View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8893_low_24 (Length: 454)

Name: NF8893_low_24
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8893_low_24
NF8893_low_24
[»] chr7 (5 HSPs)
chr7 (170-416)||(24625133-24625375)
chr7 (12-108)||(24624974-24625069)
chr7 (247-314)||(41020506-41020573)
chr7 (256-314)||(27093404-27093462)
chr7 (256-314)||(27184839-27184897)
[»] chr5 (3 HSPs)
chr5 (249-314)||(23012392-23012457)
chr5 (250-314)||(30502373-30502437)
chr5 (250-314)||(30542716-30542780)
[»] chr4 (5 HSPs)
chr4 (267-314)||(13134460-13134507)
chr4 (267-314)||(40742601-40742648)
chr4 (249-314)||(4781255-4781320)
chr4 (277-314)||(21539879-21539916)
chr4 (270-314)||(999353-999397)
[»] chr2 (3 HSPs)
chr2 (251-314)||(31808087-31808150)
chr2 (257-314)||(37411236-37411293)
chr2 (271-314)||(30527601-30527644)
[»] chr8 (3 HSPs)
chr8 (249-314)||(33405368-33405433)
chr8 (251-314)||(31580113-31580176)
chr8 (250-314)||(38079009-38079073)
[»] chr6 (3 HSPs)
chr6 (249-314)||(13364689-13364754)
chr6 (267-317)||(17411870-17411920)
chr6 (249-314)||(9658889-9658954)
[»] chr1 (4 HSPs)
chr1 (267-314)||(35999324-35999371)
chr1 (250-311)||(13997896-13997957)
chr1 (250-319)||(21530694-21530763)
chr1 (271-319)||(52903254-52903302)
[»] scaffold0697 (1 HSPs)
scaffold0697 (250-319)||(1649-1718)
[»] chr3 (1 HSPs)
chr3 (265-314)||(29508454-29508503)


Alignment Details
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 170 - 416
Target Start/End: Original strand, 24625133 - 24625375
Alignment:
Q  170 ttctctctatgactatcacacatagtacttcctatgttcctattggacactacctatcgagcatggacatttttta-attagacatgtgtcgtgttcaac 268  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | |||||||||| |||||||| ||||| ||||||||    
T  24625133 ttctctctatgactatcacacatagtacttcctatgttcctattagacactacctattgagcacgaacattttttagattagacacgtgtcatgttcaac 24625232  T
Q  269 atcgacacatataataacactaaattttatgattttcttaaattatcaacgatattaatgtgtctgtatcgtgtctgatgtccgtatttgtgtttcatat 368  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     |||| | ||||||| |  || ||||||||    
T  24625233 atcaacatatataataacactaaattttatgattttcttaaattatcaacgatattaatgtctctg----atgtccg-tgtccgtgtccgtatttcatat 24625327  T
Q  369 gaagttaccctttattactttatttcttatattattaacggtgtcaac 416  Q
    |||  |||||||||||| || ||||||||||||||||||||| |||||    
T  24625328 gaaactaccctttattatttcatttcttatattattaacggtatcaac 24625375  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 24624974 - 24625069
Alignment:
Q  12 tcaccaaaatctcactcaccccatttaacctcctatactctgcgtcatctctcacatcaccactaaccacacacactcacacccatatctctctcaa 108  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24624974 tcaccaaaatctcactcaccccatttaatcccctatactctgcgtcatctctcacatcaccactaaccaca-acactcacacccatatctctctcaa 24625069  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 314
Target Start/End: Complemental strand, 41020573 - 41020506
Alignment:
Q  247 ttagacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 314  Q
    ||||| ||||||||||||||||| |||| |||||||| |||||||||| | |||||||  ||||||||    
T  41020573 ttagatatgtgtcgtgttcaacaccgacgcatataattacactaaattatgtgatttttgtaaattat 41020506  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 314
Target Start/End: Original strand, 27093404 - 27093462
Alignment:
Q  256 tgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 314  Q
    ||||||||  |||| |||| |||||||| |||||||||| | |||||||||||||||||    
T  27093404 tgtcgtgtctaacaccgacgcatataattacactaaattatgtgattttcttaaattat 27093462  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 314
Target Start/End: Complemental strand, 27184897 - 27184839
Alignment:
Q  256 tgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 314  Q
    ||||||||  |||| |||| |||||||| |||||||||| | |||||||||||||||||    
