View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8893_low_17 (Length: 475)
Name: NF8893_low_17
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8893_low_17 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0428 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 17 - 475
Target Start/End: Original strand, 895043 - 895501
Alignment:
| Q |
17 |
atcaggaatatctttgatatggtaagggactatactacctggaacattcacagtttcataagctgattctaagaactctatttccgaggaaatagagtcg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
895043 |
atcaggaatatctttgatatggtaagggactatactacctggaacattcacagtttcataagctgactctaagaactctatttccgaggaaatagagtcg |
895142 |
T |
|
| Q |
117 |
tcgagattcggaagagtgagataaaatgatgttggaacagctcccgaggcatagaaaaggtaagaagacaagttgaattgtttagcaacttcatatgcat |
216 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
895143 |
tcgagattcagaagagtgagataaaatgatgttggaacagctcctgaggcatagaaaaggtaagaagacaagttaaattgtttggcaacttcatatgcat |
895242 |
T |
|
| Q |
217 |
ctgttgaaaatatactgaagattaaagaaacaaggtaagttttggaaatgagtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
895243 |
ctgttgaaaatatactgaagattaaagaaacaaggttagttttggaaatgagtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgag |
895342 |
T |
|
| Q |
317 |
tttcatttgtgctgcaggatcatggctttgttgaatattttttacttgaggaagaagaatgaagtctatgtttggtggaagattgttcaagacttgttgc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
895343 |
tttcatttgtgctgcaggatcatggctttgttgaatattttttacttgaggaagaagaatgaagtctatgtttggtggaagattgttcaagacttgttgc |
895442 |
T |
|
| Q |
417 |
attgaaggagtaaaaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtg |
475 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
895443 |
attgaaggagtaagaggagaaagtgttggaatgatgaatgtgacaatgaattcattgtg |
895501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 21 - 475
Target Start/End: Complemental strand, 905596 - 905139
Alignment:
| Q |
21 |
ggaatatctttgatatggtaagggactatactacctggaacattcacagtttcataagctgattctaagaactctatttccgaggaaatagagtcgtcga |
120 |
Q |
| |
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||||||||||||||||| | |||| | || |||||||| |||||||||||||||||||||||||||||| ||| ||| ||||||| ||||||||||| |
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| T |
905596 |
ggaatatctttgatatgaaatgggatgacacaacctggaatattcacagtttcataagctgattctaagaattctgcttcagaggaaacagagtcgtcga |
905497 |
T |
|
| Q |
121 |
gattcggaagagtgagataaaatgatgttggaacagctcccgaggcatagaaaaggtaagaagacaagttgaattgtttagcaacttcatatgcatctgt |
220 |
Q |
| |
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||||||||||||||||| | ||||| || || ||| |||||||||||||||||||||||||| || |||||||||||||||||||||| |||||| || |
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| T |
905496 |
gattcggaagagtgagaaagaatgacaatgaaagagcacccgaggcatagaaaaggtaagaagataaattgaattgtttagcaacttcatgtgcatcggt |
905397 |
T |
|
| Q |
221 |
tgaaaatatactgaagattaaagaaacaaggtaagttttggaaatgagtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttc |
320 |
Q |
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||| |||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
905396 |
tgagaatagaccaaagattaaagaaacaaggttagttttggaaatgagtgattttacttcttcttgtagaaatggaatagaatgtttcacaatgagtttc |
905297 |
T |
|
| Q |
321 |
atttgtgctgcaggatc---atggctttgttgaatattttttacttgaggaagaagaatgaagtctatgtttggtggaagattgttcaagacttgttgca |
417 |
Q |
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||||||| |||||| || || | | | ||| | ||||||||||||||||| |||||| ||||||||||| |||||| |||||||||||||||||| |
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| T |
905296 |
atttgtgttgcaggttcaagattaatctctggaaggtgttttacttgaggaagaacaatgaattctatgtttgggggaagagtgttcaagacttgttgca |
905197 |
T |
|
| Q |
418 |
ttgaaggagtaaaaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtg |
475 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
905196 |
ttgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtg |
905139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 152 - 459
Target Start/End: Original strand, 8295121 - 8295434
Alignment:
| Q |
152 |
aacagctcccgaggcatagaaaaggtaagaagacaagttgaattgtttagcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaagg |
251 |
Q |
| |
|
||||||||| |||| | |||||||||| || | | |||||| ||||| ||||| |||| |||||| |||||||| || ||||| | ||||| ||| ||| |
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| T |
8295121 |
aacagctcctgaggaaaagaaaaggtatgataaaaggttgaaatgtttcgcaacatcatgtgcatcggttgaaaacatgctgaaaactaaagcaactagg |
8295220 |
T |
|
| Q |
252 |
taagttttggaaatgagtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtgctgcaggatcatggctttgttgaa |
351 |
Q |
| |
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|||||| |||| ||||||||| ||||||| | ||||||||||||||| |||||||| ||||||||||| |||| |||||||||| | | ||| ||| |
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| T |
