View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8893_low_11 (Length: 559)

Name: NF8893_low_11
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8893_low_11
NF8893_low_11
[»] chr8 (25 HSPs)
chr8 (171-557)||(10279365-10279750)
chr8 (1-82)||(10279195-10279276)
chr8 (428-550)||(17888052-17888174)
chr8 (428-557)||(8358752-8358881)
chr8 (384-453)||(35225944-35226013)
chr8 (218-280)||(759871-759933)
chr8 (382-453)||(12157181-12157256)
chr8 (382-453)||(19262657-19262732)
chr8 (245-282)||(16307356-16307393)
chr8 (245-282)||(37250749-37250786)
chr8 (415-504)||(41527035-41527124)
chr8 (412-504)||(15342303-15342395)
chr8 (412-504)||(15431368-15431460)
chr8 (412-504)||(15522672-15522764)
chr8 (246-285)||(16311105-16311144)
chr8 (250-281)||(32917368-32917399)
chr8 (246-285)||(34802979-34803018)
chr8 (471-509)||(18430871-18430909)
chr8 (426-496)||(38290544-38290614)
chr8 (430-504)||(43215553-43215627)
chr8 (245-282)||(10901023-10901060)
chr8 (245-282)||(16249620-16249657)
chr8 (245-282)||(16312830-16312867)
chr8 (245-282)||(34801284-34801321)
chr8 (251-299)||(32918215-32918263)
[»] chr4 (17 HSPs)
chr4 (404-550)||(13918224-13918370)
chr4 (415-504)||(6554533-6554622)
chr4 (414-542)||(37530085-37530212)
chr4 (428-496)||(316508-316576)
chr4 (428-559)||(6559827-6559958)
chr4 (237-282)||(35695693-35695738)
chr4 (245-282)||(55050497-55050534)
chr4 (462-521)||(48683524-48683583)
chr4 (246-285)||(55051600-55051639)
chr4 (24-82)||(13919111-13919169)
chr4 (426-503)||(285103-285180)
chr4 (245-282)||(26289579-26289616)
chr4 (437-557)||(55051911-55052032)
chr4 (393-453)||(4236391-4236451)
chr4 (393-453)||(4279722-4279782)
chr4 (428-504)||(42727175-42727251)
chr4 (439-504)||(52542093-52542160)
[»] chr6 (15 HSPs)
chr6 (398-545)||(15878817-15878964)
chr6 (412-502)||(9449611-9449701)
chr6 (426-504)||(4852811-4852889)
chr6 (426-504)||(11554389-11554467)
chr6 (405-453)||(10191104-10191152)
chr6 (430-504)||(1599848-1599922)
chr6 (24-82)||(15879710-15879768)
chr6 (245-282)||(20872935-20872972)
chr6 (246-285)||(9449955-9449994)
chr6 (245-300)||(21985960-21986015)
chr6 (426-504)||(24397919-24397996)
chr6 (428-557)||(18089938-18090067)
chr6 (245-282)||(23409670-23409707)
chr6 (413-453)||(2953185-2953225)
chr6 (245-285)||(21055743-21055783)
[»] chr5 (11 HSPs)
chr5 (411-503)||(3008216-3008310)
chr5 (413-509)||(3009391-3009489)
chr5 (245-282)||(4062611-4062648)
chr5 (245-282)||(7332521-7332558)
chr5 (412-501)||(11769770-11769859)
chr5 (246-285)||(4063709-4063748)
chr5 (417-504)||(9024946-9025033)
chr5 (245-300)||(23570923-23570978)
chr5 (246-285)||(29863730-29863769)
chr5 (437-557)||(4064019-4064140)
chr5 (245-282)||(29865455-29865492)
[»] chr3 (11 HSPs)
chr3 (428-557)||(20779566-20779695)
chr3 (412-504)||(10020102-10020194)
chr3 (405-477)||(40416275-40416347)
chr3 (401-464)||(10021092-10021155)
chr3 (399-464)||(32971201-32971266)
chr3 (402-453)||(51083-51134)
chr3 (401-464)||(10021811-10021874)
chr3 (250-300)||(32264759-32264809)
chr3 (245-282)||(19816985-19817022)
chr3 (245-334)||(40057311-40057400)
chr3 (237-277)||(9264817-9264857)
[»] chr7 (7 HSPs)
chr7 (407-557)||(18290421-18290571)
chr7 (384-453)||(36837376-36837445)
chr7 (418-559)||(6678296-6678437)
chr7 (24-82)||(18289622-18289680)
chr7 (245-282)||(29913043-29913080)
chr7 (426-504)||(42078961-42079041)
chr7 (413-453)||(43989679-43989719)
[»] chr1 (10 HSPs)
chr1 (414-542)||(28963486-28963613)
chr1 (245-334)||(7843824-7843913)
chr1 (418-453)||(3982724-3982759)
chr1 (246-285)||(17001519-17001558)
chr1 (245-300)||(19103057-19103112)
chr1 (246-285)||(34161702-34161741)
chr1 (423-453)||(47783153-47783183)
chr1 (245-282)||(17006075-17006112)
chr1 (428-496)||(31089550-31089618)
chr1 (387-495)||(49882679-49882787)
[»] scaffold2049 (1 HSPs)
scaffold2049 (414-545)||(212-342)
[»] scaffold0012 (1 HSPs)
scaffold0012 (414-545)||(94714-94844)
[»] chr2 (13 HSPs)
chr2 (428-555)||(20106611-20106738)
chr2 (428-496)||(31963709-31963777)
chr2 (430-504)||(5788097-5788171)
chr2 (424-496)||(14905101-14905171)
chr2 (415-504)||(31965846-31965935)
chr2 (413-453)||(17680963-17681003)
chr2 (430-504)||(41754007-41754081)
chr2 (430-504)||(45661109-45661183)
chr2 (5-82)||(14908883-14908960)
chr2 (249-317)||(5788410-5788478)
chr2 (426-462)||(36720076-36720112)
chr2 (237-277)||(45055177-45055217)
chr2 (237-277)||(45660634-45660674)
[»] scaffold0114 (2 HSPs)
scaffold0114 (415-504)||(37032-37121)
scaffold0114 (403-504)||(1350-1449)
[»] scaffold0284 (1 HSPs)
scaffold0284 (428-559)||(7537-7668)
[»] scaffold0051 (1 HSPs)
scaffold0051 (385-452)||(18270-18337)
[»] scaffold0159 (2 HSPs)
scaffold0159 (430-504)||(32470-32544)
scaffold0159 (249-317)||(32783-32851)
[»] scaffold0107 (1 HSPs)
scaffold0107 (417-463)||(43666-43712)
[»] scaffold0380 (1 HSPs)
scaffold0380 (430-501)||(15272-15343)
[»] scaffold0169 (1 HSPs)
scaffold0169 (238-296)||(3686-3744)
[»] scaffold0119 (1 HSPs)
scaffold0119 (245-279)||(41046-41080)
[»] scaffold0211 (1 HSPs)
scaffold0211 (415-504)||(18458-18547)
[»] scaffold1345 (1 HSPs)
scaffold1345 (413-453)||(1845-1885)
[»] scaffold0216 (1 HSPs)
scaffold0216 (428-504)||(29169-29245)


Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 171 - 557
Target Start/End: Original strand, 10279365 - 10279750
Alignment:
Q  171 gaaattactacaattttgatcttttacaatgatgtatcannnnnnncaattaggtctaattttggtgtaaatttattacccaaaaatctccaactccttc 270  Q
    ||||||||| |||||||| ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10279365 gaaattacttcaattttggtcttttacaatgatgtatcatttttttcaattaggtctaattttggtgtaaatttattacccaaaaatctccaactccttc 10279464  T
Q  271 aacaaactcatataaatatcatcaactcactttattccctacactctaatagacaaaacacacactacannnnnnnnnnccttatcgtctctctcatgtt 370  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||    
T  10279465 aacaaactcatataaatatcttcaactcactttattccctacactctaatagacaaaacacacactacattttttttt-ccttatcgtctctctcatgtt 10279563  T
Q  371 caaattccttatcgtcacatacttacagacgtggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatga 470  Q
     |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10279564 taaattccttatcgtcacataattacagacgtggatagtcgcacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatga 10279663  T
Q  471 aagagtagattttcaacaacatataaatgagatggtccaaatgtctaatgccttcaggttttttgtaaagatgtgatgtccatctca 557  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10279664 aagagtagattttcaacaacatataaatgagatggtccaaatgtctaatgccttcaggttttttgtaaagatgtgatgtcaatctca 10279750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 10279195 - 10279276
Alignment:
