View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8893_high_4 (Length: 492)
Name: NF8893_high_4
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8893_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 7 - 491
Target Start/End: Original strand, 50614349 - 50614833
Alignment:
| Q |
7 |
catcaccaatattttgatattcattaacattatcaacttcactcaaaatttccattaaccttatgtaatggggaaaacctgaattttctgcttcattgtc |
106 |
Q |
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| T |
50614349 |
catcaccaatattttgatattcattaacattatgaacttcactcagaatttccattaaccttatgtaatgggaaaaacctgaattttctgcttcattgtc |
50614448 |
T |
|
| Q |
107 |
atgtttcctcactggcaaagactgcatacggacgtcatcgtccactccatgacttgtaacgataacgtttattttatcaattaacggcactaatcaattt |
206 |
Q |
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| T |
50614449 |
atgtttcctcactggcaaagactgcatacggacgtcatcgtccactccatgacttgtaacgataacgttgattttatcaattaacggcactaatcaattt |
50614548 |
T |
|
| Q |
207 |
gatataactctctttttggtgatagaacccctcnnnnnnngtattctttaatctccttggcgcaatcgtcacaactaataccaaattttcaagtgaaaaa |
306 |
Q |
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| T |
50614549 |
gatataactctctttttggtgatagaacccctctttttttgtattctttaatctccttcgcgcaaacatcacaactaataccaaattttcaagtgaaaaa |
50614648 |
T |
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| Q |
307 |
caatgaaatttcataacacaaattcctcgtttaggatcgcgacccgatcacaatacttcataaaactgaaaaagatgaaaattaaatatgaacaagaata |
406 |
Q |
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| T |
50614649 |
caatgaaacttcataacacaaattcttcgtttaggatcgcgacccgatcacaatacttcataaaactgaaaaagatgaaaattaaatatgaacaagaata |
50614748 |
T |
|
| Q |
407 |
actactagaaacttgttcttcataatcggtttcttgatcaatttcttgactgttattttgtttcccctccatctctgtgctgctc |
491 |
Q |
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| T |
50614749 |
actactagaaacttgttcttcataatcggtttcttgatcaatttcttgactgttattttgtttcccctccatctctatgttgctc |
50614833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 290 - 482
Target Start/End: Complemental strand, 54016493 - 54016302
Alignment:
| Q |
290 |
aattttcaagtgaaaaacaatgaaatttcataacacaaattcctcgtttaggatcgcgacccgatcacaatacttcataaaactgaaaaaga-tgaaaat |
388 |
Q |
| |
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|||||||||||||| ||||| |||| ||||||||| ||||| ||||||| |||| ||| | ||||||| |||||||||| |||| || | | ||||| |
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| T |
54016493 |
aattttcaagtgaacaacaacgaaacttcataacatgaattcttcgtttaacatcgtgactccgtcacaattcttcataaaattgaacaatacttaaaat |
54016394 |
T |
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| Q |
389 |
taaatatgaacaagaataactactagaaacttgttcttcataatcggtttcttgatcaatttcttgactgtt-attttgtttcccctccatctct |
482 |
Q |
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| T |
54016393 |
taaatatgaagaagaataaactttggaaccttattgttcataatctgtttctgaattaatttattg---gttcattttgtttcccctccatctct |
54016302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 482
Target Start/End: Original strand, 13108284 - 13108501
Alignment:
| Q |
266 |
gcgcaatcgtcacaactaataccaaattttcaagtgaaaaacaatgaaatttcataacacaaattcctcgtttaggatcgcgacccgatcacaatacttc |
365 |
Q |
| |
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|||||| | ||||||| || ||| |||| ||||||| ||||| |||| ||| ||||| ||||| || ||||| || ||||||| |||||||| |||| |
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| T |
13108284 |
gcgcaaacatcacaaccaagaccgaattcacaagtgagtaacaacgaaacttcttaacatgaattcttcatttagcattgcgaccccatcacaattcttc |
13108383 |
T |
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| Q |
366 |
ataaaactgaaaaaga-tgaaaattaaatatgaacaagaataactactagaaacttgttcttcataatcggtttcttgatcaatttcttgactgttattt |
464 |
Q |
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| T |
13108384 |
atggaatcgaaaaatacttaaaattaaacatgaataagaataaaatttggaaccttgttcttcataatcggtttctaaaacaattgcttgattttcattc |
13108483 |
T |
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| Q |
465 |
tgtttcccctccatctct |
482 |
Q |
| |
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| T |
13108484 |
tatttcccctccatctct |
13108501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 455
Target Start/End: Original strand, 18801296 - 18801456
Alignment:
| Q |
295 |
tcaagtgaaaaacaatgaaatttcataacacaaattcctcgtttaggatcgcgacccgatcacaatacttcataaaactgaaaaagatgaaaattaaata |
394 |
Q |
| |
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|||||||| ||||| |||| ||||||||| ||||| ||||||| || ||||||| | ||| ||||||||||| ||| || | |||||||||| |
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| T |
18801296 |
tcaagtgattaacaacgaaacttcataacatgaattcttcgtttaacattgcgaccccaatgcaaaccttcataaaaccgaataatactgaaattaaata |
18801395 |
T |
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| Q |
395 |
tgaacaagaataa-ctactagaaacttgttcttcataatcggtttcttgatcaatttcttga |
455 |
Q |
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| T |
18801396 |
tgagcaagaataaacttcg-gaaccttattcttcacaatcggtttcttgataaatttcttga |
18801456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 482
Target Start/End: Original strand, 18841642 - 18841726
Alignment:
| Q |
398 |
acaagaataactactagaaacttgttcttcataatcggtttcttgatcaatttcttgactgttattttgtttcccctccatctct |
482 |
Q |
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|||||||||||||| |||| ||| ||||||||||| |||||||||||| ||| || ||| | ||| ||||||| || ||||||| |
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| T |
18841642 |
acaagaataactacatgaaatttgctcttcataatcagtttcttgatcagtttattaactttcattatgtttcctcttcatctct |
18841726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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