View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8893_low_23 (Length: 457)
Name: NF8893_low_23
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8893_low_23 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr1 (7 HSPs) |
| |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 2 - 457
Target Start/End: Complemental strand, 3882788 - 3882333
Alignment:
| Q |
2 |
tgagatggacatcatgaatatcaataacagggactaaagagccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctgg |
101 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3882788 |
tgagctggacatcatgaatatcaataacagggactaaagagccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctgg |
3882689 |
T |
|
| Q |
102 |
cctccaagagtaacctagtttgaatatatctttggcacggatgattgatgaccaagaaggtgagctatcggcggtagcagacacatggaggatgttgtgt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
3882688 |
cctccaagagtaacctagtttgaatatatctttggcacggatgattgatgaccaagaaggtgagctattggcggtagcagacgcatggaggatgttgtgt |
3882589 |
T |
|
| Q |
202 |
cctactaaatatttagcagagagaatatccacccaaagtttatttgatgactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgc |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3882588 |
cctactaaatatttagcagagagaatatccacccaaagtttatttgatgactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgc |
3882489 |
T |
|
| Q |
302 |
gtgccgttctaatacccaagcccccataactcttaggggttgtaattttcttccaacttaccaagtgaatacccttgttgctagtgccacgccaaataaa |
401 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3882488 |
gagccgttctaatacccaagcccccataactcttaggggttgtaattttcttccaacttaccaagtgaatacctttgttgctagtgccacgccaaataaa |
3882389 |
T |
|
| Q |
402 |
attgcgcgtggtttgatcaatggcatcgcatatgttttgtggaagccagttaattt |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3882388 |
attgcgcgtggtttgatcaatggcatcgcatatgttttgtggaagccagttaattt |
3882333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 2 - 457
Target Start/End: Complemental strand, 50452968 - 50452513
Alignment:
| Q |
2 |
tgagatggacatcatgaatatcaataacagggactaaagagccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctgg |
101 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50452968 |
tgagctggacatcatgaatatcaataacagggactaaagaaccaaggggcccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctgg |
50452869 |
T |
|
| Q |
102 |
cctccaagagtaacctagtttgaatatatctttggcacggatgattgatgaccaagaaggtgagctatcggcggtagcagacacatggaggatgttgtgt |
201 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| || ||| |||||| ||||||||| |||||| |
|
|
| T |
50452868 |
cctccaagagtaaccaagtttgaagatatctttggcacggatgatagatgaccaagaaggtgagctattggtggtggcagacgcatggaggacgttgtgc |
50452769 |
T |
|
| Q |
202 |
cctactaaatatttagcagagagaatatccacccaaagtttatttgatgactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgc |
301 |
Q |
| |
|
|||||| ||||||| |||||||||| || |||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
50452768 |
cctactgaatattttgcagagagaagattcacccatagtttatttgatgactgtaccatatcccaaactaactttccaagaagacaagtgttagcgtttc |
50452669 |
T |
|
| Q |
302 |
gtgccgttctaatacccaagcccccataactcttaggggttgtaattttcttccaacttaccaagtgaatacccttgttgctagtgccacgccaaataaa |
401 |
Q |
| |
|
| ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