Q  1 cacttttgtggttgttcatagcttaatgtgattatccaaccgagtttatgcttctccaaaagtccgaacattatgatgaact 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10279195 cacttttgtggttgttcatagcttaatgtgattatccaaccgagtttatgcttctccaaaagtccgaacattatgatgaact 10279276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 428 - 550
Target Start/End: Original strand, 17888052 - 17888174
Alignment:
Q  428 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatgtctaatgccttcag 527  Q
    ||||||||||||||| ||||||||||| || |||| |  ||| ||||||||||||| |||||||||||| |||||||  | ||||   ||||| ||| ||    
T  17888052 atgttaatgtgtcaaatgtgagttaacattatacactggatggaagagtagattttgaacaacatataagtgagatgaccgaaatacataatgtcttaag 17888151  T
Q  528 gttttttgtaaagatgtgatgtc 550  Q
    ||||| |||||||||||| ||||    
T  17888152 gttttatgtaaagatgtggtgtc 17888174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 428 - 557
Target Start/End: Complemental strand, 8358881 - 8358752
Alignment:
Q  428 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatgtctaatgccttcag 527  Q
    ||||||||||||||| ||||||||||| || |||| |  ||| ||||||||||||| |||||||||||| |||||||  | ||||   ||||| ||| ||    
T  8358881 atgttaatgtgtcaaatgtgagttaacgttatacactcgatggaagagtagattttgaacaacatataagtgagatgaccgaaatacataatgtcttaag 8358782  T
Q  528 gttttttgtaaagatgtgatgtccatctca 557  Q
    ||||| |||||| ||||| |||| ||||||    
T  8358781 gttttatgtaaatatgtggtgtcaatctca 8358752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 453
Target Start/End: Complemental strand, 35226013 - 35225944
Alignment:
Q  384 gtcacatacttacagacgtggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaa 453  Q
    |||||||| ||||| || |||| |||||||||||||| ||| ||||||||||||||||||| ||||||||    
T  35226013 gtcacataattacaaacttggagagtcacacacttgaataaaagatgttaatgtgtcaagtatgagttaa 35225944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 759871 - 759933
Alignment:
Q  218 aattaggtctaattttggtgtaaatttattacccaaaaatctccaactccttcaacaaactca 280  Q
    ||||| ||||||||||   ||||||| |||| ||||||||| |||||||||||||||||||||    
T  759871 aattaagtctaattttttggtaaattaattatccaaaaatccccaactccttcaacaaactca 759933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 453
Target Start/End: Original strand, 12157181 - 12157256
Alignment:
Q  382 tcgtcacatacttacagacgtggat----agtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaa 453  Q
    |||||||||| |||||||| |||||    ||||| |||||||||||| |||| |||||||||||| ||||||||||    
T  12157181 tcgtcacataattacagacatggatggagagtcatacacttgattaaaagatattaatgtgtcaattgtgagttaa 12157256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 453
Target Start/End: Complemental strand, 19262732 - 19262657
Alignment:
Q  382 tcgtcacatacttacagacgtggat----agtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaa 453  Q
    |||||||||| |||||||| |||||    |||| ||||||||||||| |||||||||| |||||||||||| ||||    
T  19262732 tcgtcacataattacagacatggatggagagtcgcacacttgattaaaagatgttaatctgtcaagtgtgacttaa 19262657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 16307393 - 16307356
Alignment:
Q  245 attacccaaaaatctccaactccttcaacaaactcata 282  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  16307393 attacccaaaaatctccaactcctttaacaaactcata 16307356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 37250786 - 37250749
Alignment:
Q  245 attacccaaaaatctccaactccttcaacaaactcata 282  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  37250786 attacccaaaaatctccaactcctttaacaaactcata 37250749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 415 - 504
Target Start/End: Complemental strand, 41527124 - 41527035
Alignment:
Q  415 acttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 504  Q
    |||||| ||| |||| |||||||||||||||||||||||  ||||| | |  ||  ||||||||||||| || ||||||||| |||||||    
T  41527124 acttgaataagagatattaatgtgtcaagtgtgagttaaaattctatagtggatagaagagtagattttgaataacatataagtgagatg 41527035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 504
Target Start/End: Complemental strand, 15342395 - 15342303
Alignment:
Q  412 cacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 504  Q
    ||||||||||||| |||| ||||||| | |||||||||||||  || || |||  ||| |||| || ||||| |||||||||||| |||||||    
T  15342395 cacacttgattaagagatattaatgtattaagtgtgagttaaagttatatattggatggaagattacattttgaacaacatataagtgagatg 15342303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 504
Target Start/End: Complemental strand, 15431460 - 15431368
Alignment:
Q  412 cacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 504  Q
    ||||||||||||| |||| ||||||| | |||||||||||||  || || |||  ||| |||| || ||||| |||||||||||| |||||||    
T  15431460 cacacttgattaagagatattaatgtattaagtgtgagttaaagttatatattggatggaagattacattttgaacaacatataagtgagatg 15431368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 504
Target Start/End: Complemental strand, 15522764 - 15522672
Alignment:
Q  412 cacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 504  Q
    ||||||||||||| |||| ||||||| | |||||||||||||  || || |||  ||| |||| || ||||| |||||||||||| |||||||    
T  15522764 cacacttgattaagagatattaatgtattaagtgtgagttaaagttatatattggatggaagattacattttgaacaacatataagtgagatg 15522672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 285
Target Start/End: Complemental strand, 16311144 - 16311105
Alignment:
Q  246 ttacccaaaaatctccaactccttcaacaaactcatataa 285  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  16311144 ttacccaaaaatcttcaaatccttcaacaaactcatataa 16311105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 281
Target Start/End: Original strand, 32917368 - 32917399
Alignment:
Q  250 ccaaaaatctccaactccttcaacaaactcat 281  Q
    ||||||||||||||||||||||||||||||||    
T  32917368 ccaaaaatctccaactccttcaacaaactcat 32917399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 285
Target Start/End: Original strand, 34802979 - 34803018
Alignment:
Q  246 ttacccaaaaatctccaactccttcaacaaactcatataa 285  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  34802979 ttacccaaaaatcttcaaatccttcaacaaactcatataa 34803018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 509
Target Start/End: Complemental strand, 18430909 - 18430871
Alignment:
Q  471 aagagtagattttcaacaacatataaatgagatggtcca 509  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  18430909 aagagtaaattttcaacaacatataaatgagatgctcca 18430871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 496
Target Start/End: Original strand, 38290544 - 38290614
Alignment:
Q  426 agatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataa 496  Q
    |||||||||||||||||||||||||||   || ||||||||||| ||||| | || || || |||||||||    