T  27184897 tgtcgtgtctaacaccgacgcatataattacactaaattatgtgattttcttaaattat 27184839  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 314
Target Start/End: Original strand, 23012392 - 23012457
Alignment:
Q  249 agacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 314  Q
    ||||||||||||||| ||||| ||||||||||||| ||| |||||| ||||||||||| |||||||    
T  23012392 agacatgtgtcgtgtccaacaccgacacatataattacattaaattatatgattttctcaaattat 23012457  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 30502373 - 30502437
Alignment:
Q  250 gacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 314  Q
    |||||||||||||| | ||| ||||||||||||| ||||| ||||   ||||||||| |||||||    
T  30502373 gacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaattat 30502437  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 30542716 - 30542780
Alignment:
Q  250 gacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 314  Q
    |||||||||||||| | ||| ||||||||||||| ||||| ||||   ||||||||| |||||||    
T  30542716 gacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaattat 30542780  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 314
Target Start/End: Complemental strand, 13134507 - 13134460
Alignment:
Q  267 acatcgacacatataataacactaaattttatgattttcttaaattat 314  Q
    ||||||||||||||||| |||||||||| | |||||||||||||||||    
T  13134507 acatcgacacatataattacactaaattatgtgattttcttaaattat 13134460  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 314
Target Start/End: Complemental strand, 40742648 - 40742601
Alignment:
Q  267 acatcgacacatataataacactaaattttatgattttcttaaattat 314  Q
    ||||||||||||||||| |||||| ||| ||||||||||| |||||||    
T  40742648 acatcgacacatataattacactagattatatgattttctcaaattat 40742601  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 4781320 - 4781255
Alignment:
Q  249 agacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 314  Q
    ||||||||||| | |  |||||||| ||||||||| |||||||||| ||||| ||| |||||||||    
T  4781320 agacatgtgtcatatctaacatcgatacatataatcacactaaattatatgagttttttaaattat 4781255  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 314
Target Start/End: Original strand, 21539879 - 21539916
Alignment:
Q  277 atataataacactaaattttatgattttcttaaattat 314  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  21539879 atataattacactaaattatatgattttcttaaattat 21539916  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 999353 - 999397
Alignment:
Q  270 tcgacacatataataacactaaattttatgattttcttaaattat 314  Q
    |||||||||||||| |||||||||| |||||||| || |||||||    
T  999353 tcgacacatataattacactaaattatatgatttactcaaattat 999397  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 31808150 - 31808087
Alignment:
Q  251 acatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 314  Q
    |||||||||||||||||||  |||||||||||| ||||| |||| | ||||||| |||||||||    
T  31808150 acatgtgtcgtgttcaacactgacacatataattacactgaattatgtgattttgttaaattat 31808087  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 37411236 - 37411293
Alignment:
Q  257 gtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 314  Q
    ||||||||| ||||||||||||||||| ||||| |||| | ||||||||| |||||||    
T  37411236 gtcgtgttcgacatcgacacatataatcacactgaattatgtgattttctcaaattat 37411293  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 314
Target Start/End: Original strand, 30527601 - 30527644
Alignment:
Q  271 cgacacatataataacactaaattttatgattttcttaaattat 314  Q
    ||||||||||||| |||||||||| ||||||||||| |||||||    
T  30527601 cgacacatataattacactaaattatatgattttctcaaattat 30527644  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 314
Target Start/End: Original strand, 33405368 - 33405433
Alignment:
Q  249 agacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 314  Q
