View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8893_high_5 (Length: 473)
Name: NF8893_high_5
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8893_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 7 - 459
Target Start/End: Original strand, 45336248 - 45336703
Alignment:
| Q |
7 |
tagattattcttcgtttaaaggaatctcggtttttcaattactctagttagaagaaaacattaaaaagatgaaagggaacatggtggtgcatttacaaaa |
106 |
Q |
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| T |
45336248 |
tagattatttttcgtttaaaggaatctcggtttttcaattactctagttagaagaaaacattaaaaagatgaaagggaacatggtggtgcatttacaaaa |
45336347 |
T |
|
| Q |
107 |
tccacagtagcaaaatgtaacattaattaaacaagtacataagatacaagacaccaattttattt---tatttttggaatatagtctttgattctaacac |
203 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| |
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| T |
45336348 |
tccagagtagcaaaatgtaacattaattaaacaagtacataagatacaagacaccaattttttttatttttttttggaatatagtctttgattctaacac |
45336447 |
T |
|
| Q |
204 |
tgaaagaccttctaaatttgatagtcattaatagttgatgcttggagtctgatttgcttattgaatttctgaataaactcttccaacctcttattgcgat |
303 |
Q |
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| T |
45336448 |
tgaaagaccttctaaatttgatagtcattaatagttgatgcttggagtctgatttgcttattgaatttctgaataaactcttccacactcttattgcgat |
45336547 |
T |
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| Q |
304 |
cctcattcgacatcttagaaaactcatttgcttctacttttggttctatcttcatgtaatctaaccttctcactgaattcttcctttcatcaatcacaac |
403 |
Q |
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| T |
45336548 |
cctcattcgacatcttagaaaactcattttcttctacttttagttctatcttcatgtaatctaaccttctcactgaattcttcctttcatcaataacaac |
45336647 |
T |
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| Q |
404 |
atacttggctctattgtaggaaattaatgcagctttctctaatccatgttccttat |
459 |
Q |
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| T |
45336648 |
atacttggctctattgtaggaaattaatgcagctttctctaatccatgttccttat |
45336703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 173 - 420
Target Start/End: Original strand, 6184704 - 6184963
Alignment:
| Q |
173 |
atttttggaatatagtctttgattctaacactgaaa-gaccttctaaatttgatagtcattaat--------agttgatgcttggagtctgatttgctta |
263 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| |||| |||||||||||| | |||| || |||||||||||| ||||| ||||||||| |
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| T |
6184704 |
atttttggaatatagtctttgattctaactctgaaaagaccgtctaaatttgatggacattgattaatttatagttgatgcttgaagtctaatttgctta |
6184803 |
T |
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| Q |
264 |
ttgaatttctgaataaactcttccaacctcttattgcgatcctcattcgacatcttagaaaactcatt---tgcttctacttttggttctatcttcatgt |
360 |
Q |
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||||||||||||||||| ||||||| |||||||||| |||| ||||| |||||||||||||||||||| | |||||| ||||||||| |||||||| |
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| T |
6184804 |
ttgaatttctgaataaattcttccaccctcttattgagatcttcatttgacatcttagaaaactcattttcttcttctatttttggttccatcttcatag |
6184903 |
T |
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| Q |
361 |
aatctaaccttctcactgaattcttcctttcatcaatcacaacatacttggctctattgt |
420 |
Q |
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| T |
6184904 |
actctaaccttctcactgagttcctcctttcatcaatcacaacatgcttggctctattgt |
6184963 |
T |
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