View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8893_high_15 (Length: 320)
Name: NF8893_high_15
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8893_high_15 |
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| [»] scaffold0125 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 35 - 308
Target Start/End: Original strand, 21843617 - 21843890
Alignment:
| Q |
35 |
agaaattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtcttcattga |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21843617 |
agaaattcccttttgattcttgtttttgggtattctttgaagatatctatttagatctagattatgtttttgttgttttgattatttgggtcttcattga |
21843716 |
T |
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| Q |
135 |
gtttatgtagtgacnnnnnnngttgatttctgata-ggnnnnnnngtttctaataatgggtatttgnnnnnnnnnttaacctttttatgttgctaaatcc |
233 |
Q |
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|||||||||||||| |||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21843717 |
gtttatgtagtgactttttttgttgatttctgatagggtttttttgtttctaataatgggtatttg-aaaaaaaattaacctttttatgttgctaaatcc |
21843815 |
T |
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| Q |
234 |
ttggttgatttttattgttgtgctgttctgctatctgcatttagccggttctttttgtctggctctatgatgtcc |
308 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21843816 |
ttggttgatttttattgttatgctgttctgctatctgcatttagccggttctttttgtctggctctatgatgtcc |
21843890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 35 - 309
Target Start/End: Complemental strand, 20235 - 19961
Alignment:
| Q |
35 |
agaaattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtcttcattga |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20235 |
agaaattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtcttcattga |
20136 |
T |
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| Q |
135 |
gtttatgtagtgacnnnnnnngttgatttctgata-ggnnnnnnngtttctaataatgggtatttgnnnnnnnnnttaacctttttatgttgctaaatcc |
233 |
Q |
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| T |
20135 |
gtttatgtagtgactttttttgttgatttttgatagggtttttttgtttctaataatgggtatttg-aaaaaaaattaaccttgttatgttgctaaatcc |
20037 |
T |
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| Q |
234 |
ttggttgatttttattgttgtgctgttctgctatctgcatttagccggttctttttgtctggctctatgatgtcca |
309 |
Q |
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| T |
20036 |
ttggttgatttttattgttgtgctgttctgctatctgcatttagctggttctttttgtctggctctatgatgtcca |
19961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 38 - 148
Target Start/End: Original strand, 10660080 - 10660190
Alignment:
| Q |
38 |
aattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtcttcattgagtt |
137 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10660080 |
aattcccttttgatttttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtctacattgagtt |
10660179 |
T |
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| Q |
138 |
tatgtagtgac |
148 |
Q |
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|||||| |||| |
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| T |
10660180 |
tatgtactgac |
10660190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 38 - 148
Target Start/End: Original strand, 10874225 - 10874335
Alignment:
| Q |
38 |
aattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtcttcattgagtt |
137 |
Q |
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| T |
10874225 |
aattcccttttgatttttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtctacattgagtt |
10874324 |
T |
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| Q |
138 |
tatgtagtgac |
148 |
Q |
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|||||| |||| |
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| T |
10874325 |
tatgtactgac |
10874335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 209 - 296
Target Start/End: Original strand, 10660573 - 10660660
Alignment:
| Q |
209 |
ttaacctttttatgttgctaaatccttggttgatttttattgttgtgctgttctgctatctgcatttagccggttctttttgtctggc |
296 |
Q |
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||||||||||||||||| |||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
10660573 |
ttaacctttttatgttgttaaatccttggttggtttttattgttgtgctattatgctatctgcatttagccggttctttttgtctggc |
10660660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 209 - 296
Target Start/End: Original strand, 10874718 - 10874805
Alignment:
| Q |
209 |
ttaacctttttatgttgctaaatccttggttgatttttattgttgtgctgttctgctatctgcatttagccggttctttttgtctggc |
296 |
Q |
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| T |
10874718 |
ttaacctttttatgttgttaaatccttggttggtttttattgttgtgctattatgctatctgcatttagccggttctttttgtctggc |
10874805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 12818615 - 12818505
Alignment:
| Q |
38 |
aattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgtt--gttttgattatttgggtcttcattgag |
135 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| || ||| ||||||| |||||| || ||||||||| ||||||||||||||||| |
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| T |
12818615 |
aattcccttttgattcttttttttgggtattctttgaagataact--ttaaacatagattacgttttttttttgttttgattgtttgggtcttcattgag |
12818518 |
T |
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| Q |
136 |
tttatgtagtgac |
148 |
Q |
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||||||||||||| |
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| T |
12818517 |
tttatgtagtgac |
12818505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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