50452668 |
gagccgttctaatacccaaccccccataacgctttggggttgtaattttcttccaacttaccaagtgaacacccttgttgctagtgccacgccaaataaa |
50452569 |
T |
|
| Q |
402 |
attgcgcgtggtttgatcaatggcatcgcatatgttttgtggaagccagttaattt |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50452568 |
gttgcgcgtggtttgatcaatggcatcgcatatgttttgtggaagccagttaattt |
50452513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 250 - 457
Target Start/End: Original strand, 10103006 - 10103212
Alignment:
| Q |
250 |
gactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgcgtgccgttctaatacccaagcccccataactcttaggggttgtaattt |
349 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||||||| || ||||||| |||| |||| || |||| |
|
|
| T |
10103006 |
gactgcaccatatcccaaactaactttccaagaagacaagtgttagagtttcgggccgttctaatacccaaaccaccataacgctta-gggtagtgattt |
10103104 |
T |
|
| Q |
350 |
tcttccaacttaccaagtgaatacccttgttgctagtgccacgccaaataaaattgcgcgtggtttgatcaatggcatcgcatatgttttgtggaagcca |
449 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||| || ||||||||||||| || |||||||| || || ||||| |
|
|
| T |
10103105 |
tcttccaacttaccaagtgaacacccttgttactagaaccacgccaaataaagttgcgtgtagtttgatcaatggagtcacatatgttctgagggagcca |
10103204 |
T |
|
| Q |
450 |
gttaattt |
457 |
Q |
| |
|
||||||| |
|
|
| T |
10103205 |
attaattt |
10103212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 210 - 455
Target Start/End: Complemental strand, 43299198 - 43298953
Alignment:
| Q |
210 |
atatttagcagagagaatatccacccaaagtttatttgatgactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgcgtgccgtt |
309 |
Q |
| |
|
|||||||| |||||||| | |||||| | |||||||| ||||||||||| |||||||||||||||||||| || ||||| ||| | || || || ||| |
|
|
| T |
43299198 |
atatttagtagagagaaggttcacccataatttatttgtagactgaaccatgtcccaaactaactttccaaggaggcaagtattaacatttcgggctgtt |
43299099 |
T |
|
| Q |
310 |
ctaatacccaagcccccataactcttaggggttgtaattttcttccaacttaccaagtgaatacccttgttgctagtgccacgccaaataaaattgcgcg |
409 |
Q |
| |
|
|||||||||||||| || ||| || ||| | ||||||||||||||||||||||| |||| ||||||||| |||| ||| |||||||||| || || | |
|
|
| T |
43299098 |
ctaatacccaagccaccgaaacgttttgggctagtaattttcttccaacttaccaaatgaacacccttgttactaggaccatgccaaataaagttccggg |
43298999 |
T |
|
| Q |
410 |
tggtttgatcaatggcatcgcatatgttttgtggaagccagttaat |
455 |
Q |
| |
|
| ||||||||||| | ||| || |||||||| || ||||||||||| |
|
|
| T |
43298998 |
ttgtttgatcaatagaatcacaaatgttttgcgggagccagttaat |
43298953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 211 - 440
Target Start/End: Original strand, 5192439 - 5192668
Alignment:
| Q |
211 |
tatttagcagagagaatatccacccaaagtttatttgatgactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgcgtgccgttc |
310 |
Q |
| |
|
||||||| |||||||| | |||||| | |||||||| ||||||||||| |||||||||||||||| ||| |||||||| || || || || | |||| |
|
|
| T |
5192439 |
tatttagtagagagaaggttcacccataatttatttgtggactgaaccatgtcccaaactaactttcaaaggagacaagtatttgcatttcgggttgttc |
5192538 |
T |
|
| Q |
311 |
taatacccaagcccccataactcttaggggttgtaattttcttccaacttaccaagtgaatacccttgttgctagtgccacgccaaataaaattgcgcgt |
410 |
Q |
| |
|
|||||| ||||| ||| ||| ||||||| | ||||||| |||||||||||||||||||| |||||| || |||| ||||||||||||||||| || || |