8295221 |
cgagtttttgaaaggagtgattttacttcttcataaagaaatggaatagagtgtttcactatgagtttcatctgtgttgcaggatcaagattatgtggaa |
8295320 |
T |
|
| Q |
352 |
------tattttttacttgaggaagaagaatgaagtctatgtttggtggaagattgttcaagacttgttgcattgaaggagtaaaaggacaaagtgttgg |
445 |
Q |
| |
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| | || ||||| ||||||| |||||||| ||||||||||||||| ||||||||| |||||| |||||||| | |||| |||||| || |
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| T |
8295321 |
ggtcttcaatgttgacttggggaagaacaatgaagttcatgtttggtggaagagtgttcaagatggattgcatggaaggagttagtggaccaagtgtggg |
8295420 |
T |
|
| Q |
446 |
aatgatgaatgtga |
459 |
Q |
| |
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||||| |||||||| |
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| T |
8295421 |
aatgaggaatgtga |
8295434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 152 - 327
Target Start/End: Complemental strand, 33256634 - 33256459
Alignment:
| Q |
152 |
aacagctcccgaggcatagaaaaggtaagaagacaagttgaattgtttagcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaagg |
251 |
Q |
| |
|
||||||||| || | | ||||||||||||| | | |||||| |||||||| || || | |||||| |||||||| || ||| | | ||||| ||||||| |
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| T |
33256634 |
aacagctcctgaagaaaagaaaaggtaagacaaaaggttgaaatgtttagctacatcgtgtgcatcggttgaaaacatgctgcaaactaaagcaacaagg |
33256535 |
T |
|
| Q |
252 |
taagttttggaaatgagtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtg |
327 |
Q |
| |
|
| |||||| |||| |||||||| ||||||| ||||||||||||||||| |||||||| |||||||||||||||| |
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|
| T |
33256534 |
ttagtttttgaaagaagtgattttacttcttcatgaagaaatggaatagagtgtttcactatgagtttcatttgtg |
33256459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 475
Target Start/End: Complemental strand, 6440567 - 6440492
Alignment:
| Q |
400 |
tgttcaagacttgttgcattgaaggagtaaaaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtg |
475 |
Q |
| |
|
||||||| ||||| | |||||||||||| | | ||| || |||||||| || ||||||||||||||| |||||||| |
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|
| T |
6440567 |
tgttcaatacttgctacattgaaggagtgagacgaccaaatgttggaacgaggaatgtgacaatgaactcattgtg |
6440492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 459
Target Start/End: Complemental strand, 33256420 - 33256321
Alignment:
| Q |
360 |
acttgaggaagaagaatgaagtctatgtttggtggaagattgttcaagacttgttgcattgaaggagtaaaaggacaaagtgttggaatgatgaatgtga |
459 |
Q |
| |
|
||||| ||||||| | |||||| |||||||||||||| ||||||||| | |||||| |||||||| | |||| |||||| ||||||| |||||||| |
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|
| T |
33256420 |
acttggggaagaacagtgaagttcatgtttggtggaagtgtgttcaagattgattgcatggaaggagttagtggaccaagtgtgggaatgaggaatgtga |
33256321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 152 - 327
Target Start/End: Complemental strand, 752 - 577
Alignment:
| Q |
152 |
aacagctcccgaggcatagaaaaggtaagaagacaagttgaattgtttagcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaagg |
251 |
Q |
| |
|
||||||||| || | | ||||||||||||| | | |||||| |||||||| || || | |||||| |||||||| || ||| | | ||||| ||||||| |
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|
| T |
752 |
aacagctcctgaagaaaagaaaaggtaagacaaaaggttgaaatgtttagctacatcgtgtgcatcggttgaaaacatgctgcaaactaaagcaacaagg |
653 |
T |
|
| Q |
252 |
taagttttggaaatgagtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtg |
327 |
Q |
| |
|
| |||||| |||| |||||||| ||||||| ||||||||||||||||| |||||||| |||||||||||||||| |
|
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| T |
652 |
ttagtttttgaaagaagtgattttacttcttcatgaagaaatggaatagagtgtttcactatgagtttcatttgtg |
577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 459
Target Start/End: Complemental strand, 538 - 439
Alignment:
| Q |
360 |
acttgaggaagaagaatgaagtctatgtttggtggaagattgttcaagacttgttgcattgaaggagtaaaaggacaaagtgttggaatgatgaatgtga |
459 |
Q |
| |
|
||||| ||||||| | |||||| |||||||||||||| ||||||||| | |||||| |||||||| | |||| |||||| ||||||| |||||||| |
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|
| T |
538 |
acttggggaagaacagtgaagttcatgtttggtggaagtgtgttcaagattgattgcatggaaggagttagtggaccaagtgtgggaatgaggaatgtga |
439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 475
Target Start/End: Original strand, 34765242 - 34765317
Alignment:
| Q |
400 |
tgttcaagacttgttgcattgaaggagtaaaaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtg |
475 |
Q |
| |
|
|||||||| ||| ||||||||| |||| | |||| ||||||||||| || ||||||||||||||| |||||||| |
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|
| T |
34765242 |
tgttcaaggtttgatgcattgaaagagtgagaggatcaagtgttggaacgaggaatgtgacaatgaactcattgtg |
34765317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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