View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8893_low_31 (Length: 433)
Name: NF8893_low_31
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8893_low_31 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 19911863 - 19911441
Alignment:
| Q |
1 |
agtccgaatccaaactcaccacgatgactcagacatgtcaaccacccaatccatgactcaccaaggggacgaccttgacccatcggaggagtccaatcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
19911863 |
agtccgaatccaaactcaccacgatgactcagacatgtcaaccacccaatccatgactcaccaaggggacgaccctgactcatcggaggagtccaatcct |
19911764 |
T |
|
| Q |
101 |
ccggccactagaccacagttcactcgccgcatctccacacgtctctcggtcgaatcaccagaaaactcctctggcggaggaaatctccggccgcaactct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19911763 |
ccggccactagaccacagttcactcgccgcatctccacacgtctctcggtcgaatcaccagaaaactcctctggcggaggaaatctccggtcgcaactct |
19911664 |
T |
|
| Q |
201 |
cacgaagaaattccaccaatgtgtcatcagagccgtttcaccgaggacgtgtagtgacttttagagacaacttcgatgaggattatcccgacgatgatga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19911663 |
cacgaagaaattccaccaatgtgtcatcagagccgtttcaccgaggacgtgtagtgacttttagagacaacttcgatgaggatgatcccgacgatgatga |
19911564 |
T |
|
| Q |
301 |
caacaagaaaccagcgacagtgagggcactttcagcaagggaggcagtggcagcgcaggaagcggcagaagccgctgcagcaacagaggtggagacttca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19911563 |
caacaagaaaccagcgacagtgagggcactttcagcaagggaggcagtggcagcgcaggaagcggcagaagctgctgcagcaacagaggtggagacttca |
19911464 |
T |
|
| Q |
401 |
gaaggggctccaatgatgatgtc |
423 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
19911463 |
gaaggggctccaatgatgatgtc |
19911441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University