T  38290544 agatgttaatgtgtcaagtgtgagttataattttacattacatgcaagagaaaatgtttaaaaacatataa 38290614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 504
Target Start/End: Complemental strand, 43215627 - 43215553
Alignment:
Q  430 gttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 504  Q
    ||||||||| || ||||||||||||||| ||||||  ||| ||||||| || || | |||||||||| |||||||    
T  43215627 gttaatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatg 43215553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 10901060 - 10901023
Alignment:
Q  245 attacccaaaaatctccaactccttcaacaaactcata 282  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  10901060 attacccaataatttccaactccttcaacaaactcata 10901023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 16249657 - 16249620
Alignment:
Q  245 attacccaaaaatctccaactccttcaacaaactcata 282  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  16249657 attacccaaaaatctcaaactcctttaacaaactcata 16249620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 16312867 - 16312830
Alignment:
Q  245 attacccaaaaatctccaactccttcaacaaactcata 282  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  16312867 attacccaaaaatctcaaactcctttaacaaactcata 16312830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 34801284 - 34801321
Alignment:
Q  245 attacccaaaaatctccaactccttcaacaaactcata 282  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  34801284 attacccaaaaatctcaaactcctttaacaaactcata 34801321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 32918215 - 32918263
Alignment:
Q  251 caaaaatctccaactccttcaacaaactcatataaatatcatcaactca 299  Q
    |||| ||||||| |||||||||||||| ||||||| ||||| |||||||    
T  32918215 caaacatctccacctccttcaacaaacccatataattatcagcaactca 32918263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 404 - 550
Target Start/End: Original strand, 13918224 - 13918370
Alignment:
Q  404 gatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagat 503  Q
    |||||||||||| || ||||  | ||||||||||||||| ||||||||||| || ||||||  ||| |||||||||||||||||||||||||| ||||||    
T  13918224 gatagtcacacaattcattaggatatgttaatgtgtcaaatgtgagttaacgttatacattggatggaagagtagattttcaacaacatataattgagat 13918323  T
Q  504 ggtccaaatgtctaatgccttcaggttttttgtaaagatgtgatgtc 550  Q
    |  | ||||   ||||| ||| ||||||| |||||||||||| ||||    
T  13918324 gaccgaaatacataatgtcttaaggttttatgtaaagatgtggtgtc 13918370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 415 - 504
Target Start/End: Original strand, 6554533 - 6554622
Alignment:
Q  415 acttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 504  Q
    |||||| ||| ||||||||||||||||||||||||||||  ||||| | |  ||| ||||||||||||| || ||||||||| |||||||    
T  6554533 acttgaataagagatgttaatgtgtcaagtgtgagttaaaattctatagtggatggaagagtagattttgaataacatataagtgagatg 6554622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 414 - 542
Target Start/End: Complemental strand, 37530212 - 37530085
Alignment:
Q  414 cacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatg 513  Q
    ||||| ||||| |||||||||||||||||||| ||||| || ||||||||   ||| ||||| | |||||||||| ||||| ||||||||| ||||  |     
T  37530212 cacttcattaagagatgttaatgtgtcaagtgcgagttgacattctacatcggatggaagagaaaattttcaacagcatat-aatgagatgttccatgta 37530114  T
Q  514 tctaatgccttcaggttttttgtaaagat 542  Q
    || |||||||| ||||||| ||| |||||    
T  37530113 tccaatgccttaaggttttgtgttaagat 37530085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 428 - 496
Target Start/End: Original strand, 316508 - 316576
Alignment:
Q  428 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataa 496  Q
    ||||||||||||||| || |||||||  || ||||||| ||||||||||||||||| | ||||||||||    
T  316508 atgttaatgtgtcaaatgcgagttaaaattatacattagatgaaagagtagattttgagcaacatataa 316576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 428 - 559
Target Start/End: Original strand, 6559827 - 6559958
Alignment:
Q  428 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatgtctaatgccttcag 527  Q
    ||||||||||||||| || |||||||| || || |||| ||| ||||||||||||| | |||||||||| | |||||  | |||| ||||||  ||| ||    
T  6559827 atgttaatgtgtcaaatgcgagttaacgttatagattagatggaagagtagattttgagcaacatataagtcagatgaccaaaatatctaatatcttaag 6559926  T
Q  528 gttttttgtaaagatgtgatgtccatctcatt 559  Q
    ||||  ||| ||| |||| |||| ||||||||    
T  6559927 gtttcatgtgaagctgtggtgtcaatctcatt 6559958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 35695693 - 35695738
Alignment:
Q  237 gtaaatttattacccaaaaatctccaactccttcaacaaactcata 282  Q
    ||||| |||||| ||||||||||||||||||||||| |||||||||    
T  35695693 gtaaagttattatccaaaaatctccaactccttcaataaactcata 35695738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 55050497 - 55050534
Alignment:
Q  245 attacccaaaaatctccaactccttcaacaaactcata 282  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  55050497 attacccaaaaatctccaactcctttaacaaactcata 55050534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 521
Target Start/End: Original strand, 48683524 - 48683583
Alignment:
Q  462 attacatgaaagagtagattttcaacaacatataaatgagatggtccaaatgtctaatgc 521  Q
    |||| ||||||||||| ||||| ||||||||||| |||||||| |||| || ||||||||    
T  48683524 attaaatgaaagagtatattttgaacaacatatagatgagatgatccatatatctaatgc 48683583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 285
Target Start/End: Original strand, 55051600 - 55051639
Alignment:
Q  246 ttacccaaaaatctccaactccttcaacaaactcatataa 285  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  55051600 ttacccaaaaatcttcaaatccttcaacaaactcatataa 55051639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 13919111 - 13919169
Alignment:
Q  24 taatgtgattatccaaccgagtttatgcttctccaaaagtccgaacattatgatgaact 82  Q
    |||||||||||||||||| ||||||  || || | ||||||| ||||||||||||||||    
T  13919111 taatgtgattatccaacctagtttacactcctgcgaaagtcctaacattatgatgaact 13919169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 503
Target Start/End: Original strand, 285103 - 285180
Alignment:
Q  426 agatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagat 503  Q
    ||||||||||| |||| ||| ||||||| ||||||  ||  ||| ||||||||||||| |||||||| ||| ||||||    
T  285103 agatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacatgtaagtgagat 285180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 26289616 - 26289579
Alignment:
Q  245 attacccaaaaatctccaactccttcaacaaactcata 282  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  26289616 attacccaaaaatctcaaactcctttaacaaactcata 26289579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 557
Target Start/End: Original strand, 55051911 - 55052032
Alignment:
Q  437 tgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaa-catataaatgagatggtccaaatgtctaatgccttcaggttttttg 535  Q
