View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8892_low_6 (Length: 444)

Name: NF8892_low_6
Description: NF8892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8892_low_6
NF8892_low_6
[»] chr5 (14 HSPs)
chr5 (176-432)||(27169966-27170222)
chr5 (190-432)||(7766883-7767124)
chr5 (192-432)||(18696938-18697179)
chr5 (302-432)||(41355424-41355553)
chr5 (176-252)||(6030388-6030464)
chr5 (306-423)||(7271893-7272006)
chr5 (181-245)||(7271828-7271892)
chr5 (305-432)||(6030268-6030391)
chr5 (305-373)||(26656827-26656894)
chr5 (305-373)||(26928414-26928481)
chr5 (207-262)||(41355570-41355625)
chr5 (207-250)||(38958230-38958273)
chr5 (207-252)||(26656785-26656830)
chr5 (207-252)||(26928372-26928417)
[»] chr2 (13 HSPs)
chr2 (176-432)||(17375266-17375521)
chr2 (176-413)||(17281841-17282078)
chr2 (190-427)||(1895413-1895649)
chr2 (176-417)||(1551491-1551731)
chr2 (181-252)||(34660280-34660351)
chr2 (305-432)||(4869707-4869830)
chr2 (176-292)||(3921581-3921697)
chr2 (176-252)||(4869634-4869710)
chr2 (302-354)||(3921684-3921736)
chr2 (367-413)||(4140576-4140622)
chr2 (284-360)||(38531148-38531225)
chr2 (340-432)||(34660352-34660440)
chr2 (214-263)||(38531237-38531286)
[»] chr6 (3 HSPs)
chr6 (176-427)||(21881456-21881706)
chr6 (176-398)||(20740567-20740788)
chr6 (190-263)||(30845560-30845633)
[»] chr4 (11 HSPs)
chr4 (190-432)||(53202269-53202510)
chr4 (176-432)||(23054112-23054366)
chr4 (192-427)||(47518334-47518568)
chr4 (207-359)||(6410011-6410164)
chr4 (176-265)||(34227062-34227151)
chr4 (283-339)||(12485357-12485413)
chr4 (280-343)||(24957572-24957635)
chr4 (190-249)||(12469342-12469401)
chr4 (295-338)||(55728934-55728977)
chr4 (207-249)||(12466698-12466740)
chr4 (283-339)||(12469233-12469289)
[»] chr8 (3 HSPs)
chr8 (181-432)||(10408819-10409069)
chr8 (192-428)||(5994635-5994870)
chr8 (191-359)||(6444039-6444208)
[»] chr7 (1 HSPs)
chr7 (190-432)||(3302578-3302819)
[»] chr1 (12 HSPs)
chr1 (190-432)||(34117975-34118218)
chr1 (302-432)||(34655070-34655199)
chr1 (207-360)||(11407933-11408087)
chr1 (301-427)||(39708905-39709029)
chr1 (181-292)||(34654972-34655083)
chr1 (305-432)||(615823-615946)
chr1 (181-290)||(26236671-26236780)
chr1 (190-252)||(615764-615826)
chr1 (207-292)||(39709015-39709100)
chr1 (195-263)||(14350994-14351062)
chr1 (190-263)||(11814816-11814889)
chr1 (210-254)||(32058699-32058743)
[»] chr3 (2 HSPs)
chr3 (190-252)||(18269763-18269825)
chr3 (176-259)||(43275968-43276051)
[»] scaffold0157 (1 HSPs)
scaffold0157 (283-339)||(35064-35120)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 176 - 432
Target Start/End: Complemental strand, 27170222 - 27169966
Alignment:
Q  176 gacctaaaattagaaccaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaa 275  Q
    |||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  27170222 gacccaaaattagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataacagttcgtaagtaaagccaaa 27170123  T
Q  276 tatgatccatcaccaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcc 375  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27170122 tatgatccattaccaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcc 27170023  T
Q  376 tgagacccacgaaaaccaaacaaccaccggaaagcatccaacaacacaccacgaaac 432  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  27170022 tgagacccacgaaaaccaaacaaccatcggaaagcatccagcaacacaccacgaaac 27169966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 190 - 432
Target Start/End: Complemental strand, 7767124 - 7766883
Alignment:
Q  190 accaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcacc 289  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| || | | |||||||||||||||    
T  7767124 accaccatgaaacccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataacaattcataagtgaacctagatatgatccatcacc 7767025  T
Q  290 accatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcctgagacccacgaaa 389  Q
    ||||| ||| |||||| |||||||| || ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||    
T  7767024 accattgtggccgatcaatcaccacctatgttgcgagcaaacataacctccatcacaaccaagagag-aaaacaaatcaaatagtctgagacccacgaaa 7766926  T
Q  390 accaaacaaccaccggaaagcatccaacaacacaccacgaaac 432  Q
    |||||||||||||||| ||||||||||| ||||||||||||||    
T  7766925 accaaacaaccaccggcaagcatccaacgacacaccacgaaac 7766883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 192 - 432
Target Start/End: Original strand, 18696938 - 18697179
Alignment:
Q  192 caccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccac 291  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||  || | | |||||||||||||||||    
