View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8892_low_5 (Length: 464)
Name: NF8892_low_5
Description: NF8892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8892_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 3 - 300
Target Start/End: Original strand, 13847396 - 13847693
Alignment:
| Q |
3 |
aaatcagttttctctgtaacgaagaaaaggactgaaaaacagaagtgatgtaaatatactgattaactgaactatcaaaccttcacatacataattttct |
102 |
Q |
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| T |
13847396 |
aaatcagttttctctgtaacgaagaaaaggactgaaaaacagaagtgatgtaaatatactgattaactgaactatcaaaccttcacatacataattttct |
13847495 |
T |
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| Q |
103 |
tgtagaatcttgaaatatctattaaggcattcaataatgttgagccatgaacgagttgtttcgctgttatcgtttcctgtttggtgctcctgaagtaata |
202 |
Q |
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| T |
13847496 |
tttagaatcttgaaatatctattaaggcattcaataatgttgagccatgaaccagttggttcgctgttatcgtttccagtttggtgctcctgaagtcata |
13847595 |
T |
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| Q |
203 |
aaataacatgcaagtggaataagcataatgagtaatgacactgacattgtcaacaagacacagatgcagaaaacatgttcaagcgccaagccaactac |
300 |
Q |
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| T |
13847596 |
aaataacatgtaagtggagtaagcatagtgagtaatgacactgacattgtcaacaagacacagatgcagaaaacatgttcaagcaccaagccaactac |
13847693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 3 - 308
Target Start/End: Original strand, 13838738 - 13839043
Alignment:
| Q |
3 |
aaatcagttttctctgtaacgaagaaaaggactgaaaaacagaagtgatgtaaatatactgattaactgaactatcaaaccttcacatacataattttct |
102 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
13838738 |
aaatcagttttctctataacaaagaaaaggactgaaaaacagaagtgatgtaaatgtactgattcactgaattatcaaaccttcacatacataattttct |
13838837 |
T |
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| Q |
103 |
tgtagaatcttgaaatatctattaaggcattcaataatgttgagccatgaacgagttgtttcgctgttatcgtttcctgtttggtgctcctgaagtaata |
202 |
Q |
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| T |
13838838 |
ttcagaatcttgaaatatctattaaggcattcaataatgttgagccatgaacgagttgtttcgctgttatcgtttcctgtttggtgctcctgaagtcata |
13838937 |
T |
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| Q |
203 |
aaataacatgcaagtggaataagcataatgagtaatgacactgacattgtcaacaagacacagatgcagaaaacatgttcaagcgccaagccaactacgg |
302 |
Q |
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| T |
13838938 |
aaataacatgtaagtggaataatcataatgagtaatggcactgacattgtcaagaagacatagatgcagaagacatattcaagcaacaagccaactacgg |
13839037 |
T |
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| Q |
303 |
gttcca |
308 |
Q |
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||||| |
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| T |
13839038 |
tttcca |
13839043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 344 - 448
Target Start/End: Original strand, 13847704 - 13847808
Alignment:
| Q |
344 |
ttttgctgcatattgctatcatacacatggaaatgcataaaaggcatacttgatgatgaaagatacaatcatcataccttgatgcaagaagaaagaagag |
443 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13847704 |
ttttgcagcatattgctatcatacacatggaaatgcataaaaggcatacttgatgatgaaagatacaatcatcataccttgatgcaagaagaaagaagag |
13847803 |
T |
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| Q |
444 |
gggac |
448 |
Q |
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||||| |
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| T |
13847804 |
gggac |
13847808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 340 - 448
Target Start/End: Original strand, 13839077 - 13839185
Alignment:
| Q |
340 |
aatattttgctgcatattgctatcatacacatggaaatgcataaaaggcatacttgatgatgaaagatacaatcatcataccttgatgcaagaagaaaga |
439 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
13839077 |
aatattttgccgcatattgctatcatacacatggaaatgcataaaaggcatacttgatgatgaaatatacaatcaccataccttgatgcaagaagaaaga |
13839176 |
T |
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| Q |
440 |
agaggggac |
448 |
Q |
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||||||||| |
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| T |
13839177 |
agaggggac |
13839185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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