View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8892_low_15 (Length: 240)
Name: NF8892_low_15
Description: NF8892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8892_low_15 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 33875300 - 33875076
Alignment:
| Q |
16 |
caaaactcagtgcaaaagtaagattatttatgttcaatacttgacacatttgcttatatattannnnnnnagcattcgttttttatgataatggtcgcag |
115 |
Q |
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| T |
33875300 |
caaaactcagtgcaaaagtaagattatttatgttcaatacttgacacatttgcttatatattatttttttagcatttgttttttatgataatggtcgcag |
33875201 |
T |
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| Q |
116 |
taagggttgcagtcactatgtgatccttgatattgtggagagtcacagtcgaatgggactgatgcaacatcaattgcagtcacattgcttatgataagag |
215 |
Q |
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| T |
33875200 |
taagggttgcagtcactatgtgatccttgatattgtggagagtcacagtcgaatgggactgatgcaacatcaattgcagtcacattgcttatgataagag |
33875101 |
T |
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| Q |
216 |
agtacctgtgaatttcataaaagaa |
240 |
Q |
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| T |
33875100 |
agtacctgtgaatttcataaaagaa |
33875076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 33879574 - 33879512
Alignment:
| Q |
16 |
caaaactcagtgcaaaagtaagattatttatgttcaatacttgacacatttgcttatatatta |
78 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33879574 |
caaaactcagtgcaaaagtaagattatttatgttcaatacttgacacatttgcatatatatta |
33879512 |
T |
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