View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8893_high_6 (Length: 461)
Name: NF8893_high_6
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8893_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 11 - 423
Target Start/End: Original strand, 48679706 - 48680118
Alignment:
| Q |
11 |
cacagacaaactcagtttcaatttcaacagcttcgtgtacaatattttgaacccgctcggaatctagctgtctcagtaacaagctgcaggcaattgcaat |
110 |
Q |
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| T |
48679706 |
cacagacaaactcagtttcaatttcaacagcttcgtgtacaatattttgaacccgctcggaatctagctgtctcagtaacaagctgcaggcaattgcaat |
48679805 |
T |
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| Q |
111 |
ccaatgaatcatccaatactaatatcaaaacattacatccttatacaacttcatttatttatactaaatgaatgaaaaatttaaccaatactacctgtat |
210 |
Q |
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| T |
48679806 |
ccattgaatcatccaatactaatatcaaaacattacatccttatacagcttcatttatttatactaaatgaatgaaaaatttaaccaatactacctgtat |
48679905 |
T |
|
| Q |
211 |
agcatgcaagcaaaatcacagtgaagaccctcgtctctagagattagctcatttgagaatgtcagacctggcattaatcctctctttttaagccaaaata |
310 |
Q |
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| T |
48679906 |
agcatgcaagcaaaatcacagtgaagaccctcgtctctagagattagctcatttgagaatgtcagacctggcattaatcctctctttttaagccaaaata |
48680005 |
T |
|
| Q |
311 |
tggcacagaagctgaaagcaaaccccaattgaaaagaagggaaacaagttaagtaaataggacaaatctcgttacaacttttgaaaaagaaacaagggaa |
410 |
Q |
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| T |
48680006 |
tggcacagaagctgaaagcaaaccccaattgaaaagaagggaaacaagttaagtaaataggacaaaactcgttacaacttttgaaaaagaaacaagggaa |
48680105 |
T |
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| Q |
411 |
gttctataagttg |
423 |
Q |
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| T |
48680106 |
gttctataagttg |
48680118 |
T |
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