggttactttcatcacaaccccacaaaaggttattgcctaagtttcaattttttatatccaacg 15013241  T
Q  216 atgcttct 223  Q
     |||||||    
T  15013242 gtgcttct 15013249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 31968959 - 31969166
Alignment:
Q  16 tgaatctgctctcaaagctttcaacctcaagcaggttcgtttcaataccccagataagcctgattcagtcaccaccttctttaaaaaccatggtttttca 115  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || | |||||||||| |||||||||||||||||    
T  31968959 tgaatcagctctcaaagctttcaacctcaagcaggttcgtttcaatacctcagataatcctgattctgttatcaccttctttcaaaaccatggtttttca 31969058  T
Q  116 cacgacaacatacgcatcatcattagaaaagcaccatggttactttcatcacaaccccacaaaatgttattaccaaagtttcaattttttctatccaaag 215  Q
     ||    ||||||||||| |||| | |||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||| ||||||| |    
T  31969059 aactctgacatacgcatcttcatcaaaaaagcaccatggttactttcatcacaaccccacaaaaggttattgcctaagtttcaattttttatatccaatg 31969158  T
Q  216 atgcttct 223  Q
     |||||||    
T  31969159 gtgcttct 31969166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 15004416 - 15004194
Alignment:
Q  1 ttttgggttctcacatgaatctgctctcaaagctttcaacctcaagcaggttcgtttcaataccccagataagcctgattcagtcaccaccttctttaaa 100  Q
    |||||| ||||||  ||||||  |||||||||||||||||  |||||||||||||||||||||||||||||| |||||||| || | |||||||||| ||    
T  15004416 ttttggtttctcaactgaatcaactctcaaagctttcaacaacaagcaggttcgtttcaataccccagataatcctgattctgttatcaccttctttcaa 15004317  T
Q  101 aaccatggtttttcacacgacaacatacgcatcatcattagaaaagcaccatggttactttcatcacaaccccacaaaatgttattaccaaagtttcaat 200  Q
    || ||||||||||||| ||| ||||||||||||||||| | ||||||||| |||||||||||||| ||||||||||||   |||||  ||||||||||||    
T  15004316 aatcatggtttttcactcgataacatacgcatcatcatcacaaaagcaccttggttactttcatcgcaaccccacaaaggtttattgtcaaagtttcaat 15004217  T
Q  201 tttttctatccaaagatgcttct 223  Q
    ||||||||||||||| |||||||    
T  15004216 tttttctatccaaaggtgcttct 15004194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 15019534 - 15019728
Alignment:
Q  16 tgaatctgctctcaaagctttcaacctcaagcaggttcgtttcaataccccagataagcctgattcagtcaccaccttctttaaaaaccatggtttttca 115  Q
    |||||| |||||||||||||||||||||| ||| |||||||||||||||||||||| |||||| ||||||| || |||||| |||| | |||| ||||||    
T  15019534 tgaatcagctctcaaagctttcaacctcaggcacgttcgtttcaataccccagataggcctgactcagtcatcaacttcttaaaaagctatggcttttca 15019633  T
Q  116 cacgacaacatacgcatcatcattagaaaagcaccatggttactttcatcacaaccccacaaaatgttattaccaaagtttcaattttttctatc 210  Q
     ||  |||||| ||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  15019634 aactccaacattcgcatcatcatcaaaaaagcaccttggttactttcatcacaaccccacaaaatgttattgccaaagtttcaattctttctatc 15019728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 14546936 - 14547137
Alignment:
Q  19 atctgctctcaaagctttcaacctcaagcaggttcgtttcaataccccagataagcctgattcagtcaccaccttctttaaaaaccatggtttttcacac 118  Q
    |||||||||||| |||||||||  ||| ||||||| ||||||  || |||| || ||| ||||||| | ||  ||||| ||||| | || ||||||||||    
T  14546936 atctgctctcaaggctttcaacaacaatcaggttcttttcaaatccgcagaaaatcctaattcagttatcaatttcttcaaaaatcgtgatttttcacac 14547035  T
Q  119 gacaacatacgcatcatcattagaaaagcaccatggttactttcatcacaaccccacaaaatgttattaccaaagtttcaattttttctatccaaagatg 218  Q
        | ||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||  | || || |||||| |||||||||||||||||| ||    
T  14547036 tctgatatacgaatcatcattagaaaagcaccatggttactttcattacaaccccacaatataattttgcccaagtttgaattttttctatccaaaggtg 14547135  T
Q  219 ct 220  Q
    ||    
T  14547136 ct 14547137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 14524886 - 14524920
Alignment:
Q  188 ccaaagtttcaattttttctatccaaagatgcttc 222  Q
    |||||||||||||||||||||||||||| ||||||    
T  14524886 ccaaagtttcaattttttctatccaaaggtgcttc 14524920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 220
Target Start/End: Complemental strand, 17357155 - 17357066
Alignment:
Q  131 atcatcattagaaaagcaccatggttactttcatcacaaccccacaaaatgttattaccaaagtttcaattttttctatccaaagatgct 220  Q
    ||||||| ||||||||||||||||||  |||||| |||| ||||||| ||  | || ||||||||| |||||||||||||||||| ||||    
T  17357155 atcatcaatagaaaagcaccatggtttgtttcattacaatcccacaatataattttgccaaagtttgaattttttctatccaaaggtgct 17357066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University