View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8892_low_1 (Length: 630)
Name: NF8892_low_1
Description: NF8892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8892_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 139; Significance: 2e-72; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 418 - 609
Target Start/End: Complemental strand, 30685443 - 30685250
Alignment:
| Q |
418 |
attattttgattgtcctcttcaccattaattttggaggtatcatcatgtcatacaatttaggcatatcaactttataagaataactttaatagttaggtt |
517 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
30685443 |
attattttgattgtcctcttctccattaattttggaggtatcatcatgttatacaatttaggcatatcagccttataagaataactttaatagttaggtt |
30685344 |
T |
|
| Q |
518 |
g--aaataaattttaccttacttcagagtctttactttcatttttatgtcataataaatcatttagatgtcctgttgggttttagaagatatga |
609 |
Q |
| |
|
| |||||||||||||||||||||| |||||||| ||| ||||| || ||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
30685343 |
gataaataaattttaccttacttcatagtctttatttttattttgatatcataataaataatttagatgtcttgttgggttttagaagatatga |
30685250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 400 - 609
Target Start/End: Complemental strand, 30721272 - 30721053
Alignment:
| Q |
400 |
cttactttaagtcaataaa-----ttattttgattgtcctcttcaccattaattttggaggtatcatcatgtcatacaatttaggcatatcaactttata |
494 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||| | ||||| |
|
|
| T |
30721272 |
cttactttaagtcaataaagattattattttgattgtcctcttctccattaattttgaaggtatcatcatgttatacaatttaggcatatcagccttata |
30721173 |
T |
|
| Q |
495 |
agaataactttaatagttaggttg--aaataaattttaccttacttcagagtctttactttcatttttatgtcataata---aatcatttagatgtcctg |
589 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||| |||||||| ||| ||||| ||||||||||| ||| ||||||||||| || |
|
|
| T |
30721172 |
agaataactttaagagttaggttgataaataaattttaccttacttcatagtctttatttttattttgatgtcataataaataataatttagatgtcttg |
30721073 |
T |
|
| Q |
590 |
ttgggttttagaagatatga |
609 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
30721072 |
ttgggttttagaagatatga |
30721053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 96 - 219
Target Start/End: Complemental strand, 30721941 - 30721815
Alignment:
| Q |
96 |
tagtaacattattttcttgactttttctctt---attacagcaggtgatgaatgtaaaattgatgatgattgtccaaaaagtgggaacttattttatatt |
192 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
30721941 |
tagtaacattattttcttgactttttttcttcttattacagcaagtgatgaatgtcaaattgatgctgattgtccaaaaagtgggaacttgttttatatt |
30721842 |
T |
|
| Q |
193 |
tataaatgcattaatcacaaatgtgaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
30721841 |
tataaatgcattaatcacaaatgtgaa |
30721815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 30690412 - 30690228
Alignment:
| Q |
11 |
tttggtgttggtaagccatttcttttattcttttnnnnnnnnnt-ctttactttgtagcttgtacacaatcatttaacatattttatagtaacattattt |
109 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | ||||||||||||||| |||||||||||||||| ||||| |||||||| |
|
|
| T |
30690412 |
tttggtgttggtaagccattccttttattcttttcaaatttctttctttactttgtagctcgtacacaatcatttaa---------tagtagcattattt |
30690322 |
T |
|
| Q |
110 |
tcttgactttttctctt-----attacagcaggtgatgaatgtaaaattgatgatgattgtccaaaaagtgggaacttattttatatttataaa |
198 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||||| ||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30690321 |
tcttgactttttttcttttcttattacagcacgtgataaatgtcaaattgatgctgattgtccaaaaagtgggaacttgttttatatttataaa |
30690228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 30701686 - 30701628
Alignment:
| Q |
232 |
tctattagtttcggaccatggattgtacaaaaacatcctacaaaggagaatgggttata |
290 |
Q |
| |
|
||||| |||||| |||||||| || ||||||||| |||||||||||||||||||||| |
|
|
| T |
30701686 |
tctatgagtttcaaaccatggagagtgcaaaaacatactacaaaggagaatgggttata |
30701628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 30722015 - 30721982
Alignment:
| Q |
11 |
tttggtgttggtaagccatttcttttattctttt |
44 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
30722015 |
tttggtgttggtaagccattccttttattctttt |
30721982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 30721347 - 30721303
Alignment:
| Q |
364 |
atgaaacttatagttatagtgctctcctataataagcttacttta |
408 |
Q |
| |
|
||||||||| ||||||||||| ||| || |||||||||||||||| |
|
|
| T |
30721347 |
atgaaacttgtagttatagtgttctactgtaataagcttacttta |
30721303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University