View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8893_low_34 (Length: 364)
Name: NF8893_low_34
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8893_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 24283923 - 24284274
Alignment:
| Q |
1 |
gattcacctgcttacataaagattaattctggtagtggacagagtgaagttatgaatgcagtggagaagatctgtttgttggttaattctttcccttcca |
100 |
Q |
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| T |
24283923 |
gattcacctgcttccataaagattaattctggtagtggacagagtgaagttatgaatgcagtagagaagatctgtttgttggttaattctttcccttcca |
24284022 |
T |
|
| Q |
101 |
aaagaccaactggcagggtggttgctgttattgagaggtctccacgtcgagagtgtatagttggtcatcttaatgtgaagcaatgggttttttcccagga |
200 |
Q |
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| T |
24284023 |
aaagaccaactggcagggtggttgctgttattgagaggtctccacgccgagagtgtatagttggtcatcttaatgtgaagcaatgggttttttcccagga |
24284122 |
T |
|
| Q |
201 |
aataaacaagaaagatccaaggaagaataagaattcagtgtctgagcatgaatatatccaactgacaccaattgatccaaagtttcctaacgtaatgctt |
300 |
Q |
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| T |
24284123 |
aataaacaagaaagatccaaggaagaataagaattcagtttctgagcatgaatatatccaactgacaccaattgatccaaagtttcctaacataatgctt |
24284222 |
T |
|
| Q |
301 |
cttgttagagatttaccagagagcattaagagaaggctgaaaaacggtgatg |
352 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
24284223 |
cttgttagagatttaccaaagagcattaagataaggctgaaaaacggtgatg |
24284274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 24378294 - 24377943
Alignment:
| Q |
1 |
gattcacctgcttacataaagattaattctggtagtggacagagtgaagttatgaatgcagtggagaagatctgtttgttggttaattctttcccttcca |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24378294 |
gattcacctgcttccataaagattaattctggtagtggacagagtgaagttatgaatgcagtagagaagatctgtttgttggttaattctttcccttcca |
24378195 |
T |
|
| Q |
101 |
aaagaccaactggcagggtggttgctgttattgagaggtctccacgtcgagagtgtatagttggtcatcttaatgtgaagcaatgggttttttcccagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24378194 |
aaagaccaactggcagggtggttgctgttattgagaggtctccacgccgagagtgtatagttggtcatcttaatgtgaagcaatgggttttttcccagga |
24378095 |
T |
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| Q |
201 |
aataaacaagaaagatccaaggaagaataagaattcagtgtctgagcatgaatatatccaactgacaccaattgatccaaagtttcctaacgtaatgctt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24378094 |
aataaacaagaaagatccaaggaagaataagaattcagtttctgagcatgaatatatccaactgacaccaattgatccaaagtttcctaacataatgctt |
24377995 |
T |
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| Q |
301 |
cttgttagagatttaccagagagcattaagagaaggctgaaaaacggtgatg |
352 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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|
| T |
24377994 |
cttgttagagatttaccaaagagcattaagataaggctgaaaaacggtgatg |
24377943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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