|
|
| T |
5192539 |
taatactcaagctaccaaaacgcttagggctagtaatttccttccaacttaccaagtgaacaccctttttactagaaccacgccaaataaaattacgggt |
5192638 |
T |
|
| Q |
411 |
ggtttgatcaatggcatcgcatatgttttg |
440 |
Q |
| |
|
||||||||||| | ||| || |||||||| |
|
|
| T |
5192639 |
tgtttgatcaatagaatcacaaatgttttg |
5192668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 211 - 449
Target Start/End: Complemental strand, 32891276 - 32891038
Alignment:
| Q |
211 |
tatttagcagagagaatatccacccaaagtttatttgatgactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgcgtgccgttc |
310 |
Q |
| |
|
||||||| |||||||| || |||||| | |||||| |||||| ||||| ||||||| |||||| ||||| |||||||| ||||| || | || ||||| |
|
|
| T |
32891276 |
tatttagtagagagaagattcacccataacttattttttgactggaccatgtcccaaattaacttcccaagaagacaagtattagcattccttgtcgttc |
32891177 |
T |
|
| Q |
311 |
taatacccaagcccccataactcttaggggttgtaattttcttccaacttaccaagtgaatacccttgttgctagtgccacgccaaataaaattgcgcgt |
410 |
Q |
| |
|
| ||||||||||| ||| || ||||| || |||| |||||||||| ||||||| |||||||||||||| |||||||| |||||||||||||| | || |
|
|
| T |
32891176 |
tgatacccaagccaccaagacgtttaggagtagtaactttcttccaatttaccaaatgaatacccttgttactagtgcctcgccaaataaaattccttgt |
32891077 |
T |
|
| Q |
411 |
ggtttgatcaatggcatcgcatatgttttgtggaagcca |
449 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
32891076 |
tgtttggtcaatactttcgcatatgttttgaggaagcca |
32891038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 449
Target Start/End: Original strand, 31324283 - 31324475
Alignment:
| Q |
256 |
accatatcccaaactaactttccaagcagacaagtgttagcgttgcgtgccgttctaatacccaagcccccataactcttaggggttgtaattttcttcc |
355 |
Q |
| |
|
||||| |||||||||| ||||||||| |||||||| || || || | |||||||| || || ||||| ||| || |||| | || ||||||||||||| |
|
|
| T |
31324283 |
accatgtcccaaactagctttccaaggagacaagtattggcattcctagccgttctgat-cctaagccaccaagacgcttatgagtagtaattttcttcc |
31324381 |
T |
|
| Q |
356 |
aacttaccaagtgaatacccttgttgctagtgccacgccaaataaaattgcgcgtggtttgatcaatggcatcgcatatgttttgtggaagcca |
449 |
Q |
| |
|
|| | |||| ||||||||||||||| |||| ||||||||||| || || | || ||||||||||| |||||| || ||||| |||||||| |
|
|
| T |
31324382 |
aattaaccaggtgaatacccttgttattagtaccacgccaaatgaagttttgtgttgtttgatcaatactatcgcaaatattttgaggaagcca |
31324475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 165
Target Start/End: Original strand, 10102799 - 10102921
Alignment:
| Q |
43 |
ccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctggcctccaagagtaacctagtttgaatatatctttggcacgga |
142 |
Q |
| |
|
|||||| |||||||| |||||||||| | |||||||| ||||| ||||||| |||| | |||| | ||||| |||||| |||||||||||||| | |
|
|
| T |
10102799 |
ccaaggaggccatggggacaccaattgttgaaccaaaaggaggattaacccgagcctgcgcgccaataataaccatttttgaaaatatctttggcacgaa |
10102898 |
T |
|
| Q |
143 |
tgattgatgaccaagaaggtgag |
165 |
Q |
| |
|
|||| |||| |||||| |||||| |
|
|
| T |
10102899 |
tgatagatgcccaagagggtgag |
10102921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 13 - 457
Target Start/End: Original strand, 24892927 - 24893371
Alignment:
| Q |
13 |
tcatgaatatcaataacagggactaaagagccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctggcctccaagagt |
112 |
Q |
| |
|
|||||||||||||||| ||||| | || |||||| | |||||| |||||||||| ||||||||||| ||||| ||||| || || ||||||||||| | |
|
|
| T |
24892927 |
tcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaattgctaaaccaaaacgaggaggaaccggagcccggcctccaagaat |
24893026 |
T |
|
| Q |
113 |
aacctagtttgaatatatctttggcacggatgattgatgaccaagaaggtgagctatcggcggtagcagacacatggaggatgttgtgtcctactaaata |
212 |
Q |
| |
|
||||| |||||| || ||||| ||||| ||||| | || ||| |||||||| | | | ||| ||| | | || | || ||| | ||| | ||| |
|
|
| T |
24893027 |
aaccttgtttgagaatgtcttttgcacgaatgatagctgtccatgaaggtgaattgttgccggaagctttcgcttgaaagacgttaggccctgttgtata |
24893126 |
T |
|
| Q |
213 |
tttagcagagagaatatccacccaaagtttatttgatgactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgcgtgccgttcta |
312 |
Q |
| |
|
||||||||| |||| | |||||| | || |||| || || |||||||||||||||||||||||||| || ||||| |||||||| || || |||||| |
|
|
| T |
24893127 |
tttagcagaaagaagcttcacccataacttgtttgtagattggaccatatcccaaactaactttccaagaaggcaagtattagcgtttcgagctgttcta |
24893226 |
T |
|
| Q |
313 |
atacccaagcccccataactcttaggggttgtaattttcttccaacttaccaagtgaatacccttgttgctagtgccacgccaaataaaattgcgcgtgg |
412 |
Q |
| |
|
|||| ||| || ||||| | || || || ||||||||||||||||||||||| ||||| ||||| || || | |||||||| ||||||||||| || | |
|
|
| T |
24893227 |
atactcaaaccaccataccgttttggagtggtaattttcttccaacttaccaaatgaattcccttattacttgaaccacgccatataaaattgcgagttg |
24893326 |
T |
|
| Q |
413 |
tttgatcaatggcatcgcatatgttttgtggaagccagttaattt |
457 |
Q |
| |
|
|||| ||||||| || || ||||||||||| ||||| ||||||| |
|
|
| T |
24893327 |
tttggtcaatggagtcacaaatgttttgtgggagccaattaattt |
24893371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 457
Target Start/End: Original strand, 24989754 - 24990197
Alignment:
| Q |
14 |
catgaatatcaataacagggactaaagagccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctggcctccaagagta |
113 |
Q |
| |
|
|||||||||||||||| || | ||||| |||||| | |||||||| |||||||| || |||||||| ||||| |||||||| ||||||| ||||| || |
|
|
| T |
24989754 |
catgaatatcaataaccggaatcaaagacccaaggagtccatggtggcaccaattgctgaaccaaaaggaggatgaacccgagcctggccgccaagcata |
24989853 |
T |
|
| Q |
114 |
acctagtttgaatatatctttggcacggatgattgatgaccaagaaggtgagctatcggcggtagcagacacatggaggatgttgtgtcctactaaatat |
213 |
Q |
| |
|
||| ||||| ||||| || ||||| ||||| | || |||||||||||| || | ||| ||| | | || |||| || | ||| | ||||| |
|
|
| T |
24989854 |
accatttttgagaatatccttagcacgaatgatagctgcccaagaaggtgaactgttaccggaagctttcgcttgaaggacattaggccctgttgaatat |
24989953 |
T |
|
| Q |
214 |
ttagcagagagaatatccacccaaagtttatttgatgactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgcgtgccgttctaa |
313 |
Q |
| |
|
|||||||| |||| || |||||| | ||||| | | || ||||||| |||||| | ||| |||| ||||||||||| ||||| || || ||||||| |
|
|
| T |
24989954 |
ttagcagaaagaagatgcacccataacttattagtggcttgtaccatattccaaaccagcttcccaataagacaagtgttggcgtttcgagctgttctaa |
24990053 |
T |
|
| Q |
314 |
tacccaagcccccataactcttaggggttgtaattttcttccaacttaccaagtgaatacccttgttgctagtgccacgccaaataaaattgcgcgtggt |
413 |
Q |
| |
|
||| ||| || ||||| || || || |||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| || || || |
