View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8892_low_3 (Length: 606)
Name: NF8892_low_3
Description: NF8892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8892_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 1 - 590
Target Start/End: Complemental strand, 6387590 - 6387003
Alignment:
| Q |
1 |
gaacattcgatctttctaccccaaacatgatgagaactaattagtgatcttatcatttttcacgatgtcacttttatctttattttttctnnnnnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6387590 |
gaacattcgatctttctaccccaaacatgatgagaactaattagtgatcttatcatttttcacgatatcacttttatctttattttttctaaaaaaaaa- |
6387492 |
T |
|
| Q |
101 |
ngtaaattttatatctgaaatgtagcaagctaaggtcatatttcagttacaaaccttgccacttttcatcatgttcacaacattaacagcactaaagtca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6387491 |
-gtaaattttatatctgaaatgtagcaagctaaggtcatatttcagttacaaaccttgccacttttcatcatgttcacaacattaacagcactaaagtca |
6387393 |
T |
|
| Q |
201 |
acaacattgttacccactttagctcgaggcccaccaaagctcaattggtcttcacaacctctcttcttattgtttctttcgtttgtgtaattttcttctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6387392 |
acaacattgttacccactttagctcgaggcccaccaaagctcaattggtcttcacaacctctcttcttattgtttctttcgtttgtgtaattttcttctc |
6387293 |
T |
|
| Q |
301 |
tcaaccaaacaccaaacaatttcaaacaatctcttccactttcttcattttcaccaaccgcattttgaacagattcacaacaatttccttgttgcttcat |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6387292 |
tcaaccaaacaccaaacaatttcaaacaatctcttccactttcttcattttcaccaaccgcattttgaacagattcacaacaatttccttgttgcttcat |
6387193 |
T |
|
| Q |
401 |
tatgcgatcgatttgatctggacccacatttaaattgtcttttaaaaaagccaccaactcttcgcattgtttctttgcacgtgccaattcacaatttaag |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6387192 |
tatgcgatcgatttgatctggacccacatttaaattgtcttttaaaaaagccaccaactcttcgcattgtttctttgcacgtgccaattcacaatttaag |
6387093 |
T |
|
| Q |
501 |
atttcgttgtcnnnnnnnagtttctcattttcgctcgataagttgacacattgaggaagtgttgttgtttccactgatccagggtttttg |
590 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6387092 |
gtttcgttgtctttttttagtttctcattttcgctcgataagttgacacattgaggaagtgttgttgtttccactgatccagggtttttg |
6387003 |
T |
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