View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8893_low_33 (Length: 378)
Name: NF8893_low_33
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8893_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 35860108 - 35859738
Alignment:
| Q |
1 |
tcttggcctaccgacaattcataagttggaatcacatcaactgtacgagcctgaacaacatgaggtgtagaagaaagcatatactgtgactgataaacaa |
100 |
Q |
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| T |
35860108 |
tcttggcctaccgacaattcataagttggaatcacatcaactgtacgagcctgaactacatgaggtgtagaagaaagcatatactgtgactgataaacaa |
35860009 |
T |
|
| Q |
101 |
ccatgtcattggcagactcaatgctcatttcgggattctgaaccacagccaggtccatgctctcattaaatccttggctttctaaaacagtcaaatcatt |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35860008 |
ccatgtcattggcagactcgatgctcatttcgggattctgaaccacagccaggtccatgctctcattaaatccttggctttctgaaacagtcaaatcatt |
35859909 |
T |
|
| Q |
201 |
gttctccgataggaccaactcatggttttgttcaggaaaggacaactcatcgtttccatcatgctcaggtttttgattcatggccaccttatggtcatgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
35859908 |
gttctccgataggaccaactcatggttttgttcaggaaaggacaactcatcgtttccatcatgctcaggtttttgatccatggccactttatggtcatgc |
35859809 |
T |
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| Q |
301 |
tcatgctcataagtttgaccatcaccaccttcctagtcatggttttgttccaacccgaattgatgtccatc |
371 |
Q |
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| T |
35859808 |
tcatgctcataagtttgaccatcaccaccttcctagtcatggttttgttccaacccgaattgatgttcatc |
35859738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 35868289 - 35868055
Alignment:
| Q |
1 |
tcttggcctaccgacaattcataagttggaatcacatcaactgtacgagcctgaacaacatgaggtgtagaagaaagcatatactgtgactgataaacaa |
100 |
Q |
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|||||||| || | || ||||||||||||| | ||| ||| |||||||||||||| ||||| | | ||||||||||||| |||||||||| | | | |
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| T |
35868289 |
tcttggcccactgtcagttcataagttggacttacagcaagtgtacgagcctgaattacatgggattcagaagaaagcataaactgtgactgttgcatac |
35868190 |
T |
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| Q |
101 |
ccatgtcattggcagactcaatgctcatttcgggattctgaaccacagccaggtccatgctctcattaaatccttggctttctaaaacagtcaaatcatt |
200 |
Q |
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||| |||||| |||| ||| || ||| || || | ||||| |||||||||||||||| |||||| |||||||||| |||| |||||| | | || ||| |
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| T |
35868189 |
tcatatcattgtcagaatcagcgcccatctcagggtgctgaatcacagccaggtccatgttctcatcaaatccttggttttcaaaaacatttagattatt |
35868090 |
T |
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| Q |
201 |
gttctccgataggaccaactcatggttttgttcaggaa |
238 |
Q |
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|||||| || ||||| |||||||||||| |||||| |
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| T |
35868089 |
gttctc---tatgaccagatcatggttttgtccaggaa |
35868055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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