|
|
| T |
24990054 |
tacacaaaccaccatactgttttggagtcgtaattttcttccaacttaccaagtgaatacccttgttactagaaccatgccaaataaaattacgagttgt |
24990153 |
T |
|
| Q |
414 |
ttgatcaatggcatcgcatatgttttgtggaagccagttaattt |
457 |
Q |
| |
|
||||||||||| ||| || |||||||| |||||||| ||||||| |
|
|
| T |
24990154 |
ttgatcaatggaatcacaaatgttttgcggaagccaattaattt |
24990197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 202 - 455
Target Start/End: Original strand, 32724744 - 32724997
Alignment:
| Q |
202 |
cctactaaatatttagcagagagaatatccacccaaagtttatttgatgactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgc |
301 |
Q |
| |
|
|||||| ||||||||| | |||||| | |||||| | |||||||| |||| ||||| |||||||||||||||||||| ||||| || || | || | |
|
|
| T |
32724744 |
cctactgaatatttagtatagagaaggttcacccataatttatttggggactagaccatgtcccaaactaactttccaagaagacatgtattttcatttc |
32724843 |
T |
|
| Q |
302 |
gtgccgttctaatacccaagcccccataactcttaggggttgtaattttcttccaacttaccaagtgaatacccttgttgctagtgccacgccaaataaa |
401 |
Q |
| |
|
| || ||||||||||||||||| ||| ||| ||||||| | ||||||||||||||||||||||| |||| ||||||||| |||| ||| ||||||| || |
|
|
| T |
32724844 |
gggctgttctaatacccaagccaccagaacgcttagggctagtaattttcttccaacttaccaactgaacacccttgttactagaaccatgccaaatgaa |
32724943 |
T |
|
| Q |
402 |
attgcgcgtggtttgatcaatggcatcgcatatgttttgtggaagccagttaat |
455 |
Q |
| |
|
||| || || ||||||||||| | ||| || ||||| || || ||||||||||| |
|
|
| T |
32724944 |
attacgggttgtttgatcaatagaatcacaaatgttctgcgggagccagttaat |
32724997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 211 - 449
Target Start/End: Original strand, 38646468 - 38646706
Alignment:
| Q |
211 |
tatttagcagagagaatatccacccaaagtttatttgatgactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgcgtgccgttc |
310 |
Q |
| |
|
||||||| |||||||| || |||||| | |||||| |||||| ||||| ||||||| |||||| ||||| |||||||| ||||| || | |||||||| |
|
|
| T |
38646468 |
tatttagtagagagaagattcacccataacttattttttgactggaccatgtcccaaattaacttcccaagaagacaagtattagcattccttgccgttc |
38646567 |
T |
|
| Q |
311 |
taatacccaagcccccataactcttaggggttgtaattttcttccaacttaccaagtgaatacccttgttgctagtgccacgccaaataaaattgcgcgt |
410 |
Q |
| |
|
| ||||||||||| ||| || ||||| || |||| |||||||||| ||||||| |||||||||||||| |||||||| |||||||||||||| | || |
|
|
| T |
38646568 |
tgatacccaagccaccaagacgtttaggagtagtaactttcttccaatttaccaaatgaatacccttgttactagtgcctcgccaaataaaattccttgt |
38646667 |
T |
|
| Q |
411 |
ggtttgatcaatggcatcgcatatgttttgtggaagcca |
449 |
Q |
| |
|
||||| ||||| ||||| |||||||| |||||||| |
|
|
| T |
38646668 |
tgtttggtcaatactttcgcagatgttttgaggaagcca |
38646706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 13 - 457
Target Start/End: Complemental strand, 23425560 - 23425116
Alignment:
| Q |
13 |
tcatgaatatcaataacagggactaaagagccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctggcctccaagagt |
112 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||| | |||||| |||||||||| || |||||||| ||||| ||||| || || ||||||||||| | |
|
|
| T |
23425560 |
tcatgaatatcaataatggggaccgaagaaccaaggagaccatggggacaccaattgcttaaccaaaacgaggaggaaccggagcccggcctccaagaat |
23425461 |
T |
|
| Q |
113 |
