View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8892_low_11 (Length: 314)

Name: NF8892_low_11
Description: NF8892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8892_low_11
NF8892_low_11
[»] chr1 (8 HSPs)
chr1 (25-298)||(41453501-41453772)
chr1 (1-132)||(41426407-41426538)
chr1 (6-132)||(41431800-41431926)
chr1 (10-132)||(41442407-41442529)
chr1 (27-106)||(52472986-52473066)
chr1 (7-65)||(41448905-41448963)
chr1 (218-298)||(41426252-41426332)
chr1 (26-132)||(7238212-7238327)
[»] chr2 (4 HSPs)
chr2 (1-130)||(33370088-33370217)
chr2 (6-128)||(33363748-33363870)
chr2 (13-132)||(5839274-5839393)
chr2 (193-292)||(33363443-33363542)
[»] scaffold0648 (2 HSPs)
scaffold0648 (5-132)||(5895-6022)
scaffold0648 (193-298)||(5735-5840)
[»] scaffold0274 (2 HSPs)
scaffold0274 (5-132)||(17436-17563)
scaffold0274 (193-298)||(17618-17723)
[»] chr7 (2 HSPs)
chr7 (5-132)||(7762975-7763102)
chr7 (193-258)||(7763157-7763222)
[»] chr8 (1 HSPs)
chr8 (9-126)||(21223848-21223965)
[»] chr4 (1 HSPs)
chr4 (13-100)||(1004661-1004748)


Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 25 - 298
Target Start/End: Complemental strand, 41453772 - 41453501
Alignment:
Q  25 aaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcaagagatccatccttgattcataaactctcacaaatattgtat 124  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41453772 aaaaataaaagaccgtcatggtaaggagtctcttctgctccaataatcacagccctcaagagatccatccttgattcatagactctcacaaatattgtat 41453673  T
Q  125 ctgatgagtattnnnnnnnnnnnnnnnnnnnnngaagaagataagattgagaaatataccataatcatgtttcacactatggtaattaaaagttcttgat 224  Q
    |||||||| |||                      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41453672 ctgatgagcattaaaaaaagtcaaaaaaaaaaa-aagaagataagattgagaaatataccataatcatgtttcacactatggtaattaaaagttcttgat 41453574  T
Q  225 cccaatttcataacaaatatgtcgagtggacaccaacgaggaaaaatttggaaatctttcaaaaaggaagtatt 298  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41453573 cccaatttcataacaaatatgt-gagtggacactaacgaggaaaaatttggaaatctttcaaaaaggaagtatt 41453501  T

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Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 41426538 - 41426407
Alignment:
Q  1 tatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcaagagatccatccttgatt 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  41426538 tatccagggggaaagtaaacatcaaaaaagaaaagactgtcatggtaaggagtcccttttgctccaataatcacagccctcatgagatccatccttgatt 41426439  T
Q  101 cataaactctcacaaatattgtatctgatgag 132  Q
    || | |||||||||||||||||||||||||||    
T  41426438 cacagactctcacaaatattgtatctgatgag 41426407  T

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Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 6 - 132
Target Start/End: Complemental strand, 41431926 - 41431800
Alignment:
Q  6 agggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcaagagatccatccttgattcataa 105  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |     
T  41431926 aggggggaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaataatcacagccctcatgagatccatccttgattcgaag 41431827  T
Q  106 actctcacaaatattgtatctgatgag 132  Q
    |||||||||||||||||||||||||||    
T  41431826 actctcacaaatattgtatctgatgag 41431800  T

