View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8893_low_26 (Length: 447)
Name: NF8893_low_26
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8893_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 49305401 - 49304981
Alignment:
| Q |
11 |
gatggacatcatcttatagtagtattttgtttaacgggcaagattgatgtacaatgtctatttttatttttgaacattgatgtcgttgtgtgtggttttc |
110 |
Q |
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| T |
49305401 |
gatggaaatcatcttatagtagtattttgtttaacgggcaagattgatgtacaatgtctatttttatttttgaacattgatgtcgttgtgtgtagttttc |
49305302 |
T |
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| Q |
111 |
ttgtatctgcaaagtattggtcttaatgatcatattccagagattaatttggttggttaatgctttgtttttcctttgcagcaatatattcacacccttg |
210 |
Q |
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| T |
49305301 |
ttgtatgtgcaaagtattggtcttaatgatcatattccagagattaatttggttggttaatgctttgtttttcttttgcagcaatatattcacacccttg |
49305202 |
T |
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| Q |
211 |
aggcctcgctccaggaggaaatgtcacgacatgccccattatatggtgctggtctggaggctctatcaatgaaagagttggaaacaatatctcgtattca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49305201 |
aggcctcgctccaggaggaaatgtcacgacatgccccattatatggtgctggtctggaggctctatcaatgaaagagttggaaacaatatctcgtattca |
49305102 |
T |
|
| Q |
311 |
tgaagagggcctaaggcagatccatgcccttcaacaacgaaaagggagtccagcagggagtcctctcttgagtcctcatgctctccctcacagccatgga |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49305101 |
tgaagagggcctaaggcagatccatgcccttcaacaacgaaaagggagtccagcagggagtcctctcttgagtcctcatgctctccctcacagccatgga |
49305002 |
T |
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| Q |
411 |
ttatatcctgcagggtctgtg |
431 |
Q |
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||||||||||||||||||||| |
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| T |
49305001 |
ttatatcctgcagggtctgtg |
49304981 |
T |
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