View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8891_low_6 (Length: 596)
Name: NF8891_low_6
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8891_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 10 - 578
Target Start/End: Original strand, 35169877 - 35170445
Alignment:
| Q |
10 |
gaagcagagagtacacaatgcattaaacaaagttggagatcgagacacacacgatatcggaaccaaagagctcgaaacaatcctccactcattaactcca |
109 |
Q |
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| T |
35169877 |
gaagcaaagagtacacaatgcattaaacaaagttggagatcgagacacacacgatatcggaaccaaagagctcgaaacaatcctccactcattaactcca |
35169976 |
T |
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| Q |
110 |
cattccatctccccattcctctcttgcattctcgacattcactccgaactaaaaccttccatcagaaaacaatctctcaaactcatcgcctcactcgcca |
209 |
Q |
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| T |
35169977 |
cattccatctccccattcctctcttgcattctcgacattcactccgaactaaaaccttccatcagaaaacaatctctcaaactcatcgcttcactcgcca |
35170076 |
T |
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| Q |
210 |
cagtttatgaatctcttatactcccacatctcaccaaaattgttgcctctgttgttaaatgttttagagatccagattcttctgttagagaaggttgtat |
309 |
Q |
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| T |
35170077 |
cagtttatgaatctcttatactcccacatctcaccaaaattgttgcctctgttgttaaatgttttagagatccagattcttctgttagagaaggttgtgt |
35170176 |
T |
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| Q |
310 |
tgaaattttctctgttttagctttgaaattagcgaatcaaggtaatgaagataaggtgtttgtgttattgtctagtccaatttttgatgctcttgttggt |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35170177 |
tgaaattttctctgttttagctttgaaattagcgaatcaaggtaatgaagataaggtgtttgtgttattgtctagtccaatttttgacgctcttgttggt |
35170276 |
T |
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| Q |
410 |
gaacagaataagcatgttcagtctgcttctgctttttgtcttgctggtattgtacaaaacacgcggaatcctcctgtttcggttttgtatggtatgttga |
509 |
Q |
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| T |
35170277 |
gaacagaataagcatgttcagtctgcttctgctttttgtcttgctggtattgtacaaaacacgcggaatcctcctgtttcggttttgtatggtatgttga |
35170376 |
T |
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| Q |
510 |
ttaggattcttaagttgcttaagaatccacattttatggcgaaacctgcgttgattgagttgaataggt |
578 |
Q |
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| T |
35170377 |
ttaggattcttaagttgcttaagaatccacattttatggcgaaacctgcgttgattgagttgaataggt |
35170445 |
T |
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