View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8893_low_38 (Length: 360)
Name: NF8893_low_38
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8893_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 4089181 - 4088837
Alignment:
| Q |
1 |
ctctctttaacatttttattataagaagttaaaagcgtatataaatcaaaacacatgtaaattagtcacttttgtgttattgatactcatgaaaatgtgt |
100 |
Q |
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| T |
4089181 |
ctctcttgaacatttttattataagaagttaaaagcgtatataaatcaaaacacatgtaaattagtcactt--gtgttattgatacacatgaaaatgtat |
4089084 |
T |
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| Q |
101 |
ttatagatggtagattatcgggttttgtaatagttgaattagatccgacttaaattttgaaatggtatcaaaaccatatttcgatcatacctttaaaatt |
200 |
Q |
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| T |
4089083 |
ttatacgtggtagattatcgggttttgtaatagttgaattagatccgacttaaattttgaaatggtatcaaaaccatatttcgatcatacctttaaaatt |
4088984 |
T |
|
| Q |
201 |
ctcacaagtttacatcgcaagatacatgcttcgcataaaaattctaagttttacatctaatataaaaactattaaatcttaggagtttagtgtgttgtgt |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4088983 |
ctcacaagtttacatcgcaagatacatgcttcacataaaaattctaagctttacatttaatataaaaactattaaatcttaggagttttgtgtgttgtgc |
4088884 |
T |
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| Q |
301 |
ggaaaatccttaaagataacacgatgtgtctcatagtacttcattct |
347 |
Q |
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| T |
4088883 |
ggaaaatccttaaagataacacgatgtgtctcatagtacttcattct |
4088837 |
T |
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