T  18696938 caccatgaaaaacgccatgaagcaccacaaaccaacacaaccaaagatccaccgaacccataacagttcataagcgaacctagatatgatccatcaccac 18697037  T
Q  292 catcgtgaccgatccatcaccacttacgttgcgagcaaacataacctccac--cacaaccaagagagaaaaacgaatcaaatagcctgagacccacgaaa 389  Q
    ||||||||| ||||||||||||| || |||||| |||||||||||||||||  ||||||||| | | |||||| |||||||||| |||||||||||||||    
T  18697038 catcgtgactgatccatcaccacctatgttgcgggcaaacataacctccaccacacaaccaatata-aaaaacaaatcaaatagtctgagacccacgaaa 18697136  T
Q  390 accaaacaaccaccggaaagcatccaacaacacaccacgaaac 432  Q
    |||||||||||||||  ||  ||||||| ||||||||||||||    
T  18697137 accaaacaaccaccgacaattatccaacgacacaccacgaaac 18697179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 302 - 432
Target Start/End: Complemental strand, 41355553 - 41355424
Alignment:
Q  302 gatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcctgagacccacgaaaaccaaacaacca 401  Q
    ||||||||||| | || |||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||| ||| ||||| |||| |||||||||    
T  41355553 gatccatcaccgcctatgttgcgagcaaatataacctccaccacaaccaagagagaaaa-caaatcaaatagcctaagatccacggaaactaaacaacca 41355455  T
Q  402 ccggaaagcatccaacaacacaccacgaaac 432  Q
    |||| ||||||||||| ||||||||| ||||    
T  41355454 ccggcaagcatccaacgacacaccacaaaac 41355424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 6030464 - 6030388
Alignment:
Q  176 gacctaaaattagaaccaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 252  Q
    |||| ||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6030464 gacccaaaatcagcaccaccatgaaaaccgtcaggaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 6030388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 306 - 423
Target Start/End: Original strand, 7271893 - 7272006
Alignment:
Q  306 catcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcctgagacccacgaaaaccaaacaaccaccgg 405  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    || ||||  |||||||||||||||| |     
T  7271893 catcaccacctatgttgcgagcaaacataacctccaccacaaccaagagag-aaaacgaatcaaatag---tagccccaataaaaccaaacaaccactga 7271988  T
Q  406 aaagcatccaacaacaca 423  Q
     ||||||||||| |||||    
T  7271989 caagcatccaacgacaca 7272006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 7271828 - 7271892
Alignment:
Q  181 aaaattagaaccaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcg 245  Q
    ||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7271828 aaaatcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcg 7271892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 305 - 432
Target Start/End: Complemental strand, 6030391 - 6030268
Alignment:
Q  305 ccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcctgagacccacgaaaaccaaacaaccaccg 404  Q
    |||||||||| || ||| ||| |||||||||| |||||| |||||||||||| ||||||||||||||||    ||  |||  ||||||||||||||||||    
T  6030391 ccatcaccacctatgttccgatcaaacataacatccaccgcaaccaagagag-aaaacgaatcaaatag---tagttccaataaaaccaaacaaccaccg 6030296  T
Q  405 gaaagcatccaacaacacaccacgaaac 432  Q
      ||||||||||| ||||||||||||||    
T  6030295 agaagcatccaacgacacaccacgaaac 6030268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 373
Target Start/End: Original strand, 26656827 - 26656894
Alignment:
Q  305 ccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatag 373  Q
    |||||||||||||  ||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||    
T  26656827 ccatcaccacttatattgcgagcaaacataaccttcacaacaaccaagagag-aaaacgaatcaaatag 26656894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 373
Target Start/End: Original strand, 26928414 - 26928481
Alignment:
Q  305 ccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatag 373  Q
    |||||||||||||  ||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||    
T  26928414 ccatcaccacttatattgcgagcaaacataaccttcacaacaaccaagagag-aaaacgaatcaaatag 26928481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 207 - 262
Target Start/End: Complemental strand, 41355625 - 41355570
Alignment:
Q  207 catgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcat 262  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||  |||||||    
T  41355625 catgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcat 41355570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 38958273 - 38958230
Alignment:
Q  207 catgaagcaccacaaaccaacacaaccaaagatccatcgaaacc 250  Q
    ||||||| | ||||||||||||||||||||||||||||||||||    
T  38958273 catgaagtatcacaaaccaacacaaccaaagatccatcgaaacc 38958230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 252
