View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8891_low_54 (Length: 220)
Name: NF8891_low_54
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8891_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 2539556 - 2539350
Alignment:
| Q |
1 |
cgaccacgagctcgacagaacaagcaagaatctgaaaattcaactggtcgaagatcttgctctaagaccgactgtaaagcaagcatgcatgtaaaaagaa |
100 |
Q |
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| T |
2539556 |
cgaccacgagctcgacagaacaagcaagaatctgaaaattcaactggtcgaagatcttgctctaagaccgactgtaaagcaagcatgcatgtaaaaagaa |
2539457 |
T |
|
| Q |
101 |
ggcaagatgggaaatgggtcattcatagctttgtgaaggagcataatcacgaacttttaccagcccaggcagtaagtgaacaaacaagaagaatgtatgc |
200 |
Q |
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| T |
2539456 |
ggcaagatgggaaatgggtcattcatagctttgtgaaggagcataatcacgaacttttaccagcccaggcagtaagtgaacaaacaagaagaatgtatgc |
2539357 |
T |
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| Q |
201 |
tgtgatg |
207 |
Q |
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||||||| |
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| T |
2539356 |
tgtgatg |
2539350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 42012741 - 42012653
Alignment:
| Q |
73 |
tgtaaagcaagcatgcatgtaaaaagaaggcaagatgggaaatgggtcattcatagctttgtgaaggagcataatcacgaacttttacc |
161 |
Q |
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| T |
42012741 |
tgtaaagcaagtatgcatgtaaagagaagacaggatggtaaatggtatgtttatagttttgttaagcagcataatcatgagcttttacc |
42012653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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