View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8893_low_43 (Length: 331)

Name: NF8893_low_43
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8893_low_43
NF8893_low_43
[»] chr1 (21 HSPs)
chr1 (23-321)||(19257445-19257731)
chr1 (240-311)||(52271089-52271160)
chr1 (239-315)||(25126675-25126751)
chr1 (240-314)||(26854164-26854238)
chr1 (223-300)||(23505966-23506043)
chr1 (259-314)||(11769857-11769912)
chr1 (264-314)||(25494357-25494407)
chr1 (240-296)||(25665614-25665670)
chr1 (259-314)||(18300866-18300921)
chr1 (259-314)||(23519632-23519687)
chr1 (259-314)||(30675680-30675735)
chr1 (259-315)||(26657671-26657727)
chr1 (259-314)||(12423778-12423833)
chr1 (223-314)||(21548844-21548935)
chr1 (259-314)||(30781956-30782011)
chr1 (272-314)||(9328363-9328405)
chr1 (272-310)||(9252486-9252524)
chr1 (272-313)||(9353209-9353250)
chr1 (206-259)||(15416765-15416818)
chr1 (259-300)||(23223624-23223665)
chr1 (245-314)||(25373942-25374011)
[»] chr2 (19 HSPs)
chr2 (200-314)||(18818898-18819011)
chr2 (206-314)||(18236113-18236221)
chr2 (177-314)||(17414945-17415082)
chr2 (206-296)||(19541250-19541340)
chr2 (254-314)||(22525678-22525738)
chr2 (223-314)||(14921866-14921957)
chr2 (226-300)||(34063671-34063745)
chr2 (259-314)||(16593614-16593669)
chr2 (255-314)||(27417122-27417181)
chr2 (247-313)||(1732748-1732814)
chr2 (264-314)||(30998967-30999017)
chr2 (265-314)||(25474233-25474282)
chr2 (271-316)||(32619819-32619864)
chr2 (264-313)||(35708000-35708049)
chr2 (259-314)||(21505002-21505057)
chr2 (241-312)||(24188167-24188238)
chr2 (272-314)||(31274152-31274194)
chr2 (201-314)||(17862606-17862719)
chr2 (266-314)||(31262193-31262241)
[»] chr6 (12 HSPs)
chr6 (197-314)||(26499649-26499765)
chr6 (259-314)||(15575120-15575175)
chr6 (202-293)||(17198628-17198719)
chr6 (199-314)||(26512582-26512697)
chr6 (199-314)||(26517698-26517813)
chr6 (259-314)||(17860312-17860367)
chr6 (254-298)||(24507301-24507345)
chr6 (264-314)||(30355513-30355563)
chr6 (225-280)||(12972214-12972269)
chr6 (271-314)||(33638380-33638423)
chr6 (272-314)||(33638282-33638324)
chr6 (259-312)||(15998708-15998761)
[»] chr4 (24 HSPs)
chr4 (206-314)||(31859711-31859819)
chr4 (226-310)||(23353818-23353902)
chr4 (235-314)||(17187369-17187448)
chr4 (216-314)||(33519226-33519324)
chr4 (199-286)||(18444454-18444541)
chr4 (215-314)||(22119817-22119915)
chr4 (200-314)||(21077429-21077542)
chr4 (227-312)||(4732954-4733039)
chr4 (259-310)||(10320084-10320135)
chr4 (226-302)||(29437669-29437745)
chr4 (259-314)||(17026560-17026615)
chr4 (259-314)||(47024629-47024684)
chr4 (259-313)||(1695710-1695764)
chr4 (264-314)||(5906631-5906681)
chr4 (240-314)||(13064622-13064696)
chr4 (227-300)||(20985224-20985297)
chr4 (214-314)||(15192399-15192499)
chr4 (214-314)||(27302973-27303073)
chr4 (266-313)||(5676397-5676444)
chr4 (259-314)||(18898178-18898233)
chr4 (267-314)||(34864167-34864214)
chr4 (264-314)||(12111196-12111246)
chr4 (256-314)||(19601994-19602052)
chr4 (259-312)||(51884800-51884853)
[»] chr3 (16 HSPs)
chr3 (243-315)||(19542971-19543043)
chr3 (243-311)||(18474369-18474437)
chr3 (256-314)||(19219071-19219129)
chr3 (259-315)||(1475143-1475199)
chr3 (259-314)||(25883299-25883354)
chr3 (248-314)||(5632395-5632461)
chr3 (206-314)||(11475043-11475156)
chr3 (214-314)||(10341983-10342083)
chr3 (264-310)||(12573490-12573536)
chr3 (264-310)||(13549954-13550000)
chr3 (206-306)||(8402361-8402461)
chr3 (215-310)||(11521365-11521460)
chr3 (268-314)||(16970658-16970704)
chr3 (259-300)||(18066007-18066048)
chr3 (277-310)||(28422652-28422685)
chr3 (264-296)||(19263772-19263804)
[»] chr8 (20 HSPs)
chr8 (188-307)||(5153961-5154080)
chr8 (201-315)||(27097607-27097721)
chr8 (201-314)||(28291906-28292019)
chr8 (216-314)||(29291966-29292064)
chr8 (245-314)||(30850949-30851018)
chr8 (200-314)||(11437616-11437730)
chr8 (188-314)||(13583308-13583438)
chr8 (235-296)||(30543976-30544037)
chr8 (244-305)||(31436675-31436735)
chr8 (223-296)||(32239502-32239575)
