View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8893_low_12 (Length: 554)
Name: NF8893_low_12
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8893_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 14 - 535
Target Start/End: Original strand, 43602615 - 43603136
Alignment:
| Q |
14 |
atggacatcaaaagcgagtgcaattctagcaggaagaccaaagaattgggaagattttgctatgatatcgagcacacaaactctctatcagcagctacaa |
113 |
Q |
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| T |
43602615 |
atggatatcaaaagcgagtgcaattctagcaggaagaccaaagaattgggaagattttgctatgaaatcgagcacacaaactctctatcagcaactacaa |
43602714 |
T |
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| Q |
114 |
gatcaagtaaatttagatggaaaatgttgtggatgaagctcaagaaagagaagaagaagctacttgagtctacatcatcacctttgcagcaggatcctta |
213 |
Q |
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| T |
43602715 |
gatcaagtaaatttagatggaaaatgttgtggatgaagctcaagaaagagaagaagaagctacttgagtctacatcatcacctttgcagcaggatcctta |
43602814 |
T |
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| Q |
214 |
tgatcctttcacttattctcagaattttgaacaagggacagtgtttgatgaaccagattacctgtctagatctttctctgttcggtttgccgatccttgt |
313 |
Q |
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| T |
43602815 |
tgatcctttcacttattctcagaattttgaacaagggacagtgtttgatgaaccagattacctgtctagatctttctctgttcggtttgccgatccttgt |
43602914 |
T |
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| Q |
314 |
aaatttattaattatcaaaagaaatgagtagtttaaggcaaagctagggaaatttgagactttatgttagcaatgtttgcatctctttttcttcatatta |
413 |
Q |
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| T |
43602915 |
aaatttattaattatcaaaagaaatgagtagtttaaggcaaagctagggaaatttgagactttatgttagcaatgtttgcatctctttttcttcatatta |
43603014 |
T |
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| Q |
414 |
cttagcctatagtctgattcttctttttgtttatgcaatgtttatcaccggttatatgcatatttttaatttgtaatataagtgagaccattgcacggtg |
513 |
Q |
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| T |
43603015 |
cttagcctatagtctgattcttctttttgtttatgcaatgtttatcaccggttatatgcatatttttaatttgtaatataagtgagaccattgcacggtg |
43603114 |
T |
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| Q |
514 |
gagttcaattttattgatggag |
535 |
Q |
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| T |
43603115 |
gagttcaattttattgatggag |
43603136 |
T |
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