    |||||||||||||||| |  ||||||||  ||| | ||||| ||||| || || ||||||| |||||||   || |||||||||||||| ||||||| |     
T  55051911 tgtcaagtgtgagttagcactctacattggatggatgagtatattttgaaaaaacatataagtgagatgactcatatgtctaatgccttaaggttttatc 55052010  T
Q  536 taaagatgtgatgtccatctca 557  Q
    |||||||| | |||| ||||||    
T  55052011 taaagatgcggtgtcaatctca 55052032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 4236451 - 4236391
Alignment:
Q  393 ttacagacgtggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaa 453  Q
    ||||||||||||| ||| ||||| |||||||| | ||||| |||| |||||||||| ||||    
T  4236451 ttacagacgtggagagttacacaattgattaacaaatgttgatgtatcaagtgtgaattaa 4236391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 4279782 - 4279722
Alignment:
Q  393 ttacagacgtggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaa 453  Q
    ||||||||||||| ||| ||||| |||||||| | ||||| |||| |||||||||| ||||    
T  4279782 ttacagacgtggagagttacacaattgattaacaaatgttgatgtatcaagtgtgaattaa 4279722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 504
Target Start/End: Complemental strand, 42727251 - 42727175
Alignment:
Q  428 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 504  Q
    ||||||||||||||| | ||||||||  ||||||| || ||||| |||||||| || || ||||||||  |||||||    
T  42727251 atgttaatgtgtcaaatatgagttaaagttctacaatagatgaatgagtagatattgaataacatatatgtgagatg 42727175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 504
Target Start/End: Complemental strand, 52542160 - 52542093
Alignment:
Q  439 tcaagtgtgagttaaccttctacat--tacatgaaagagtagattttcaacaacatataaatgagatg 504  Q
    |||||||||||||||| ||||||||  |  ||||||||||||||||| | ||| ||| ||||||||||    
T  52542160 tcaagtgtgagttaacattctacatattggatgaaagagtagattttgatcaagatagaaatgagatg 52542093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 398 - 545
Target Start/End: Original strand, 15878817 - 15878964
Alignment:
Q  398 gacgtggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaa 497  Q
    ||||| |||||||||||| || ||||  | ||||||||||||||| ||||||||||| || ||||||  ||| ||||||||||||| ||||||||||||     
T  15878817 gacgtagatagtcacacaattcattaggatatgttaatgtgtcaaatgtgagttaacgttatacattggatggaagagtagattttgaacaacatataat 15878916  T
Q  498 tgagatggtccaaatgtctaatgccttcaggttttttgtaaagatgtg 545  Q
    |||||||  | |||    ||||| ||| ||||||| ||||||||||||    
T  15878917 tgagatgaccgaaacacataatgtcttaaggttttctgtaaagatgtg 15878964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 412 - 502
Target Start/End: Complemental strand, 9449701 - 9449611
Alignment:
Q  412 cacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgaga 502  Q
    ||||||||||||| ||||||||| ||||||||||||||||| | |||||||||  ||| | ||||| ||||| || ||||||||| |||||    
T  9449701 cacacttgattaagagatgttaacgtgtcaagtgtgagttaccattctacattggatggatgagtatattttgaaaaacatataagtgaga 9449611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 426 - 504
Target Start/End: Original strand, 4852811 - 4852889
Alignment:
Q  426 agatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 504  Q
    |||||||||||||||| ||||||||||||||||||||||  ||| | |||||| | || |||||||||| | |||||||    
T  4852811 agatgttaatgtgtcatgtgtgagttaaccttctacattggatgcaggagtagttgttaaacaacatattagtgagatg 4852889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 426 - 504
Target Start/End: Complemental strand, 11554467 - 11554389
Alignment:
Q  426 agatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 504  Q
    |||||||||||||||| ||||||||||||||||||||||  ||| | |||||| | || |||||||||| | |||||||    
T  11554467 agatgttaatgtgtcatgtgtgagttaaccttctacattggatgcaggagtagttgttaaacaacatattagtgagatg 11554389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 453
Target Start/End: Original strand, 10191104 - 10191152
Alignment:
Q  405 atagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaa 453  Q
    |||||| ||||||||||||| |||||||||||| |||||||||||||||    
T  10191104 atagtcgcacacttgattaaaagatgttaatgtatcaagtgtgagttaa 10191152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 504
Target Start/End: Original strand, 1599848 - 1599922
Alignment:
Q  430 gttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 504  Q
    |||||||||||| |||| | |||| ||| ||||||| ||| |||||||||| || | ||||||||||||||||||    
T  1599848 gttaatgtgtcatgtgtcatttaaacttatacattatatgtaagagtagatattgagcaacatataaatgagatg 1599922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 15879710 - 15879768
Alignment:
Q  24 taatgtgattatccaaccgagtttatgcttctccaaaagtccgaacattatgatgaact 82  Q
    |||||||||||||||||| |||||| ||| || | ||||||| ||||||||||||||||    
T  15879710 taatgtgattatccaacccagtttacgctcctgcgaaagtcctaacattatgatgaact 15879768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 20872935 - 20872972
Alignment:
Q  245 attacccaaaaatctccaactccttcaacaaactcata 282  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  20872935 attacccaaaaatctccaactcctttaacaaactcata 20872972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 285
Target Start/End: Complemental strand, 9449994 - 9449955
Alignment:
Q  246 ttacccaaaaatctccaactccttcaacaaactcatataa 285  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  9449994 ttacccaaaaatcttcaaatccttcaacaaactcatataa 9449955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 21985960 - 21986015
Alignment:
Q  245 attacccaaaaatctccaactccttcaacaaactcatataaatatcatcaactcac 300  Q
    |||| |||||||||| |||||||||||||||||||||| |  ||||| ||||||||    
T  21985960 attatccaaaaatcttcaactccttcaacaaactcatagatttatcaacaactcac 21986015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 504
Target Start/End: Original strand, 24397919 - 24397996
Alignment:
Q  426 agatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 504  Q
    |||| ||||||||||| ||||||||||| ||||||||||| | |||  |||| || || | ||||||||||||||||||    
T  24397919 agatattaatgtgtcatgtgtgagttaa-cttctacattagacgaattagtatatattgagcaacatataaatgagatg 24397996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 557
Target Start/End: Complemental strand, 18090067 - 18089938
Alignment:
Q  428 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatgtctaatgccttcag 527  Q
    |||||||| |||||| ||| | ||||  ||||| ||| | ||||||||||||| ||||  ||||||||| |||||||  | | ||  |||||||||| ||    
T  18090067 atgttaatatgtcaattgtcacttaaagttctatattccttgaaagagtagatgttcagaaacatataattgagatgaacaatatacctaatgccttaag 18089968  T
Q  528 gttttttgtaaagatgtgatgtccatctca 557  Q
    |||||  || |||||||| |||| ||||||    
T  18089967 gttttgggtgaagatgtggtgtcaatctca 18089938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 23409707 - 23409670
Alignment:
Q  245 attacccaaaaatctccaactccttcaacaaactcata 282  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  23409707 attacccaaaaatctcaaactcctttaacaaactcata 23409670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 453
Target Start/End: Original strand, 2953185 - 2953225
Alignment:
Q  413 acacttgattaatagatgttaatgtgtcaagtgtgagttaa 453  Q
    |||||||||| |||||||||  |||||||||||||||||||    
T  2953185 acacttgattgatagatgttgttgtgtcaagtgtgagttaa 2953225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 21055783 - 21055743
Alignment:
Q  245 attacccaaaaatctccaactccttcaacaaactcatataa 285  Q
    ||||||||||||||| |||||||||||||||| ||| ||||    
T  21055783 attacccaaaaatcttcaactccttcaacaaaatcacataa 21055743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 411 - 503
Target Start/End: Complemental strand, 3008310 - 3008216
Alignment:
Q  411 acacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctac--attacatgaaagagtagattttcaacaacatataaatgagat 503  Q
    |||| ||||||||| | ||||||| ||||||||||||||||||| ||||||  |||  ||||||||||||||||| | |||||||||||||||||    
T  3008310 acacgcttgattaaaatatgttaacgtgtcaagtgtgagttaacgttctacgtatttgatgaaagagtagattttgatcaacatataaatgagat 3008216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 413 - 509
Target Start/End: Complemental strand, 3009489 - 3009391
Alignment:
Q  413 acacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctac--attacatgaaagagtagattttcaacaacatataaatgagatggtcca 509  Q
    |||||||||||| | ||  ||||||||||||||||||||||| ||||||  |||  |||||| |||||||||| | |||||||||||||| ||| ||||    
T  3009489 acacttgattaaaatataataatgtgtcaagtgtgagttaacgttctacatattggatgaaaaagtagattttgatcaacatataaatgaaatgatcca 3009391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 4062611 - 4062648
Alignment:
Q  245 attacccaaaaatctccaactccttcaacaaactcata 282  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  4062611 attacccaaaaatctccaactcctttaacaaactcata 4062648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 7332558 - 7332521
Alignment:
Q  245 attacccaaaaatctccaactccttcaacaaactcata 282  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  7332558 attacccaaaaatctccaactcctttaacaaactcata 7332521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 412 - 501
Target Start/End: Complemental strand, 11769859 - 11769770
Alignment:
Q  412 cacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgag 501  Q
    ||||||||||||| ||||||||||||||||||| | ||||||  ||| | |||  ||| ||||||||||||| | ||||| |||| ||||    
T  11769859 cacacttgattaagagatgttaatgtgtcaagtattagttaaagttcaaaattggatggaagagtagattttgatcaacacataactgag 11769770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 285
Target Start/End: Original strand, 4063709 - 4063748
Alignment:
Q  246 ttacccaaaaatctccaactccttcaacaaactcatataa 285  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  4063709 ttacccaaaaatcttcaaatccttcaacaaactcatataa 4063748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 504
Target Start/End: Original strand, 9024946 - 9025033
Alignment:
Q  417 ttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 504  Q
    |||| ||| ||||||||||||||||||||||||||||  || || | |  ||  ||||||||||||| || ||||||||| |||||||    
T  9024946 ttgaataagagatgttaatgtgtcaagtgtgagttaaaattatatagtggatagaagagtagattttgaataacatataagtgagatg 9025033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 23570978 - 23570923
Alignment:
Q  245 attacccaaaaatctccaactccttcaacaaactcatataaatatcatcaactcac 300  Q
    |||| |||||||||| |||||||||||||||||||||| |  ||||| ||||||||    
T  23570978 attatccaaaaatcttcaactccttcaacaaactcatagatttatcaacaactcac 23570923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 285
Target Start/End: Complemental strand, 29863769 - 29863730
Alignment:
Q  246 ttacccaaaaatctccaactccttcaacaaactcatataa 285  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  29863769 ttacccaaaaatcttcaaatccttcaacaaactcatataa 29863730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 557
Target Start/End: Original strand, 4064019 - 4064140
Alignment:
Q  437 tgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaa-catataaatgagatggtccaaatgtctaatgccttcaggttttttg 535  Q
    |||||||||||||||| |  ||||||||  ||| | ||||| ||||| || || ||||||| |||||||   || |||||||||||||| ||||||| |     
T  4064019 tgtcaagtgtgagttaccactctacattggatggatgagtatattttgaaaaaacatataagtgagatgactcatatgtctaatgccttaaggttttatc 4064118  T
Q  536 taaagatgtgatgtccatctca 557  Q
    |||||||| | |||| ||||||    
T  4064119 taaagatgcggtgtcaatctca 4064140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 29865492 - 29865455
Alignment:
Q  245 attacccaaaaatctccaactccttcaacaaactcata 282  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  29865492 attacccaaaaatctcaaactcctttaacaaactcata 29865455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 428 - 557
Target Start/End: Original strand, 20779566 - 20779695
Alignment:
Q  428 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatgtctaatgccttcag 527  Q
    ||||||||||||||| ||||||||||| || |||| |  ||| ||||||||||||| |||||||||||| |||||||  | ||||   ||||| ||| ||    
T  20779566 atgttaatgtgtcaaatgtgagttaacattatacactggatggaagagtagattttgaacaacatataagtgagatgaccgaaatacataatgtcttgag 20779665  T
Q  528 gttttttgtaaagatgtgatgtccatctca 557  Q
    ||||| |||||| ||||| |||| ||||||    
T  20779666 gttttatgtaaatatgtggtgtcaatctca 20779695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 412 - 504
Target Start/End: Original strand, 10020102 - 10020194
Alignment:
Q  412 cacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 504  Q
    ||||||||||||||||||||||| || |||||||||| |||   ||||| |||  ||| ||| ||||||||| |||||||||||| |||||||    
T  10020102 cacacttgattaatagatgttaacgtatcaagtgtgatttagagttctatattgaatggaagggtagattttgaacaacatataagtgagatg 10020194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 405 - 477
Target Start/End: Original strand, 40416275 - 40416347
Alignment:
Q  405 atagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagta 477  Q
    |||||||||||||||||||| |||||||||||||| |||| |||||| || |||||||||  |||||| ||||    
T  40416275 atagtcacacacttgattaagagatgttaatgtgttaagtatgagttgacgttctacattggatgaaatagta 40416347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 464
Target Start/End: Original strand, 10021092 - 10021155
Alignment:
Q  401 gtggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacatt 464  Q
    |||||||||| |||||||||| || ||||||||||| |||||||||||||| || |||||||||    
T  10021092 gtggatagtcgcacacttgataaagagatgttaatgagtcaagtgtgagtttacgttctacatt 10021155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 464
Target Start/End: Complemental strand, 32971266 - 32971201
Alignment:
Q  399 acgtggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacatt 464  Q
    |||||||||||| |||||||||| ||  |||||||||| |||||||||||||| || |||||||||    
T  32971266 acgtggatagtcgcacacttgataaagcgatgttaatgagtcaagtgtgagtttacgttctacatt 32971201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 453
Target Start/End: Original strand, 51083 - 51134
Alignment:
Q  402 tggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaa 453  Q
    |||| |||||||||||||||||| |||||||||| |||||||||||| ||||    
T  51083 tggagagtcacacacttgattaaaagatgttaatctgtcaagtgtgacttaa 51134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 401 - 464
Target Start/End: Original strand, 10021811 - 10021874
Alignment:
Q  401 gtggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacatt 464  Q
    ||||||||||  ||||||||| || ||||||||||| |||||||||||||| || |||||||||    
T  10021811 gtggatagtcgaacacttgataaagagatgttaatgagtcaagtgtgagtttacgttctacatt 10021874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 300
Target Start/End: Complemental strand, 32264809 - 32264759
Alignment:
Q  250 ccaaaaatctccaactccttcaacaaactcatataaatatcatcaactcac 300  Q
    |||||||||||||| |||||||||||||||| |||| || || ||||||||    
T  32264809 ccaaaaatctccaagtccttcaacaaactcaaataattaccagcaactcac 32264759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 19817022 - 19816985
Alignment:
Q  245 attacccaaaaatctccaactccttcaacaaactcata 282  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  19817022 attacccaaaaatctcaaactcctttaacaaactcata 19816985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 334
Target Start/End: Original strand, 40057311 - 40057400
Alignment:
Q  245 attacccaaaaatctccaactccttcaacaaactcatataaatatcatcaactcactttattccctacactctaatagacaaaacacaca 334  Q
    |||| |||||||||||||||| ||||||||||||| || |  ||||| ||||||||  |||| || | ||||| | | ||||||||||||    
T  40057311 attatccaaaaatctccaacttcttcaacaaactcgtagatttatcaacaactcacactatttccaatactctcacaaacaaaacacaca 40057400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 9264817 - 9264857
Alignment:
Q  237 gtaaatttattacccaaaaatctccaactccttcaacaaac 277  Q
    ||||||| |||||||||| ||||| ||||||||||||||||    
T  9264817 gtaaattaattacccaaatatctcaaactccttcaacaaac 9264857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 407 - 557
Target Start/End: Complemental strand, 18290571 - 18290421
Alignment:
Q  407 agtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggt 506  Q
    ||||||||| |||||||  | ||||| ||||| ||| |||||||||||  | |||| |  ||| ||||||||||||| |||||||||||| |||||||      
T  18290571 agtcacacaattgattaggatatgttgatgtgacaaatgtgagttaacggtatacactggatggaagagtagattttaaacaacatataagtgagatgac 18290472  T
Q  507 ccaaatgtctaatgccttcaggttttttgtaaagatgtgatgtccatctca 557  Q
    | ||||   ||||| ||| ||||||| |||||||||||| |||| ||||||    
T  18290471 cgaaatacataatgtcttaaggttttatgtaaagatgtggtgtcaatctca 18290421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 453
Target Start/End: Complemental strand, 36837445 - 36837376
Alignment:
Q  384 gtcacatacttacagacgtggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaa 453  Q
    |||||||| |||||||||| || | ||| |||||||||||| |||||||||||||| |||||| ||||||    
T  36837445 gtcacataattacagacgtagagaatcaaacacttgattaagagatgttaatgtgttaagtgttagttaa 36837376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 418 - 559
Target Start/End: Complemental strand, 6678437 - 6678296
Alignment:
Q  418 tgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatgtcta 517  Q
    ||||||| |||||||  |||||||| | ||||||||  || | ||||  ||| || | |||||||| |||||||||||||||| |||||||| ||  | |    
T  6678437 tgattaacagatgttggtgtgtcaattatgagttaatgttttgcattggatggaaaaatagatttttaacaacatataaatgacatggtccatatagcaa 6678338  T
Q  518 atgccttcaggttttttgtaaagatgtgatgtccatctcatt 559  Q
    |||| || ||||||| ||| ||||||| ||||  ||||||||    
T  6678337 atgcattaaggttttgtgtgaagatgtaatgtaaatctcatt 6678296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 18289680 - 18289622
Alignment:
Q  24 taatgtgattatccaaccgagtttatgcttctccaaaagtccgaacattatgatgaact 82  Q
    |||||||||||||||||| |||||| ||| |  | ||||||| ||||||||||||||||    
T  18289680 taatgtgattatccaacctagtttacgctcccgcgaaagtcctaacattatgatgaact 18289622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 29913043 - 29913080
Alignment:
Q  245 attacccaaaaatctccaactccttcaacaaactcata 282  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  29913043 attacccaaatatctccaactcctttaacaaactcata 29913080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 504
Target Start/End: Complemental strand, 42079041 - 42078961
Alignment:
Q  426 agatgttaatgtgtcaagtgtgagttaaccttc--tacattacatgaaagagtagattttcaacaacatataaatgagatg 504  Q
    |||||||||||||||| ||||||||||| ||||  ||||||  ||| |||||||||| || | |||||| ||| |||||||    
T  42079041 agatgttaatgtgtcatgtgtgagttaaacttctatacatttgatgcaagagtagatattgagcaacatgtaagtgagatg 42078961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 453
Target Start/End: Original strand, 43989679 - 43989719
Alignment:
Q  413 acacttgattaatagatgttaatgtgtcaagtgtgagttaa 453  Q
    |||||| ||| | ||||||||||||||||||||||||||||    
T  43989679 acacttaattgagagatgttaatgtgtcaagtgtgagttaa 43989719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 414 - 542
Target Start/End: Original strand, 28963486 - 28963613
Alignment:
Q  414 cacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatg 513  Q
    ||||| ||||| |||||||||||||||||||| ||||| || ||||||||   ||| ||||| | |||||||||| ||||| ||||||||| ||||  |     
T  28963486 cacttcattaagagatgttaatgtgtcaagtgcgagttgacattctacatcggatggaagagaaaattttcaacagcatat-aatgagatgttccatgta 28963584  T
Q  514 tctaatgccttcaggttttttgtaaagat 542  Q
    || |||||||| ||||||| ||| |||||    
T  28963585 tccaatgccttaaggttttgtgttaagat 28963613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 245 - 334
Target Start/End: Complemental strand, 7843913 - 7843824
Alignment:
Q  245 attacccaaaaatctccaactccttcaacaaactcatataaatatcatcaactcactttattccctacactctaatagacaaaacacaca 334  Q
    |||| |||||||||||||||| ||||||||||||| || |  ||||| ||||||||  |||| |||| ||||| | | ||||||||||||    
T  7843913 attatccaaaaatctccaacttcttcaacaaactcgtagatttatcaacaactcacactatttcctatactctcacaaacaaaacacaca 7843824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 453
Target Start/End: Original strand, 3982724 - 3982759
Alignment:
Q  418 tgattaatagatgttaatgtgtcaagtgtgagttaa 453  Q
    ||||||| ||||||||||||||||||||||||||||    
T  3982724 tgattaagagatgttaatgtgtcaagtgtgagttaa 3982759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 285
Target Start/End: Complemental strand, 17001558 - 17001519
Alignment:
Q  246 ttacccaaaaatctccaactccttcaacaaactcatataa 285  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  17001558 ttacccaaaaatcttcaaatccttcaacaaactcatataa 17001519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 19103112 - 19103057
Alignment:
Q  245 attacccaaaaatctccaactccttcaacaaactcatataaatatcatcaactcac 300  Q
    |||| |||||||||| |||||||||||||||||||||| |  ||||| ||||||||    
T  19103112 attatccaaaaatcttcaactccttcaacaaactcatagatttatcaacaactcac 19103057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 285
Target Start/End: Original strand, 34161702 - 34161741
Alignment:
Q  246 ttacccaaaaatctccaactccttcaacaaactcatataa 285  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  34161702 ttacccaaaaatcttcaaatccttcaacaaactcatataa 34161741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 453
Target Start/End: Original strand, 47783153 - 47783183
Alignment:
Q  423 aatagatgttaatgtgtcaagtgtgagttaa 453  Q
    |||||||||||||||||||||||||||||||    
T  47783153 aatagatgttaatgtgtcaagtgtgagttaa 47783183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 17006112 - 17006075
Alignment:
Q  245 attacccaaaaatctccaactccttcaacaaactcata 282  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  17006112 attacccaaaaatctctaactcctttaacaaactcata 17006075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 496
Target Start/End: Complemental strand, 31089618 - 31089550
Alignment:
Q  428 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataa 496  Q
    ||||||||||||||  ||| ||||||  |||||||||  ||||||||||| ||||| | ||||||||||    
T  31089618 atgttaatgtgtcatatgtaagttaaatttctacattggatgaaagagtatattttgagcaacatataa 31089550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 495
Target Start/End: Original strand, 49882679 - 49882787
Alignment:
Q  387 acatacttacagacgtggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaa 486  Q
    ||||| |||| ||||| ||||| |||||| |||||||  | ||||||||||||||| |  |||||||| || |||| |  ||| || |||||||||| |     
T  49882679 acataattacggacgtagatagacacacaattgattaggatatgttaatgtgtcaaatacgagttaacgttatacaatggatggaatagtagattttgag 49882778  T
Q  487 caacatata 495  Q
    |||||||||    
T  49882779 caacatata 49882787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2049 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold2049
Description:

Target: scaffold2049; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 545
Target Start/End: Complemental strand, 342 - 212
Alignment:
Q  414 cacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatg 513  Q
    ||||| ||||| ||||||||||||| |||||||||||| || ||||||||   ||| ||||| | |||||||||||||||| ||||||||| || |  |     
T  342 cacttcattaagagatgttaatgtgccaagtgtgagttgacattctacatcggatggaagagaaaattttcaacaacatat-aatgagatgttcgatgta 244  T
Q  514 tctaatgccttcaggttttttgtaaagatgtg 545  Q
    || |||||||| ||||||| ||| || |||||    
T  243 tccaatgccttaaggttttgtgttaaaatgtg 212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 545
Target Start/End: Complemental strand, 94844 - 94714
Alignment:
Q  414 cacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatg 513  Q
    ||||| ||||| ||||||||||||| |||||||||||| || ||||||||   ||| ||||| | |||||||||||||||| ||||||||| || |  |     
T  94844 cacttcattaagagatgttaatgtgccaagtgtgagttgacattctacatcggatggaagagaaaattttcaacaacatat-aatgagatgttcgatgta 94746  T
Q  514 tctaatgccttcaggttttttgtaaagatgtg 545  Q
    || |||||||| ||||||| ||| || |||||    
T  94745 tccaatgccttaaggttttgtgttaaaatgtg 94714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 428 - 555
Target Start/End: Complemental strand, 20106738 - 20106611
Alignment:
Q  428 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatgtctaatgccttcag 527  Q
    ||||||||||||||| ||||||||||| || ||||||  ||| ||||||||||||| || || |||||| |||||||  | ||||   ||||| ||| ||    
T  20106738 atgttaatgtgtcaaatgtgagttaacgttatacattggatggaagagtagattttgaataaaatataagtgagatgaccaaaatacataatgtcttaag 20106639  T
Q  528 gttttttgtaaagatgtgatgtccatct 555  Q
    ||||| |||||| ||||| |||| ||||    
T  20106638 gttttatgtaaatatgtggtgtcaatct 20106611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 428 - 496
Target Start/End: Complemental strand, 31963777 - 31963709
Alignment:
Q  428 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataa 496  Q
    ||||||||||||||| || |||||||| || ||||||| ||| ||||||||||||| | ||||||||||    
T  31963777 atgttaatgtgtcaaatgcgagttaactttatacattagatggaagagtagattttgagcaacatataa 31963709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 504
Target Start/End: Complemental strand, 5788171 - 5788097
Alignment:
Q  430 gttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 504  Q
    |||||||||||| |||||| |||| ||||||||||| ||| ||||||| || || | |||||||||| |||||||    
T  5788171 gttaatgtgtcacgtgtgatttaaacttctacattatatgtaagagtatatattgagcaacatataagtgagatg 5788097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 424 - 496
Target Start/End: Original strand, 14905101 - 14905171
Alignment:
Q  424 atagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataa 496  Q
    ||||||||| ||||||||||||||||||||  || || |||  ||||||||||||||||  ||||||||||||    
T  14905101 atagatgttgatgtgtcaagtgtgagttaaagttttatattggatgaaagagtagattt--aacaacatataa 14905171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 415 - 504
Target Start/End: Complemental strand, 31965935 - 31965846
Alignment:
Q  415 acttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 504  Q
    |||||| ||| ||| ||||||||||||||| ||||||||  ||||| | || ||  ||||||||||||| || ||||||||| |||||||    
T  31965935 acttgaataagagaagttaatgtgtcaagtatgagttaaaattctatagtagatagaagagtagattttgaataacatataagtgagatg 31965846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 453
Target Start/End: Complemental strand, 17681003 - 17680963
Alignment:
Q  413 acacttgattaatagatgttaatgtgtcaagtgtgagttaa 453  Q
    |||||||||||| |||||||||||| |||||||||||||||    
T  17681003 acacttgattaaaagatgttaatgtatcaagtgtgagttaa 17680963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 504
Target Start/End: Complemental strand, 41754081 - 41754007
Alignment:
Q  430 gttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 504  Q
    |||||||||||| |||| | |||| ||| ||||||| ||| |||||||||| || | |||||||||| |||||||    
T  41754081 gttaatgtgtcatgtgtcatttaaacttatacattatatgtaagagtagatattgagcaacatataagtgagatg 41754007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 504
Target Start/End: Original strand, 45661109 - 45661183
Alignment:
Q  430 gttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 504  Q
    ||||||||| || ||||||||||||||| ||||||  ||| ||||||| || || | |||||||||| |||||||    