chr8 (259-313)||(16052140-16052194)
chr8 (259-314)||(16054490-16054545)
chr8 (255-314)||(22894391-22894450)
chr8 (259-313)||(11310120-11310173)
chr8 (227-293)||(12357696-12357762)
chr8 (227-293)||(12358824-12358890)
chr8 (264-314)||(13081803-13081853)
chr8 (264-314)||(28901218-28901268)
chr8 (222-314)||(14424639-14424731)
chr8 (267-314)||(28902285-28902332)
[»] scaffold0011 (1 HSPs)
scaffold0011 (240-314)||(228031-228105)
[»] scaffold0190 (1 HSPs)
scaffold0190 (213-313)||(11516-11615)
[»] chr7 (19 HSPs)
chr7 (202-314)||(8308843-8308954)
chr7 (234-300)||(24596842-24596908)
chr7 (264-314)||(7494892-7494942)
chr7 (259-313)||(29544717-29544771)
chr7 (237-312)||(7372410-7372484)
chr7 (223-314)||(18496761-18496852)
chr7 (259-314)||(20017149-20017204)
chr7 (255-312)||(4828986-4829043)
chr7 (240-314)||(1074649-1074723)
chr7 (264-314)||(20470678-20470728)
chr7 (264-314)||(21545695-21545745)
chr7 (259-315)||(315368-315424)
chr7 (264-308)||(7815525-7815569)
chr7 (259-314)||(9801738-9801793)
chr7 (259-314)||(22067666-22067721)
chr7 (240-296)||(3487212-3487266)
chr7 (259-296)||(23125115-23125152)
chr7 (252-313)||(30405791-30405852)
chr7 (274-314)||(20446398-20446438)
[»] chr5 (18 HSPs)
chr5 (222-314)||(19763712-19763804)
chr5 (172-314)||(22643682-22643823)
chr5 (259-313)||(17027724-17027778)
chr5 (216-314)||(18178298-18178395)
chr5 (274-314)||(7742748-7742788)
chr5 (177-314)||(20694836-20694975)
chr5 (191-291)||(15695037-15695137)
chr5 (204-276)||(20083700-20083772)
chr5 (259-311)||(26329933-26329985)
chr5 (215-310)||(17695282-17695377)
chr5 (223-306)||(26070678-26070761)
chr5 (264-314)||(16622545-16622594)
chr5 (259-314)||(11274193-11274248)
chr5 (280-314)||(12339899-12339933)
chr5 (264-314)||(18452680-18452730)
chr5 (265-315)||(25680782-25680832)
chr5 (264-314)||(30072312-30072362)
chr5 (265-314)||(24841949-24841998)
[»] scaffold0337 (1 HSPs)
scaffold0337 (254-298)||(2020-2064)
[»] scaffold0065 (1 HSPs)
scaffold0065 (254-298)||(12456-12500)
[»] scaffold1149 (1 HSPs)
scaffold1149 (244-314)||(1983-2053)
[»] scaffold0650 (1 HSPs)
scaffold0650 (272-314)||(5646-5688)
[»] scaffold0362 (1 HSPs)
scaffold0362 (214-314)||(7815-7915)
[»] scaffold0282 (1 HSPs)
scaffold0282 (259-314)||(22477-22532)
[»] scaffold0188 (1 HSPs)
scaffold0188 (272-314)||(26831-26873)
[»] scaffold0171 (1 HSPs)
scaffold0171 (264-314)||(21594-21644)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 23 - 321
Target Start/End: Original strand, 19257445 - 19257731
Alignment:
Q  23 caaccgacatcattacaaaacaatnnnnnnncataccatagtgaggtagtaaccaacactccctgcccacacaccatgcacaaggtgcatgaactagggc 122  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19257445 caaccgacatcattacaaaacaatagaaaaacataccatagtgaggtagtaaccaacactccctgcccacacaccatgcacaaggtgcatgaactagggc 19257544  T
Q  123 gcataaggtagtagc-aagagtgcctcttgcgcagaggtgcatggcttgtgtgcaggtgcgcttatggcagcccatcatgtgcaaattttgttgttttct 221  Q
    |||| |||||||||| |||| |||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||    
T  19257545 gcatgaggtagtagccaagactgcctcttgcgcagaggtgcatg-------------tgcgcttatggcagcccatcatgtgcaaattttgttgttttct 19257631  T
Q  222 tccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaacttgatgt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19257632 tccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaacttgatgt 19257731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 240 - 311
Target Start/End: Original strand, 52271089 - 52271160
Alignment:
Q  240 ttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaag 311  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  52271089 ttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaag 52271160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 25126751 - 25126675
Alignment:
Q  239 tttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaact 315  Q
    |||||||||||||||||||||||| ||||||| ||||||||||| |||||||||| ||||||||  |||||||||||    