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Target: chr1; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 10 - 132
Target Start/End: Complemental strand, 41442529 - 41442407
Alignment:
Q  10 ggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcaagagatccatccttgattcataaactc 109  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  | ||||    
T  41442529 ggaaagtgtacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagctctcaagagatccatccttgattcgcagactc 41442430  T
Q  110 tcacaaatattgtatctgatgag 132  Q
    ||||||||||||||| |||||||    
T  41442429 tcacaaatattgtatttgatgag 41442407  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 52473066 - 52472986
Alignment:
Q  27 aaagaaaagaccgtcatgg-taaggagtcccttctgctccaataatcacagccctcaagagatccatccttgattcataaa 106  Q
    |||| |||||||||||| | |||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52473066 aaagtaaagaccgtcattgataaggagttccatctgctccaataattacagccctcaagagatccatccttgattcataaa 52472986  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 41448963 - 41448905
Alignment:
Q  7 gggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctcc 65  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  41448963 gggggaaagtaaacatcaaaaaagaaaagaccgttatggtaaggagtctcttctgctcc 41448905  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 298
Target Start/End: Complemental strand, 41426332 - 41426252
Alignment:
Q  218 tcttgatcccaatttcataacaaatatgtcgagtggacaccaacgaggaaaaatttggaaatctttcaaaaaggaagtatt 298  Q
    ||||||| |||| || | ||||||||| | |||||||||||| | ||||||||||||| ||| |||||| ||||| |||||    
T  41426332 tcttgattccaactttagaacaaatatatggagtggacaccaccaaggaaaaatttgggaatatttcaacaaggatgtatt 41426252  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 7238212 - 7238327
Alignment:
Q  26 aaaagaaaagaccgtcatggtaaggagtcccttc---------tgctccaataatcacagccctcaagagatccatccttgattcataaactctcacaaa 116  Q
    |||||||||||||||||||||||| |||||||||         |||||||||| | ||||||| |  || || |||| |||||||||||||||  |||||    
T  7238212 aaaagaaaagaccgtcatggtaagaagtcccttcactcccttgtgctccaatagttacagcccgcgtgacattcatcattgattcataaactcgaacaaa 7238311  T
Q  117 tattgtatctgatgag 132  Q
    ||||| |||| |||||    
T  7238312 tattgaatctaatgag 7238327  T

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Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 33370217 - 33370088
Alignment:
Q  1 tatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcaagagatccatccttgatt 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33370217 tatccagggggaaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaataatcacagccctcatgagatccatccttgatt 33370118  T
Q  101 cataaactctcacaaatattgtatctgatg 130  Q
    | || |||||||||||||||||||||||||    
T  33370117 cgtagactctcacaaatattgtatctgatg 33370088  T

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Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 6 - 128
Target Start/End: Complemental strand, 33363870 - 33363748
Alignment:
Q  6 agggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcaagagatccatccttgattcataa 105  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |     
T  33363870 aggggggaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaataatcacagctctcatgagatccatccttgattcgaag 33363771  T
Q  106 actctcacaaatattgtatctga 128  Q
    | |||||||||||||||||||||    
T  33363770 attctcacaaatattgtatctga 33363748  T

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Target: chr2; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 5839274 - 5839393
Alignment:
Q  13 aagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcaagagatccatccttgattcataaactctca 112  Q
    ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||| ||||||||||||||||  |    
T  5839274 aagtaaagatcgaaaaagaaaagaccgtcatggtaaggagtcccgtctgctccaataattacagccctcatgagatccattcttgattcataaactcgaa 5839373  T
Q  113 caaatattgtatctgatgag 132  Q
    ||||||||| ||||||||||    
T  5839374 caaatattgaatctgatgag 5839393  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 292
Target Start/End: Complemental strand, 33363542 - 33363443
Alignment:
Q  193 gtttcacactatggtaattaaaagttcttgatcccaatttcataacaaatatgtcgagtggacaccaacgaggaaaaatttggaaatctttcaaaaagga 292  Q
    |||| ||| ||||| | ||| ||||||||||| ||||||||| ||||||||| | | |||||| ||| |||||||| |||||| |||||||||| |||||    
T  33363542 gtttgacattatggcatttataagttcttgattccaatttcagaacaaatatatggtgtggacgccaccgaggaaatatttggcaatctttcaacaagga 33363443  T