T  45661109 gttaatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatg 45661183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 14908883 - 14908960
Alignment:
Q  5 tttgtggttgttcatagcttaatgtgattatccaaccgagtttatgcttctccaaaagtccgaacattatgatgaact 82  Q
    |||||||||| || ||||||||||||||||||||||  | ||||  ||||   |||||||  ||||||||||||||||    
T  14908883 tttgtggttgatcttagcttaatgtgattatccaactcattttaaccttccaaaaaagtcacaacattatgatgaact 14908960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 249 - 317
Target Start/End: Complemental strand, 5788478 - 5788410
Alignment:
Q  249 cccaaaaatctccaactccttcaacaaactcatataaatatcatcaactcactttattccctacactct 317  Q
    ||||| ||| |||||||||||||||||| ||||| || || || ||| ||| ||||||||||| |||||    
T  5788478 cccaataatttccaactccttcaacaaattcataaaattaccagcaaatcattttattccctatactct 5788410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 462
Target Start/End: Original strand, 36720076 - 36720112
Alignment:
Q  426 agatgttaatgtgtcaagtgtgagttaaccttctaca 462  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36720076 agatgttaatgtgtcaagtgtgagttaaaattctaca 36720112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 277
Target Start/End: Complemental strand, 45055217 - 45055177
Alignment:
Q  237 gtaaatttattacccaaaaatctccaactccttcaacaaac 277  Q
    ||||||| |||||||||| ||||| ||||||||||||||||    
T  45055217 gtaaattaattacccaaatatctcaaactccttcaacaaac 45055177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 45660634 - 45660674
Alignment:
Q  237 gtaaatttattacccaaaaatctccaactccttcaacaaac 277  Q
    ||||||| |||||||||| ||||| ||||||||||||||||    
T  45660634 gtaaattaattacccaaatatctcaaactccttcaacaaac 45660674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 504
Target Start/End: Original strand, 37032 - 37121
Alignment:
Q  415 acttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 504  Q
    |||||| ||| ||||||||||||||||||||||||||||  ||||| | |  ||  ||||||||||||| || ||||||||| |||||||    
T  37032 acttgaataagagatgttaatgtgtcaagtgtgagttaaaattctatagtggatagaagagtagattttgaataacatataagtgagatg 37121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 504
Target Start/End: Original strand, 1350 - 1449
Alignment:
Q  403 ggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgaga 502  Q
    ||||| ||||||| |||||||| ||||  ||||||||||||||||||| ||  ||| |||||  ||| |||| |||||||| || || |||||| |||||    
T  1350 ggataatcacacatttgattaagagat--taatgtgtcaagtgtgagtgaatgttcaacattgaatggaagaatagattttgaataatatataagtgaga 1447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 428 - 559
Target Start/End: Complemental strand, 7668 - 7537
Alignment:
Q  428 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatggtccaaatgtctaatgccttcag 527  Q
    ||||||||||||||| || |||||||| || ||||||  ||| ||||||||||||| | |||||||||| | |||||  | ||||  |||||| ||| ||    
T  7668 atgttaatgtgtcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatataagttagatgaccaaaatacctaatgtcttaag 7569  T
Q  528 gttttttgtaaagatgtgatgtccatctcatt 559  Q
    ||||  ||| ||| |||| |||| ||||||||    
T  7568 gtttcatgtgaagttgtggtgtcaatctcatt 7537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 452
Target Start/End: Original strand, 18270 - 18337
Alignment:
Q  385 tcacatacttacagacgtggatagtcacacacttgattaatagatgttaatgtgtcaagtgtgagtta 452  Q
    ||||||| ||||| | |||||||||  ||||||||||||| | ||||||||||||||||||| |||||    
T  18270 tcacataattacaaatgtggatagtagcacacttgattaagatatgttaatgtgtcaagtgttagtta 18337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 504
Target Start/End: Complemental strand, 32544 - 32470
Alignment:
Q  430 gttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 504  Q
    |||||||||||| |||||| |||| ||||||||||| ||| ||||||| || || | |||||||||| |||||||    
T  32544 gttaatgtgtcacgtgtgatttaaacttctacattatatgtaagagtatatattgagcaacatataagtgagatg 32470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 249 - 317
Target Start/End: Complemental strand, 32851 - 32783
Alignment:
Q  249 cccaaaaatctccaactccttcaacaaactcatataaatatcatcaactcactttattccctacactct 317  Q
    ||||| ||| |||||||||||||||||| ||||| || || || ||| ||| ||||||||||| |||||    
T  32851 cccaataatttccaactccttcaacaaattcataaaattaccagcaaatcattttattccctatactct 32783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 463
Target Start/End: Original strand, 43666 - 43712
Alignment:
Q  417 ttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacat 463  Q
    |||||||| | ||||||||||||||||||||||||||| ||||||||    
T  43666 ttgattaaaatatgttaatgtgtcaagtgtgagttaacgttctacat 43712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 501
Target Start/End: Original strand, 15272 - 15343
Alignment:
Q  430 gttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgag 501  Q
    ||||||||||||||||||| |||| ||| ||||||| ||| | |||||||| || | |||||||||| ||||    
T  15272 gttaatgtgtcaagtgtgatttaaacttttacattatatgtatgagtagatattgagcaacatataagtgag 15343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 3686 - 3744
Alignment:
Q  238 taaatttattacccaaaaatctccaactccttcaacaaactcatataaatatcatcaac 296  Q
    |||||| |||| || |||||| ||||||||||||||||||| | |||| ||||||||||    
T  3686 taaattaattatcctaaaatccccaactccttcaacaaactaaaataattatcatcaac 3744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 41046 - 41080
Alignment:
Q  245 attacccaaaaatctccaactccttcaacaaactc 279  Q
    ||||||||||||||||||||||||| |||||||||    
T  41046 attacccaaaaatctccaactcctttaacaaactc 41080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 504
Target Start/End: Complemental strand, 18547 - 18458
Alignment:
Q  415 acttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 504  Q
    |||||| ||| ||||||||||  ||||||||||||||||  ||||| | |  ||  ||||||||||||| || ||||||||| |||||||    
T  18547 acttgaataagagatgttaattagtcaagtgtgagttaaaattctatagtggatagaagagtagattttgaataacatataagtgagatg 18458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1345 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 453
Target Start/End: Original strand, 1845 - 1885
Alignment:
Q  413 acacttgattaatagatgttaatgtgtcaagtgtgagttaa 453  Q
    |||||| ||| | ||||||||||||||||||||||||||||    
T  1845 acacttaattgagagatgttaatgtgtcaagtgtgagttaa 1885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 504
Target Start/End: Complemental strand, 29245 - 29169
Alignment:
Q  428 atgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaacaacatataaatgagatg 504  Q
    |||||||||| |||| ||||||||||  ||| |||||  ||| || ||||||| || |||||||||||| |||||||    
T  29245 atgttaatgtatcaaatgtgagttaaagttccacattggatgcaaaagtagatgttaaacaacatataagtgagatg 29169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University