aacctagtttgaatatatctttggcacggatgattgatgaccaagaaggtgagctatcggcggtagcagacacatggaggatgttgtgtcctactaaata |
212 |
Q |
| |
|
| || |||||| || ||||| ||||| ||||| | || ||| |||||||| | | | ||| ||| | | || |||| ||| | ||| | ||| |
|
|
| T |
23425460 |
agccatttttgaaaatgtcttttgcacgaatgatagctgcccatgaaggtgaattgttgccggaagctttcgcttgaaggacgttaggccctgttgtata |
23425361 |
T |
|
| Q |
213 |
tttagcagagagaatatccacccaaagtttatttgatgactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgcgtgccgttcta |
312 |
Q |
| |
|
||||||||| |||| | |||||| | || |||| || || |||||||||||||||||||||||||| || ||| | ||||| || || || |||||| |
|
|
| T |
23425360 |
tttagcagaaagaagtttcacccataacttgtttgtagattggaccatatcccaaactaactttccaagaagtcaattattagcttttcgagctgttcta |
23425261 |
T |
|
| Q |
313 |
atacccaagcccccataactcttaggggttgtaattttcttccaacttaccaagtgaatacccttgttgctagtgccacgccaaataaaattgcgcgtgg |
412 |
Q |
| |
|
|||||||| || ||||| || || || |||||||||||||||||||||||||| |||| || || || | | ||| |||| ||||||||||| || | |
|
|
| T |
23425260 |
atacccaaaccaccatacctttttggagttgtaattttcttccaacttaccaaatgaactcctttattatttgaaccatgccatataaaattgcgagttg |
23425161 |
T |
|
| Q |
413 |
tttgatcaatggcatcgcatatgttttgtggaagccagttaattt |
457 |
Q |
| |
|
|||||||||||| || || ||||||||||| ||||| ||||||| |
|
|
| T |
23425160 |
tttgatcaatggagtcacaaatgttttgtgggagccaattaattt |
23425116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 455
Target Start/End: Original strand, 55020586 - 55020648
Alignment:
| Q |
393 |
ccaaataaaattgcgcgtggtttgatcaatggcatcgcatatgttttgtggaagccagttaat |
455 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||| || |||||||| ||||| ||||| |
|
|
| T |
55020586 |
ccaaataaaattgcgagtggtttgatcaatgttgtcgcaaatattttgtgggagccaattaat |
55020648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 13 - 457
Target Start/End: Original strand, 23206957 - 23207401
Alignment:
| Q |
13 |
tcatgaatatcaataacagggactaaagagccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctggcctccaagagt |
112 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||| | |||||| || |||||| || |||||||||||||| ||||| || || ||||||||||| | |
|
|
| T |
23206957 |
tcatgaatatcaataatggggaccaaagaaccaaggagaccatggggatgccaattgctgaaccaaaaagaggaggaaccggagcccggcctccaagaat |
23207056 |
T |
|
| Q |
113 |
aacctagtttgaatatatctttggcacggatgattgatgaccaagaaggtgagctatcggcggtagcagacacatggaggatgttgtgtcctactaaata |
212 |
Q |
| |
|
|||| |||||| || ||||| ||||| ||||| | || ||| |||||||| || | | ||| | | | | || |||| ||| | ||| | ||| |
|
|
| T |
23207057 |
aaccatttttgaaaatgtcttttgcacgaatgatagctgcccaggaaggtgaactgttgccggaaaccttcgcttgaaggacgttaggccctgttgtata |
23207156 |
T |
|
| Q |
213 |
tttagcagagagaatatccacccaaagtttatttgatgactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgcgtgccgttcta |
312 |
Q |
| |
|
||||||||| |||| || |||||| | || |||| || || |||||||||||||||||||||||||| |||||| | ||||| || || || |||||| |
|
|
| T |
23207157 |
tttagcagaaagaagattcacccataacttgtttgtagattggaccatatcccaaactaactttccaagaagacaaatattagcatttcgagctgttcta |
23207256 |
T |
|
| Q |
313 |
atacccaagcccccataactcttaggggttgtaattttcttccaacttaccaagtgaatacccttgttgctagtgccacgccaaataaaattgcgcgtgg |
412 |
Q |
| |
|
