View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8893_high_22 (Length: 284)
Name: NF8893_high_22
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8893_high_22 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 15 - 284
Target Start/End: Complemental strand, 48680550 - 48680281
Alignment:
| Q |
15 |
acatcaaagattctagagagaaacataaattattcaatgcaattgaaaatcttccttgtgttgcaaggaaggctgaatgggcattgagttggattaacag |
114 |
Q |
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| T |
48680550 |
acatcaaagattctagagagaaacataaattattcaatgcaattgaaaatcttccttgtgttgcaaggaaggctgaatgggcattgagttggattaacag |
48680451 |
T |
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| Q |
115 |
gtgacagttaatcttaaccgcactgtgaataaactgccaagtaggcccgttagaatttgtattagtaaaagtatggccctatcttgtaccaaaaattgat |
214 |
Q |
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| T |
48680450 |
gtgacagttaatcttaaccgcactgtgaataaactgccaagtaggcccgttagaatttgtattagtaaaagtatggccctatcttgtaccaaaaattgat |
48680351 |
T |
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| Q |
215 |
tggtttgatgggccagcctgccgggccaaaatacactggcaacaccagaaaagcagaaatgataaattct |
284 |
Q |
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| T |
48680350 |
tggtttgatgggccagcctgccgggccaaaatacactggcaacaccagaaaagcagaaatgataaattct |
48680281 |
T |
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