View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8892_low_7 (Length: 358)

Name: NF8892_low_7
Description: NF8892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8892_low_7
NF8892_low_7
[»] chr8 (2 HSPs)
chr8 (16-167)||(1085984-1086135)
chr8 (231-335)||(1086199-1086303)
[»] chr3 (3 HSPs)
chr3 (17-167)||(24996718-24996867)
chr3 (51-167)||(11428130-11428245)
chr3 (232-330)||(11427967-11428065)
[»] scaffold1135 (2 HSPs)
scaffold1135 (17-167)||(2500-2650)
scaffold1135 (245-308)||(2286-2349)
[»] scaffold0054 (2 HSPs)
scaffold0054 (17-167)||(2350-2500)
scaffold0054 (245-308)||(2136-2199)
[»] chr6 (3 HSPs)
chr6 (17-167)||(22893142-22893292)
chr6 (231-308)||(26531543-26531620)
chr6 (245-308)||(22892928-22892991)
[»] chr2 (2 HSPs)
chr2 (17-167)||(194260-194410)
chr2 (269-308)||(194048-194087)
[»] chr7 (1 HSPs)
chr7 (17-77)||(19534148-19534208)


Alignment Details
Target: chr8 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 1085984 - 1086135
Alignment:
Q  16 gacatcaaatttaacccacgattaacttcacatcttcaatattttagctaaattgcatatatagttctnnnnnnntcaatttattccatatcagtattct 115  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  1085984 gacatcaaatttaacccaccattaacttcacatcttcaatattttagctaaattgcatatatagttctaaaaaaatcaatttattccatatcagtattct 1086083  T
Q  116 gaattaaccaaattgtgatttacaattttcacaaaaaggtttaaatttaatt 167  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1086084 aaattaaccaaattgtgatttacaattttcacaaaaaggtttaaatttaatt 1086135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 231 - 335
Target Start/End: Original strand, 1086199 - 1086303
Alignment:
Q  231 cacaagatggaaagagtgaattgaacaacaagaacatggatgaatatacctgcgttgaagatgaaagagggagaaaacgagagaacaagctagggattcc 330  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1086199 cacaaaatggaaagagtgaattgaacaacaagaacatggatgaatatacctgcgttgaagattaaagagggagaaaacgagagaacaagctagggattcc 1086298  T
Q  331 aatcg 335  Q
    |||||    
T  1086299 aatcg 1086303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 9e-55; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 24996867 - 24996718
Alignment:
Q  17 acatcaaatttaacccacgattaacttcacatcttcaatattttagctaaattgcatatatagttctnnnnnnntcaatttattccatatcagtattctg 116  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||       ||||||||||||||||||||||||||    
T  24996867 acatcaaatttcacccaccattaacttcacatcttcaatattttagctaaattacatatatagttctaaaaaa-tcaatttattccatatcagtattctg 24996769  T
Q  117 aattaaccaaattgtgatttacaattttcacaaaaaggtttaaatttaatt 167  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24996768 aattaaccaaattgtgatttacaattttcacaaaaaggattaaatttaatt 24996718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 51 - 167
Target Start/End: Complemental strand, 11428245 - 11428130
Alignment:
Q  51 tcaatattttagctaaattgcatatatagttctnnnnnnntcaatttattccatatcagtattctgaattaaccaaattgtgatttacaattttcacaaa 150  Q
    |||||||||||||||||||||||||||||||||       | | ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  11428245 tcaatattttagctaaattgcatatatagttctaaaaaa-taagtttattccatatcagtattatgaattaaccaaattgagatttacaattttcacaaa 11428147  T
Q  151 aaggtttaaatttaatt 167  Q
    || ||||||||||||||    
T  11428146 aatgtttaaatttaatt 11428130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 11428065 - 11427967
Alignment:
Q  232 acaagatggaaagagtgaattgaacaacaagaacatggatgaatatacctgcgttgaagatgaaagagggagaaaacgaga-gaacaagctagggattcc 330  Q
    ||||||||||| |||||||| |||||| |||||||||||||||||||| ||| ||||||||| |||||||||||||||||| ||||||||||||||||||    
T  11428065 acaagatggaacgagtgaatcgaacaaaaagaacatggatgaatatacatgcattgaagatg-aagagggagaaaacgagaggaacaagctagggattcc 11427967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1135 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold1135
Description:

Target: scaffold1135; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 2650 - 2500
Alignment:
Q  17 acatcaaatttaacccacgattaacttcacatcttcaatattttagctaaattgcatatatagttctnnnnnnntcaatt--tattccatatcagtattc 114  Q
    ||||||||||  ||||| |||||||| |||||||||||||| ||||||||| ||||||||| ||||        ||| ||  ||| |||| | |||| ||    
T  2650 acatcaaattccacccatgattaactacacatcttcaatatcttagctaaagtgcatatatggttc-aaaaaaatcactttatatcccatcttagtactc 2552  T
Q  115 tgaattaaccaaattgtgatttacaattttcacaaaaaggtttaaatttaatt 167  Q
    || ||||||||||||| || |||||||||||||||||| ||||||||||||||    
T  2551 tggattaaccaaattgaga-ttacaattttcacaaaaatgtttaaatttaatt 2500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1135; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 2349 - 2286
Alignment:
Q  245 agtgaattgaacaacaagaacatggatgaatatacctgcgttgaagatgaaagagggagaaaac 308  Q
    ||||||| |||||| |||| ||  |||||||||||||  |||||||||| ||||||||||||||    
T  2349 agtgaatcgaacaaaaagaccagagatgaatataccttagttgaagatggaagagggagaaaac 2286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 2500 - 2350
Alignment:
Q  17 acatcaaatttaacccacgattaacttcacatcttcaatattttagctaaattgcatatatagttctnnnnnnntcaatt--tattccatatcagtattc 114  Q
    ||||||||||  ||||| |||||||| |||||||||||||| ||||||||| ||||||||| ||||        ||| ||  ||| |||| | |||| ||    
T  2500 acatcaaattccacccatgattaactacacatcttcaatatcttagctaaagtgcatatatggttc-aaaaaaatcactttatatcccatcttagtactc 2402  T
Q  115 tgaattaaccaaattgtgatttacaattttcacaaaaaggtttaaatttaatt 167  Q
    || ||||||||||||| || |||||||||||||||||| ||||||||||||||    
T  2401 tggattaaccaaattgaga-ttacaattttcacaaaaatgtttaaatttaatt 2350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 2199 - 2136
Alignment:
Q  245 agtgaattgaacaacaagaacatggatgaatatacctgcgttgaagatgaaagagggagaaaac 308  Q
    ||||||| |||||| |||| ||  |||||||||||||  |||||||||| ||||||||||||||    
T  2199 agtgaatcgaacaaaaagaccagagatgaatataccttagttgaagatggaagagggagaaaac 2136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 22893292 - 22893142
Alignment:
Q  17 acatcaaatttaacccacgattaacttcacatcttcaatattttagctaaattgcatatatagttctnnnnnnntcaatt--tattccatatcagtattc 114  Q
    ||||||||||  ||||| |||||||| |||||||||||||| ||||||||| ||||||||| ||||        ||| ||  ||| |||| | |||| ||    
T  22893292 acatcaaattccacccatgattaactacacatcttcaatatcttagctaaagtgcatatatggttc-aaaaaaatcactttatatcccatcttagtactc 22893194  T
Q  115 tgaattaaccaaattgtgatttacaattttcacaaaaaggtttaaatttaatt 167  Q
    || ||||||||||||| || |||||||||||||||||| ||||||||||||||    
T  22893193 tggattaaccaaattgaga-ttacaattttcacaaaaatgtttaaatttaatt 22893142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 308
Target Start/End: Original strand, 26531543 - 26531620
Alignment:
Q  231 cacaagatggaaagagtgaattgaacaacaagaacatggatgaatatacctgcgttgaagatgaaagagggagaaaac 308  Q
    ||||||||||||  |||||||||||||| | || ||  |||| ||||||||| |||||||||| ||||||||||||||    
T  26531543 cacaagatggaacaagtgaattgaacaaaatgaccagcgatgcatatacctgagttgaagatggaagagggagaaaac 26531620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 22892991 - 22892928
Alignment:
Q  245 agtgaattgaacaacaagaacatggatgaatatacctgcgttgaagatgaaagagggagaaaac 308  Q
    ||||||| |||||| |||| ||  |||||||||||||| |||||||||| |||||| |||||||    
T  22892991 agtgaatcgaacaaaaagaccagagatgaatatacctgagttgaagatggaagaggaagaaaac 22892928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 194410 - 194260
Alignment:
Q  17 acatcaaatttaacccacgattaacttcacatcttcaatattttagctaaattgcatatatagttctnnnnnnntcaatt--tattccatatcagtattc 114  Q
    ||||||||||  |||||| ||||||| |||||||||||||| ||||||||| ||||||||| ||||        ||| ||  |||||||||| |||| |     
T  194410 acatcaaattccacccacaattaactacacatcttcaatatcttagctaaagtgcatatatggttc-aaaaaaatcactttatattccatattagtactg 194312  T
Q  115 tgaattaaccaaattgtgatttacaattttcacaaaaaggtttaaatttaatt 167  Q
    || ||||||||||||| || ||| |||||||||||||| ||||||||||||||    
T  194311 tggattaaccaaattgaga-ttaaaattttcacaaaaatgtttaaatttaatt 194260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 194087 - 194048
Alignment:
Q  269 gatgaatatacctgcgttgaagatgaaagagggagaaaac 308  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  194087 gatgaatatacctgagttgaagatggaagagggagaaaac 194048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 19534208 - 19534148
Alignment:
Q  17 acatcaaatttaacccacgattaacttcacatcttcaatattttagctaaattgcatatat 77  Q
    ||||||||||  |||||| |||||||||||||||||||||| ||||| ||| |||||||||    
T  19534208 acatcaaattccacccacaattaacttcacatcttcaatatcttagccaaagtgcatatat 19534148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University