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Target: scaffold0648 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 6022 - 5895
Alignment:
Q  5 cagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcaagagatccatccttgattcata 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |    
T  6022 cagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcatgagatccattcttgattcaca 5923  T
Q  105 aactctcacaaatattgtatctgatgag 132  Q
     |||||||||||||||||||||||||||    
T  5922 gactctcacaaatattgtatctgatgag 5895  T

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Target: scaffold0648; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 298
Target Start/End: Complemental strand, 5840 - 5735
Alignment:
Q  193 gtttcacactatggtaattaaaagttcttgatcccaatttcataacaaatatgtcgagtggacaccaacgaggaaaaatttggaaatctttcaaaaagga 292  Q
    |||||||| | ||||| ||| ||||||||||| | || || | ||||||||| | |||||||||||| | ||||||||||||| ||| |||||| |||||    
T  5840 gtttcacattttggtatttataagttcttgattcaaactttagaacaaatatatggagtggacaccaccaaggaaaaatttgggaatatttcaacaagga 5741  T
Q  293 agtatt 298  Q
     |||||    
T  5740 tgtatt 5735  T

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Target: scaffold0274 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 17436 - 17563
Alignment:
Q  5 cagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcaagagatccatccttgattcata 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |    
T  17436 cagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcatgagatccattcttgattcaca 17535  T
Q  105 aactctcacaaatattgtatctgatgag 132  Q
     |||||||||||||||||||||||||||    
T  17536 gactctcacaaatattgtatctgatgag 17563  T

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Target: scaffold0274; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 298
Target Start/End: Original strand, 17618 - 17723
Alignment:
Q  193 gtttcacactatggtaattaaaagttcttgatcccaatttcataacaaatatgtcgagtggacaccaacgaggaaaaatttggaaatctttcaaaaagga 292  Q
    |||||||| | ||||| ||| ||||||||||| | || || | ||||||||| | |||||||||||| | ||||||||||||| ||| |||||| |||||    
T  17618 gtttcacattttggtatttataagttcttgattcaaactttagaacaaatatatggagtggacaccaccaaggaaaaatttgggaatatttcaacaagga 17717  T
Q  293 agtatt 298  Q
     |||||    
T  17718 tgtatt 17723  T

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Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 7762975 - 7763102
Alignment:
Q  5 cagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcaagagatccatccttgattcata 104  Q
    ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||| ||    
T  7762975 cagggggaaagtataaatcaaaaaagaaaagaccatcatggtaaggagtcccttgtgctccaataatcacagctctcatgagatccatccttgattcgta 7763074  T
Q  105 aactctcacaaatattgtatctgatgag 132  Q
     |||||||||||||||||||||||||||    
T  7763075 gactctcacaaatattgtatctgatgag 7763102  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 7763157 - 7763222
Alignment:
Q  193 gtttcacactatggtaattaaaagttcttgatcccaatttcataacaaatatgtcgagtggacacc 258  Q
    |||||||| ||||||| ||| | ||||||||| ||||||||| ||||||||| | |||||||||||    
T  7763157 gtttcacattatggtatttatatgttcttgattccaatttcagaacaaatatatggagtggacacc 7763222  T

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Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 21223848 - 21223965
Alignment:
Q  9 gggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcaagagatccatccttgattcataaact 108  Q
    ||||||| ||| |||||||||||| || || ||||| ||||| || || |||||||||||||||||||||||||| ||||| || |||||||||||||||    
T  21223848 gggaaagaaaaaatcaaaaaagaataggccatcatgataaggggttccctctgctccaataatcacagccctcaacagatctattcttgattcataaact 21223947  T
Q  109 ctcacaaatattgtatct 126  Q
    || |||||||||| ||||    
T  21223948 ctgacaaatattgaatct 21223965  T

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Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 1004748 - 1004661
Alignment:
Q  13 aagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcaagagatccatccttgatt 100  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||| || ||||||||| ||||||||||| |||| |||| ||||||    
T  1004748 aagtaaaaatcaaaaaagaaaagaccgtgctggtaaggagtcccttttggtccaataattacagccctcaacagattcatctttgatt 1004661  T

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