View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8892_high_4 (Length: 324)
Name: NF8892_high_4
Description: NF8892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8892_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 28806478 - 28806772
Alignment:
| Q |
18 |
atatataaataaagatatgtaaaagattcaactgattttacaaagtgtatcaaagctactaaattacaataatttcctaaagccatgatgtgaaccaggt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28806478 |
atatataaataaagatatgtaaaagattcaactgattttacaaagtgtatcaaagctactaaattacaataatttcctaaagccatggtgtgaaccaggt |
28806577 |
T |
|
| Q |
118 |
ctcatatcagaaaactagtctactggcagcacgtaaggcaaaaccttagtatgtact-gagcctgtttgtgccacactcatcatcacatcttcaaacgaa |
216 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28806578 |
ctcatatcagaaaactagtctattggcagcacgtaaggcaaaaccttagtatgtactggaacctgtttgtgccacactcatcatcacatcttcaaacgaa |
28806677 |
T |
|
| Q |
217 |
gttgcatctaccatgtatcagaaaaatagtgcatgaaaagtataattcaaattgggtgtcaagtctcaatgcttataaaacttcaattctctgct |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28806678 |
gttgcatctaccatgtatcagaaaaatagtgcatgaaaaatataattcaaatcaggtgtcaagtctcaacgcttataaaacttcaattctctgct |
28806772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University