View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8893_high_20 (Length: 296)
Name: NF8893_high_20
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8893_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 12 - 278
Target Start/End: Original strand, 7299429 - 7299701
Alignment:
| Q |
12 |
agcagagacaggataaaagggaacttcagcttcattagcaatagcataagcaagcatagtttttccacaaccagatggcccatgtaacaaaattcctctt |
111 |
Q |
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| T |
7299429 |
agcagagacaggataaaagggaacttcagcttcattagcaatagcataagcaagcatagtttttccacaaccagatggcccatgtaacaaaattcctctt |
7299528 |
T |
|
| Q |
112 |
ttaggtttcattccatactctttaatcaattcaggttgacgcagtaacttaacacttctcttcaattcctttattatcttcttcatttcatttcccacta |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7299529 |
ttaggtttcattccatactctttaatcaattcaggttgacgcagtaacttaacacttctcttcaattcctttattatcttcttcatttcatttccaacta |
7299628 |
T |
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| Q |
212 |
aatccttaaacatagtcacctctt------catcagcataagattcagtttcttcttcggattcaggttcagg |
278 |
Q |
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| T |
7299629 |
aatccttaaacatagtcacctcttcatcagcatcagcatcagattcagtttcttcttcggattcaggttcagg |
7299701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 7309191 - 7309286
Alignment:
| Q |
12 |
agcagagacaggataaaagggaacttcagcttcattagcaatagcataagcaagcatagtttttccacaaccagatggcccatgtaacaaaattcc |
107 |
Q |
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| T |
7309191 |
agcagaaataggataaaaaggaagttcagtttcattagcaatagcatgagcaagtctagttttcccacaaccaggtggtccgtgcagcaaaattcc |
7309286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 36250251 - 36250317
Alignment:
| Q |
116 |
gtttcattccatactctttaatcaattcaggttgacgcagtaacttaacacttctcttcaattcctt |
182 |
Q |
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| T |
36250251 |
gtttcattccatactctataatcaattcaggttgacatagtaatttcacacttctctttgattcctt |
36250317 |
T |
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