View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8891_low_7 (Length: 576)
Name: NF8891_low_7
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8891_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 14854025 - 14854371
Alignment:
| Q |
1 |
cattcatttttcggtacaccaaatctaaacccaaacccagatccaccatcatcatagataaacactaacataacaatatctataacaatgactttatttc |
100 |
Q |
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| T |
14854025 |
cattcatttttcgttacaccaaatctaaacccaaacccagatccaccatcatcatagataaacactaacataacaatatctataacaatgactttatttc |
14854124 |
T |
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| Q |
101 |
cccaaattaccctcacatttatgctatatttcctaatcctatccccaacaccatctttctctttcaacctcacctccctcctttcaaccttccctgaatt |
200 |
Q |
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| T |
14854125 |
cccaaattaccctcacatttatgctatatttcctaatcctatccccaacaccatctttctctttcaacctcacctccctcctttcaaccttccctgaatt |
14854224 |
T |
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| Q |
201 |
atcaacattcacctccctactttcttccacaccctctctcaccgccgatctttcccaccgcacttcactctctctcctcgccgtccccaacacctatctc |
300 |
Q |
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| T |
14854225 |
atcaacattcacctccctactttcttccacaccccctctcaccgctgatctttcccaccgcacttcactctctctcctcgccgtccccaacacctatctc |
14854324 |
T |
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| Q |
301 |
accaccgaccctcacctccataacctctccccctccgctctcgccga |
347 |
Q |
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| T |
14854325 |
accaccgaccctcacctccataacctctccccctccgccctcgccga |
14854371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 415 - 560
Target Start/End: Original strand, 14854439 - 14854584
Alignment:
| Q |
415 |
ggtaaactcgtcaccactctcttccaaaccaccggccgcgccaccaacaacttcggctccgttaatatcacccactccccgaacactaacactgttacaa |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14854439 |
ggtaaactcgtcaccactctcttccaaaccaccggccgcgccaccaacaacttcggctccgttaatatcacccactccccgaacactaacactgttacaa |
14854538 |
T |
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| Q |
515 |
tccattccccagcaccttactcatcctcaaacgccaccgtgctttc |
560 |
Q |
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| T |
14854539 |
tccattccccagcaccttactcatcctcaaacgccaccgtgctttc |
14854584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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