Target Start/End: Original strand, 26656785 - 26656830
Alignment:
Q  207 catgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 252  Q
    |||||||||||| ||||||| |||||||||||||| ||||||||||    
T  26656785 catgaagcaccataaaccaatacaaccaaagatccgtcgaaaccat 26656830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 252
Target Start/End: Original strand, 26928372 - 26928417
Alignment:
Q  207 catgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 252  Q
    |||||||||||| ||||||| |||||||||||||| ||||||||||    
T  26928372 catgaagcaccataaaccaatacaaccaaagatccgtcgaaaccat 26928417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 176 - 432
Target Start/End: Original strand, 17375266 - 17375521
Alignment:
Q  176 gacctaaaattagaaccaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaa 275  Q
    |||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||  || | | |    
T  17375266 gacctaaaatcagcaccaccatgaaaactgtcatgaagcaccacaaaccaacacaaccaaagattcatcgaaaccataacagttcataagcgaacctaga 17375365  T
Q  276 tatgatccatcaccaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcc 375  Q
    |||||||||||||||||||||||| |||||||||||||| || |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||      
T  17375366 tatgatccatcaccaccatcgtgatcgatccatcaccacctatgttgtgagcaaacataacctccaccacaaccaatagag-aaaacgaatcaaatagtg 17375464  T
Q  376 tgagacccacgaaaaccaaacaaccaccggaaagcatccaacaacacaccacgaaac 432  Q
    ||||| |||||||||||||||||||||||  | ||||||||| ||||||||||||||    
T  17375465 tgagagccacgaaaaccaaacaaccaccgacaggcatccaacgacacaccacgaaac 17375521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 176 - 413
Target Start/End: Complemental strand, 17282078 - 17281841
Alignment:
Q  176 gacctaaaattagaaccaccatgaaaaccgtcatgaagcaccacaaa-ccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaa 274  Q
    |||| ||||| || ||||||| |||||||  ||||||| |||||||| |||||||||||||||||||||||||||||||  |||||||||| ||| | |     
T  17282078 gacccaaaatcagcaccaccaagaaaaccaccatgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcaaacctag 17281979  T
Q  275 atatgatccatcaccaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagc 374  Q
    |||||||||||||||||||| ||||| ||||||||||||| || ||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||     
T  17281978 atatgatccatcaccaccattgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagagag-aaaacaaatcaaatagt 17281880  T
Q  375 ctgagacccacgaaaaccaaacaaccaccggaaagcatc 413  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  17281879 ctgagacctacgaaaaacaaacaaccaccggaaagcatc 17281841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 190 - 427
Target Start/End: Original strand, 1895413 - 1895649
Alignment:
Q  190 accaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcacc 289  Q
    ||||||| |||||||  ||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||  || | | ||||||  |||||||    
T  1895413 accaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgactcatcacc 1895512  T
Q  290 accatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcctgagacccacgaaa 389  Q
    |||||| ||||||||| |||||||| || |||||||||| ||||||||||||||||||||||||||| ||||  |||||||||| ||||||||||| |||    
T  1895513 accatcatgaccgatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagag-aaaagaaatcaaatagtctgagacccacaaaa 1895611  T
Q  390 accaaacaaccaccggaaagcatccaacaacacaccac 427  Q
    |||||||||||||||  ||||||||||| |||||||||    
T  1895612 accaaacaaccaccgacaagcatccaacgacacaccac 1895649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 176 - 417
Target Start/End: Complemental strand, 1551731 - 1551491
Alignment:
Q  176 gacctaaaattagaaccaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaa 275  Q
    |||| ||||| || || |||| |||||||  || |||| ||||||||||||||||||||||||||||||||||| |||  ||||||||||  || | | |    
T  1551731 gacccaaaatcagcactaccaagaaaaccaccacgaagtaccacaaaccaacacaaccaaagatccatcgaaactatataagttcataagcgaacctata 1551632  T
Q  276 tatgatccatcaccaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcc 375  Q
     |||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||| |||||||||||||| |||| ||||| |||||||||| |    
T  1551631 catgatccatcaccaccatcgtgactgatccatcaccacctatgttgcgagcaaacataacatccaccacaaccaatagag-aaaacaaatcaaatagtc 1551533  T
Q  376 tgagacccacgaaaaccaaacaaccaccggaaagcatccaac 417  Q
    ||||||||||||||| |||||||  || || |||||||||||    
T  1551532 tgagacccacgaaaatcaaacaattacaggcaagcatccaac 1551491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 34660280 - 34660351
Alignment:
Q  181 aaaattagaaccaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 252  Q
    ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34660280 aaaatcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 34660351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 305 - 432
Target Start/End: Original strand, 4869707 - 4869830
Alignment:
Q  305 ccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcctgagacccacgaaaaccaaacaaccaccg 404  Q
    |||||||||| || ||||| | ||||| ||||||||||| |||||||||||| ||||||||||||||||    || |||   ||||||||||||||||||    
T  4869707 ccatcaccacctatgttgctatcaaacgtaacctccaccgcaaccaagagag-aaaacgaatcaaatag---tagccccggtaaaaccaaacaaccaccg 4869802  T
Q  405 gaaagcatccaacaacacaccacgaaac 432  Q
      |||||||||||  |||||||||||||    
T  4869803 agaagcatccaacgtcacaccacgaaac 4869830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 292
Target Start/End: Original strand, 3921581 - 3921697
Alignment:
Q  176 gacctaaaattagaaccaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaa 275  Q
    |||| ||||| || ||||||| |||||||  | ||||| |||||||||||||||||||||| ||||||| ||||||||  ||||||||||  ||   | |    
T  3921581 gacccaaaatcagcaccaccaagaaaaccaccgtgaagtaccacaaaccaacacaaccaaacatccatcaaaaccatataagttcataagcgaacttaga 3921680  T
Q  276 tatgatccatcaccacc 292  Q
    |||||||||||||||||    
T  3921681 tatgatccatcaccacc 3921697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 4869634 - 4869710
Alignment:
Q  176 gacctaaaattagaaccaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 252  Q
    |||| ||||| || |||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||    
T  4869634 gacccaaaatcagcaccatcatgaaaaccgccatgaagcaccgcaaaccaaaacaaccaaagatccatcaaaaccat 4869710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 354
Target Start/End: Original strand, 3921684 - 3921736
Alignment:
Q  302 gatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagag 354  Q
    ||||||||||||| || |||||||||||||||||| |||||||||||||||||    
T  3921684 gatccatcaccacctatgttgcgagcaaacataacatccaccacaaccaagag 3921736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 413
Target Start/End: Original strand, 4140576 - 4140622
Alignment:
Q  367 caaatagcctgagacccacgaaaaccaaacaaccaccggaaagcatc 413  Q
    ||||||| ||||||||||||||||||||| ||||||||| |||||||    
T  4140576 caaatagtctgagacccacgaaaaccaaagaaccaccggcaagcatc 4140622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 38531225 - 38531148
Alignment:
Q  284 atcaccaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctcca-ccacaaccaagagagaaaa 360  Q
    ||||||||  |||| |||||||||||||||| || ||||||| |||||| |||||||| |||| ||||||| ||||||    
T  38531225 atcaccactttcgtaaccgatccatcaccacatatgttgcgaacaaacaaaacctccatccaccaccaagaaagaaaa 38531148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 432
Target Start/End: Original strand, 34660352 - 34660440
Alignment:
Q  340 caccacaaccaagagagaaaaacgaatcaaatagcctgagacccacgaaaaccaaacaaccaccggaaagcatccaacaacacaccacgaaac 432  Q
    ||||||||| ||||||||||| ||||||||||||    || || |  ||||||||||||||||||  ||||||||||| ||||| ||||||||    
T  34660352 caccacaactaagagagaaaa-cgaatcaaatagt---agccctaataaaaccaaacaaccaccgacaagcatccaacgacacatcacgaaac 34660440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 38531286 - 38531237
Alignment:
Q  214 caccacaaaccaacacaaccaaagatccatcgaaaccataatagttcata 263  Q
    ||||||||||||||||||| ||| ||||||| ||||||||| || |||||    
T  38531286 caccacaaaccaacacaacaaaaaatccatcaaaaccataacagatcata 38531237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 176 - 427
Target Start/End: Original strand, 21881456 - 21881706
Alignment:
Q  176 gacctaaaattagaaccaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaa 275  Q
    |||| ||||| || |||||||||| ||| | |||||||||||||||||||||| |||||||||| |||||||||||||  ||||||||||  || | | |    
T  21881456 gacccaaaatcagcaccaccatgataactgccatgaagcaccacaaaccaacataaccaaagattcatcgaaaccatagcagttcataagcgaacctaga 21881555  T
Q  276 tatgatccatcaccaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcc 375  Q
    ||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |    
T  21881556 tatgatccatcaccaccatcgtgaccgatccatcaccacctttgttgcgagcaaacataacctccgccacagccaagagag-aaaacgaatcaaatagtc 21881654  T
Q  376 tgagacccacgaaaaccaaacaaccaccggaaagcatccaacaacacaccac 427  Q
    ||||| |||||||||||||||||| ||||  ||||||||||| |||||||||    
T  21881655 tgagagccacgaaaaccaaacaacgaccgacaagcatccaacgacacaccac 21881706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 176 - 398
Target Start/End: Original strand, 20740567 - 20740788
Alignment:
Q  176 gacctaaaattagaaccaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaa 275  Q
    |||| ||||| || ||||||| |||||||  ||||||| |||| ||||||||||||||||||||||||||||||||||  |||||||||   || | | |    
T  20740567 gacccaaaatcagcaccaccaagaaaaccaccatgaagtaccataaaccaacacaaccaaagatccatcgaaaccatataagttcataaccgaacctaga 20740666  T
Q  276 tatgatccatcaccaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcc 375  Q
    |||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||      
T  20740667 tatgatccatcaccaccatcgtgaccaatccatcaccacctatgttgcgagcaaacataacatccaccacaaccaagagag-aaaacaaatcaaatagtt 20740765  T
Q  376 tgagacccacgaaaaccaaacaa 398  Q
    |||||||||||||||||||||||    
T  20740766 tgagacccacgaaaaccaaacaa 20740788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 30845560 - 30845633
Alignment:
Q  190 accaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcata 263  Q
    ||||||||| |||||  || ||||||||| ||||||||||||||||| || |||| ||||||||| || |||||    
T  30845560 accaccatggaaaccaccacgaagcaccataaaccaacacaaccaaaaattcatcaaaaccataacagatcata 30845633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 190 - 432
Target Start/End: Original strand, 53202269 - 53202510
Alignment:
Q  190 accaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcacc 289  Q
    ||||||| ||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||  ||||||||||  || | | ||||||| |||||||    
T  53202269 accaccaagaaaaccatcatgaagtaccacaaaccaatacaaccaaagatccatcgaaaccatataagttcataagcgaatctagatatgattcatcacc 53202368  T
Q  290 accatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcctgagacccacgaaa 389  Q
    ||||||||||||||||  ||||||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||  ||||||||||||||    
T  53202369 accatcgtgaccgatctgtcaccacctatgttgcgagcaaacataacctccaccacaaccaagagag-aaaacaaatcaaatagtttgagacccacgaaa 53202467  T
Q  390 accaaacaaccaccggaaagcatccaacaacacaccacgaaac 432  Q
    ||||||||||||| |  ||||||||||| ||||||||| ||||    
T  53202468 accaaacaaccacagacaagcatccaacgacacaccacaaaac 53202510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 176 - 432
Target Start/End: Complemental strand, 23054366 - 23054112
Alignment:
Q  176 gacctaaaattagaaccaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaa 275  Q
    |||| ||||| || |||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||  || | | |    
T  23054366 gacccaaaatcagcaccaccatgaaaaccgccataaagcaccacgaaccaacacaaccaaagatccattgaaaccataacagttcataagcgaaccgaga 23054267  T
Q  276 tatgatccatcaccaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcc 375  Q
    ||||||||| ||| ||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |    
T  23054266 tatgatccagcac-accatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagag-aaaacaaatcaaatagtc 23054169  T
Q  376 tgagacccacgaaaaccaaacaaccaccggaaagcatccaacaacacaccacgaaac 432  Q
    | ||||||||||||||||||||||||| |  ||||||||| |||||| |||| ||||    
T  23054168 tcagacccacgaaaaccaaacaaccactgacaagcatccagcaacacgccacaaaac 23054112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 192 - 427
Target Start/End: Complemental strand, 47518568 - 47518334
Alignment:
Q  192 caccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccac 291  Q
    ||||| |||||||  ||||||| ||||||||| |||||||||||||||||||||||||||||  ||||||||||  || | | ||||||| |||||||||    
T  47518568 caccaagaaaaccaccatgaagtaccacaaacgaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgattcatcaccac 47518469  T
Q  292 catcgtgaccgatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcctgagacccacgaaaac 391  Q
    ||| ||||| ||||||||||||| || ||||||||||||||||||||||||||||||  |||||| ||||| |||||||||| |||||||||| ||||||    
T  47518468 cattgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaacatagagag-aaaacaaatcaaatagtctgagacccatgaaaac 47518370  T
Q  392 caaacaaccaccggaaagcatccaacaacacaccac 427  Q
    |||||||||||||  ||||||||||| |||||||||    
T  47518369 caaacaaccaccgacaagcatccaacgacacaccac 47518334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 207 - 359
Target Start/End: Original strand, 6410011 - 6410164
Alignment:
Q  207 catgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccaccatcgtgaccgatcc 306  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||  ||  || || ||||| ||| ||||| |||||||||||||    
T  6410011 catgaagcaccacaaaccaacacaacccaagattcatcgaaaccataatagatcataagcgaactcagatctgatcgatcgccaccttcgtgaccgatcc 6410110  T
Q  307 atcaccacttacgttgcgagcaaacataacctcca-ccacaaccaagagagaaa 359  Q
    |||||||| ||  |||||||||||||||||||||| |||| |||||||||||||    