|||||||| || ||||| | || || || ||||||||||||||||||||||| |||| ||| || | | | ||| |||| ||||||||||| || | |
|
|
| T |
23207257 |
atacccaaaccaccataccattttggagtagtaattttcttccaacttaccaaatgaacaccattataaattgaaccaagccatataaaattgcgagttg |
23207356 |
T |
|
| Q |
413 |
tttgatcaatggcatcgcatatgttttgtggaagccagttaattt |
457 |
Q |
| |
|
|||||||||||| || || ||||||||||| ||||| ||||||| |
|
|
| T |
23207357 |
tttgatcaatggagtcacaaatgttttgtgggagccaattaattt |
23207401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 250 - 457
Target Start/End: Complemental strand, 575239 - 575032
Alignment:
| Q |
250 |
gactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgcgtgccgttctaatacccaagcccccataactcttaggggttgtaattt |
349 |
Q |
| |
|
||||| |||| ||||||||||||||| || || ||||| || || || || || |||||||||||||||||||| ||| | | | ||||||| || |||| |
|
|
| T |
575239 |
gactggaccaaatcccaaactaacttaccgaggagacatgtatttgcatttcgagccgttctaatacccaagccaccaaagcgcctaggggtagtgattt |
575140 |
T |
|
| Q |
350 |
tcttccaacttaccaagtgaatacccttgttgctagtgccacgccaaataaaattgcgcgtggtttgatcaatggcatcgcatatgttttgtggaagcca |
449 |
Q |
| |
|
||||||||||||||| |||| |||||||| | |||| |||||||||||||| || |||| ||||| ||||| | | | || |||||||| || ||||| |
|
|
| T |
575139 |
tcttccaacttaccagatgaacacccttgtagttagtaccacgccaaataaagttatgcgttgtttggtcaatagaaccacaaatgttttgcgggagcca |
575040 |
T |
|
| Q |
450 |
gttaattt |
457 |
Q |
| |
|
|||||||| |
|
|
| T |
575039 |
gttaattt |
575032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 256 - 449
Target Start/End: Original strand, 11586302 - 11586495
Alignment:
| Q |
256 |
accatatcccaaactaactttccaagcagacaagtgttagcgttgcgtgccgttctaatacccaagcccccataactcttaggggttgtaattttcttcc |
355 |
Q |
| |
|
||||| |||||||||||||| | ||| |||||||| ||||| || ||||||||| ||||||||||| ||| || ||||| || |||| |||||||| |
|
|
| T |
11586302 |
accatgtcccaaactaacttcctaagaagacaagtattagcattcattgccgttctgatacccaagccaccaagacgtttaggagtagtaactttcttcc |
11586401 |
T |
|
| Q |
356 |
aacttaccaagtgaatacccttgttgctagtgccacgccaaataaaattgcgcgtggtttgatcaatggcatcgcatatgttttgtggaagcca |
449 |
Q |
| |
|
|| ||||||| |||||||||||||| |||| ||| |||||||||||||| | || ||||| ||||| |||| | |||||||| |||||||| |
|
|
| T |
11586402 |
aatttaccaaatgaatacccttgttactagagcctcgccaaataaaattccttgttgtttggtcaatactatcgaaaatgttttgaggaagcca |
11586495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 455
Target Start/End: Original strand, 26708173 - 26708235
Alignment:
| Q |
393 |
ccaaataaaattgcgcgtggtttgatcaatggcatcgcatatgttttgtggaagccagttaat |
455 |
Q |
| |
|
||||||||||||||| || |||||||||||| ||| ||||||||||| || ||||| ||||| |
|
|
| T |
26708173 |
ccaaataaaattgcgagttgtttgatcaatgctatcacatatgttttgggggagccaattaat |
26708235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 454
Target Start/End: Complemental strand, 41655789 - 41655728
Alignment:
| Q |
393 |
ccaaataaaattgcgcgtggtttgatcaatggcatcgcatatgttttgtggaagccagttaa |
454 |
Q |
| |
|
||||||||||||| | ||||||||||||||| |||||| |||||||| || ||||| |||| |
|
|
| T |
41655789 |
ccaaataaaattgtgagtggtttgatcaatgctatcgcagatgttttgagggagccaattaa |
41655728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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