    ||||||||||||||| | ||| ||||||||||||| |||||||||| | || |||||| |||||||    
T  33405368 agacatgtgtcgtgtccgacaccgacacatataattacactaaattatgtgtttttctcaaattat 33405433  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 31580113 - 31580176
Alignment:
Q  251 acatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 314  Q
    |||||||||| || | |||||||||| |||||| ||||| |||| | |||||||||||||||||    
T  31580113 acatgtgtcgcgtccgacatcgacacctataattacactcaattatgtgattttcttaaattat 31580176  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 38079073 - 38079009
Alignment:
Q  250 gacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 314  Q
    |||||| ||||||| | |||||||| |||||||| ||||| |||  | |||||||||||||||||    
T  38079073 gacatgcgtcgtgtccgacatcgacgcatataattacactgaatcatgtgattttcttaaattat 38079009  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 314
Target Start/End: Original strand, 13364689 - 13364754
Alignment:
Q  249 agacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 314  Q
    |||||||| |||||| ||||| |||||||||| || ||||| |||| ||||||||||| |||||||    
T  13364689 agacatgtatcgtgtccaacaccgacacatatgattacactgaattatatgattttctcaaattat 13364754  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 17411870 - 17411920
Alignment:
Q  267 acatcgacacatataataacactaaattttatgattttcttaaattatcaa 317  Q
    ||||| ||||||||||| | ||| |||| ||||||||||||||||||||||    
T  17411870 acatccacacatataattatactgaattatatgattttcttaaattatcaa 17411920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 9658954 - 9658889
Alignment:
Q  249 agacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 314  Q
    ||||| |||||||||  |||| ||||| ||||||| ||||| |||| | |||||||||||||||||    
T  9658954 agacacgtgtcgtgtctaacaccgacaaatataattacactgaattatgtgattttcttaaattat 9658889  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 314
Target Start/End: Original strand, 35999324 - 35999371
Alignment:
Q  267 acatcgacacatataataacactaaattttatgattttcttaaattat 314  Q
    ||||| ||||||||||| | |||||||| |||||||||||||||||||    
T  35999324 acatcaacacatataattatactaaattatatgattttcttaaattat 35999371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 13997957 - 13997896
Alignment:
Q  250 gacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaat 311  Q
    |||||||||||| | ||||| ||||||||||||| ||||| |||| | ||||||| ||||||    
T  13997957 gacatgtgtcgtctccaacaccgacacatataattacactgaattatgtgatttttttaaat 13997896  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 21530763 - 21530694
Alignment:
Q  250 gacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattatcaacg 319  Q
    |||||||||||||| | ||| |||||| |||||| | || ||||| ||||||||||| ||||||| ||||    
T  21530763 gacatgtgtcgtgtccgacaccgacacttataattataccaaattatatgattttctcaaattattaacg 21530694  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 52903302 - 52903254
Alignment:
Q  271 cgacacatataataacactaaattttatgattttcttaaattatcaacg 319  Q
    ||||||||||||| ||||| |||| ||||||||| ||||||||| ||||    
T  52903302 cgacacatataattacactgaattatatgattttattaaattattaacg 52903254  T

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Target: scaffold0697 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 1718 - 1649
Alignment:
Q  250 gacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattatcaacg 319  Q
    |||||||||||||| | ||| |||||| |||||| | || ||||| ||||||||||| ||||||| ||||    
T  1718 gacatgtgtcgtgtccgacaccgacacttataattataccaaattatatgattttctcaaattattaacg 1649  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 29508503 - 29508454
Alignment:
Q  265 caacatcgacacatataataacactaaattttatgattttcttaaattat 314  Q
    ||||||||||||||||||| ||||| |||| ||||||||| | |||||||    
T  29508503 caacatcgacacatataattacactgaattatatgattttttcaaattat 29508454  T

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