View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8891_low_8 (Length: 514)
Name: NF8891_low_8
Description: NF8891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8891_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 302
Target Start/End: Complemental strand, 17196703 - 17196414
Alignment:
| Q |
13 |
agcacagagcgtgagaaatggagacaccaccctcaaccggcgccgtgaagaagaaggagacaagaggacgcaaacctaaacccaaggaagacaagagaga |
112 |
Q |
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| T |
17196703 |
agcacagagagtgagaaatggagacaccaccctcaaccggcgccgtgaagaagaaggagacaagaggacgcaaacctaaacccaaggaagacaagagaga |
17196604 |
T |
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| Q |
113 |
agaaccatcacaagtgaagacaccgagagaatcgaagaaggaaaagcaacagcaacagcttcatcagcagcagcaacaacaagcttctgttgatgagaag |
212 |
Q |
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| T |
17196603 |
agaaccatcacaagtgaagtcaccgagagaatcgaagaaggaaaagcaacagcaacagcttcatcagcagcagcaacaacaagcttctgttgatgagaag |
17196504 |
T |
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| Q |
213 |
tactctcaatggaaatctcttgttcctgttctttatgattggctcgctaatcataacctcgtttggccttctctctcttgccggttaggg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17196503 |
tactctcaatggaaatctcttgttcctgttctttatgattggcttgctaatcataacctcgtttggccttctctctcttgccggttaggg |
17196414 |
T |
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