T  6410111 atcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaa 6410164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 265
Target Start/End: Complemental strand, 34227151 - 34227062
Alignment:
Q  176 gacctaaaattagaaccaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcataag 265  Q
    |||| ||||| || ||||||| |||| ||  ||||||| |||||| |||||||||||||||||||||| |||||||||  ||||||||||    
T  34227151 gacccaaaatcagcaccaccaagaaagccaccatgaagtaccacagaccaacacaaccaaagatccattgaaaccatataagttcataag 34227062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 12485413 - 12485357
Alignment:
Q  283 catcaccaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctc 339  Q
    |||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||    
T  12485413 catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc 12485357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 343
Target Start/End: Complemental strand, 24957635 - 24957572
Alignment:
Q  280 atccatcaccaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctccacc 343  Q
    |||||||  |||| ||||||||||| ||||||||| || |||||||||||||||||||||||||    
T  24957635 atccatcgtcaccttcgtgaccgatacatcaccacctatgttgcgagcaaacataacctccacc 24957572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 12469401 - 12469342
Alignment:
Q  190 accaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaac 249  Q
    |||||||||  ||||  ||||||| ||||||||||||||||||||| |||||||||||||    
T  12469401 accaccatggtaaccaccatgaaggaccacaaaccaacacaaccaaggatccatcgaaac 12469342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 338
Target Start/End: Original strand, 55728934 - 55728977
Alignment:
Q  295 cgtgaccgatccatcaccacttacgttgcgagcaaacataacct 338  Q
    ||||||||||| |||||||| ||||||||||||||||| |||||    
T  55728934 cgtgaccgatctatcaccacctacgttgcgagcaaacaaaacct 55728977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 12466740 - 12466698
Alignment:
Q  207 catgaagcaccacaaaccaacacaaccaaagatccatcgaaac 249  Q
    ||||||| |||||||||||||| |||||| |||||||||||||    
T  12466740 catgaaggaccacaaaccaacataaccaaggatccatcgaaac 12466698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 12469289 - 12469233
Alignment:
Q  283 catcaccaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctc 339  Q
    |||||||||||||||||||  |||||||| ||  |||||||||| ||||| ||||||    
T  12469289 catcaccaccatcgtgaccagtccatcacaacccacgttgcgagaaaacaaaacctc 12469233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 136; Significance: 9e-71; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 181 - 432
Target Start/End: Original strand, 10408819 - 10409069
Alignment:
Q  181 aaaattagaaccaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatga 280  Q
    |||||||| |||||||| ||||||  ||||||||||||||||||||||||||||||||| |||||||||||||| |  |||||||  || | | ||||||    
T  10408819 aaaattagcaccaccattaaaacctccatgaagcaccacaaaccaacacaaccaaagattcatcgaaaccataacatatcataagcgaacctagatatga 10408918  T
Q  281 tccatcaccaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcctgaga 380  Q
    |||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||  ||||||||||  |||||    
T  10408919 tccatcaccaccatcgtgaccgttccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagagaaa-aaatcaaatagtttgaga 10409017  T
Q  381 cccacgaaaaccaaacaaccaccggaaagcatccaacaacacaccacgaaac 432  Q
    ||||| ||||||||| |||||||   ||||||||||| ||||||||| ||||    
T  10409018 cccacaaaaaccaaataaccaccaacaagcatccaacgacacaccacaaaac 10409069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 192 - 428
Target Start/End: Original strand, 5994635 - 5994870
Alignment:
Q  192 caccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccac 291  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||  || ||| |||||||||||||||||    
T  5994635 caccatgaataccgccatgaagcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcataagcgaacccagatatgatccatcaccac 5994734  T
Q  292 catcgtgaccgatccatcaccacttacgttgcgagcaaacataacctcca-ccacaaccaagagagaaaaacgaatcaaatagcctgagacccacgaaaa 390  Q
    |||| ||| |||||||| | ||| || |||||||||||||||||| |||| ||||||||||||||| ||||| ||||||| ||  |||| ||||||||||    
T  5994735 catcatgatcgatccattagcac-tatgttgcgagcaaacataacatccatccacaaccaagagag-aaaacaaatcaaacagtttgaggcccacgaaaa 5994832  T
Q  391 ccaaacaaccaccggaaagcatccaacaacacaccacg 428  Q
    |||||||| |||||| || |||||||||||||||||||    
T  5994833 ccaaacaatcaccggcaaccatccaacaacacaccacg 5994870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 191 - 359
Target Start/End: Original strand, 6444039 - 6444208
Alignment:
Q  191 ccaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcacca 290  Q
    ||||||||||||||  || |||| ||||||||||||||||| ||||||| | |||||||||||| || ||||| |  ||  || || |||||||||||||    
T  6444039 ccaccatgaaaaccaccacgaagtaccacaaaccaacacaatcaaagattcttcgaaaccataacagctcataggcgaactcatatctgatccatcacca 6444138  T
Q  291 ccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctcca-ccacaaccaagagagaaa 359  Q
    || | |||||| |||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||    
T  6444139 cctttgtgaccaatccataaccacctaagttgcgagcaaacataacctccatccacaaccaagagagaaa 6444208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 190 - 432
Target Start/End: Original strand, 3302578 - 3302819
Alignment:
Q  190 accaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcacc 289  Q
    |||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| |||| |||| |||||  || | | |||||||  ||||||    
T  3302578 accaccatgaaaactgtcatgaagcaccacataccaatacaaccaaagatccatcgaaactataacagttaataagcgaatctagatatgatgtatcacc 3302677  T
Q  290 accatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcctgagacccacgaaa 389  Q
    |||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||  ||| ||||||||||| |||||| ||||||||    
T  3302678 accatcgtgatcgatctatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagag-gaaatgaatcaaatagtctgagatccacgaaa 3302776  T
Q  390 accaaacaaccaccggaaagcatccaacaacacaccacgaaac 432  Q
    ||||||||||||||   ||||||||||  ||||||||||||||    
T  3302777 accaaacaaccaccactaagcatccaatgacacaccacgaaac 3302819  T

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Target: chr1 (Bit Score: 126; Significance: 8e-65; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 190 - 432
Target Start/End: Original strand, 34117975 - 34118218
Alignment:
Q  190 accaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcacc 289  Q
    |||||||||||||  | ||||| |||||||||| |||||||||||||||||||  |||||||||| ||||||||||  || | | |||||||||||||||    
T  34117975 accaccatgaaaaatgccatgaggcaccacaaatcaacacaaccaaagatccactgaaaccataacagttcataagcgaacctagatatgatccatcacc 34118074  T
Q  290 accatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctccac--cacaaccaagagagaaaaacgaatcaaatagcctgagacccacga 387  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||| ||  ||||||||| |||| ||||| |||||||||  |||||| ||||||    
T  34118075 accatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctctaccacacaaccaatagag-aaaacaaatcaaataatctgagatccacga 34118173  T
Q  388 aaaccaaacaaccaccggaaagcatccaacaacacaccacgaaac 432  Q
    |||| ||||||||||||| ||||||||||| |||||||| |||||    
T  34118174 aaactaaacaaccaccggcaagcatccaacgacacaccatgaaac 34118218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 302 - 432
Target Start/End: Original strand, 34655070 - 34655199
Alignment:
Q  302 gatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcctgagacccacgaaaaccaaacaacca 401  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||| | |||||||||| |||||||||||||||||||||||| ||    
T  34655070 gatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaaaagagaaaa-caaatcaaatagtctgagacccacgaaaaccaaacaaaca 34655168  T
Q  402 ccggaaagcatccaacaacacaccacgaaac 432  Q
    |||||||||||||||| ||||||||||||||    
T  34655169 ccggaaagcatccaacgacacaccacgaaac 34655199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 207 - 360
Target Start/End: Complemental strand, 11408087 - 11407933
Alignment:
Q  207 catgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccaccatcgtgaccgatcc 306  Q
    |||||||||||||||||||||||||||||||||   |||||||||||| |  |||||||  || ||| || ||||||||||||||| ||||| |||||||    
T  11408087 catgaagcaccacaaaccaacacaaccaaagatttgtcgaaaccataacatatcataagctaacccatatctgatccatcaccaccttcgtggccgatcc 11407988  T
Q  307 atcaccacttacgttgcgagcaaacataacctcca-ccacaaccaagagagaaaa 360  Q
    ||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||    
T  11407987 atcaccacttatgttgcgagcaaacataacctccacccaccaccaagagagaaaa 11407933  T

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Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 301 - 427
Target Start/End: Complemental strand, 39709029 - 39708905
Alignment:
Q  301 cgatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcctgagacccacgaaaaccaaacaacc 400  Q
    |||||||||||||| ||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||   |||||||| |||||||||||||||    
T  39709029 cgatccatcaccacctatattgcgagcaaacataacctccaccacaaccaagagag-aaaacgaatcaaatagttcgagaccca-gaaaaccaaacaacc 39708932  T
Q  401 accggaaagcatccaacaacacaccac 427  Q
    ||||  ||||||| |||||||||||||    
T  39708931 accgacaagcatctaacaacacaccac 39708905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 181 - 292
Target Start/End: Original strand, 34654972 - 34655083
Alignment:
Q  181 aaaattagaaccaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatga 280  Q
    ||||| || |||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||| | ||||||||  || | | ||||||    
T  34654972 aaaatcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaatcaaagatgcatcaaaaccataacatttcataagcgaacctagatatga 34655071  T
Q  281 tccatcaccacc 292  Q
    ||||||||||||    
T  34655072 tccatcaccacc 34655083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 305 - 432
Target Start/End: Original strand, 615823 - 615946
Alignment:
Q  305 ccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcctgagacccacgaaaaccaaacaaccaccg 404  Q
    |||||||||| || ||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||    ||  |||  ||||||||||||||||||    
T  615823 ccatcaccacctatgttgcgatcaaacataatctccaccacaaccaagagag-aaaacgaatcaaatag---tagctccaataaaaccaaacaaccaccg 615918  T
Q  405 gaaagcatccaacaacacaccacgaaac 432  Q
      ||||||||||| ||||||||||||||    
T  615919 agaagcatccaacgacacaccacgaaac 615946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 181 - 290
Target Start/End: Complemental strand, 26236780 - 26236671
Alignment:
Q  181 aaaattagaaccaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatga 280  Q
    ||||| || |||| ||||||||||  ||||||||||||||||||||| ||||||||||||||||||| |||||| || |||||||| || ||| || |||    
T  26236780 aaaatcagcaccatcatgaaaaccaccatgaagcaccacaaaccaacgcaaccaaagatccatcgaacccataacaggtcataagtgaacccagatctga 26236681  T
Q  281 tccatcacca 290  Q
    ||||||||||    
T  26236680 tccatcacca 26236671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 615764 - 615826
Alignment:
Q  190 accaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 252  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  615764 accaccatgaaaaccgtcatgaagcaccacaaactaacacaaccaaagatccatcaaaaccat 615826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 207 - 292
Target Start/End: Complemental strand, 39709100 - 39709015
Alignment:
Q  207 catgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccacc 292  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||  || ||| ||| ||||||||||||||    
T  39709100 catgaagcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcctaagcgaacccagatacgatccatcaccacc 39709015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 14351062 - 14350994
Alignment:
Q  195 catgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcata 263  Q
    ||||||||||  || ||| ||||||||||||||||||| ||| || |||| |||||||||||| |||||    
T  14351062 catgaaaaccaccacgaaccaccacaaaccaacacaacaaaaaattcatcaaaaccataatagatcata 14350994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 11814816 - 11814889
Alignment:
Q  190 accaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagttcata 263  Q
    ||||||||| |||||  || |||||||||||||| ||||||||||||  | |||| ||||||||| || |||||    
T  11814816 accaccatggaaaccaccacgaagcaccacaaacaaacacaaccaaaatttcatcaaaaccataacagatcata 11814889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 32058699 - 32058743
Alignment:
Q  210 gaagcaccacaaaccaacacaaccaaagatccatcgaaaccataa 254  Q
    ||||||||| ||||||||||| ||||| ||||||| |||||||||    
T  32058699 gaagcaccataaaccaacacagccaaaaatccatctaaaccataa 32058743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 252
Target Start/End: Complemental strand, 18269825 - 18269763
Alignment:
Q  190 accaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 252  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  18269825 accaccatgaaaaccaccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 18269763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 176 - 259
Target Start/End: Original strand, 43275968 - 43276051
Alignment:
Q  176 gacctaaaattagaaccaccatgaaaaccgtcatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataatagtt 259  Q
    |||| ||||| || |||||||| ||||  ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||    
T  43275968 gacccaaaatcagcaccaccataaaaattgtcatgaagcaccacaaaccaacacaaccaaagattcatcgaaatcataacagtt 43276051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 35064 - 35120
Alignment:
Q  283 catcaccaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctc 339  Q
    |||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||    
T  35064 catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc 35120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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