T  25126751 tttccgtcttgcaatgccttggaacttgaaatgaattttcttcattttgtattgtattcaaagattttctaagaact 25126675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 240 - 314
Target Start/End: Original strand, 26854164 - 26854238
Alignment:
Q  240 ttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| |||||||||||||||||| || |||| ||||||||||||||||||||||||||||| | |||||||||||    
T  26854164 ttccatcttgcaatgccttggaacttcaaatgaattttcttcactttgtattgtcttcaaatatcttctaagaac 26854238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 223 - 300
Target Start/End: Complemental strand, 23506043 - 23505966
Alignment:
Q  223 ccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaa 300  Q
    ||||||||| ||| || ||| |||||||| || ||||||| ||||||| |||||||||||||||||||||||||||||    
T  23506043 ccctttttccagcgttattctgtcttgcattgtcttggaacttgaaatgaattttcttcactttgtattgtcttcaaa 23505966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 11769857 - 11769912
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  11769857 ggaacttgaaatgaattttcttcactttgtattgtcttcaaaaaccttctaagaac 11769912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 25494357 - 25494407
Alignment:
Q  264 ttgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  25494357 ttgaaatgaattttcttcactttgtattgtcttcaaaaaccttctaagaac 25494407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 25665614 - 25665670
Alignment:
Q  240 ttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtctt 296  Q
    ||||||||||||||||||||||| || |||| | |||||||||||||||||||||||    
T  25665614 ttccgtcttgcaatgccttggaacttcaaatgatttttcttcactttgtattgtctt 25665670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 18300866 - 18300921
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| ||||||||| ||||||||||| ||||||||||||||| |||||||||||||    
T  18300866 ggaatttgaaataatttttcttcactctgtattgtcttcaaaaaccttctaagaac 18300921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 23519632 - 23519687
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| ||||||||||||||||||||||| ||||||||||||  |||||||||||||    
T  23519632 ggaacttgaaataaattttcttcactttctattgtcttcaacaaccttctaagaac 23519687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 30675735 - 30675680
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| ||||||| |||||||||||||||||||| |||||||| |||||||||||||    
T  30675735 ggaacttgaaatgaattttcttcactttgtattatcttcaaaaaccttctaagaac 30675680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 26657727 - 26657671
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaact 315  Q
    |||| ||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||    
T  26657727 ggaacttgaaatgaattttcttcactttgttttgtcttcaaaaaccttataagaact 26657671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 12423778 - 12423833
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| ||||||| ||||| ||||||||||||||||||||||  |||||||||||||    
T  12423778 ggaacttgaaatgaatttccttcactttgtattgtcttcaacaaccttctaagaac 12423833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 21548935 - 21548844
Alignment:
Q  223 ccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||||| |||||| || ||||||| |||||||||||| || |||| |||||| ||||  ||||||| ||||||||   |||||||||||    
T  21548935 ccctttttctagcattctttcgtcttgtaatgccttggaacttcaaatgaatttttttcaacttgtattatcttcaaatgtcttctaagaac 21548844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 30782011 - 30781956
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| ||||||| ||||||||||||||||||||||||||||  ||||| |||||||    
T  30782011 ggaacttgaaatcaattttcttcactttgtattgtcttcaacaaccttttaagaac 30781956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 9328405 - 9328363
Alignment:
Q  272 aattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||||||||||||| |||||||||||||| |||||||||||||    
T  9328405 aattttcttcacttagtattgtcttcaaaaaccttctaagaac 9328363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 9252486 - 9252524
Alignment:
Q  272 aattttcttcactttgtattgtcttcaaagaccttctaa 310  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  9252486 aattttcttcacttagtattgtcttcaaaaaccttctaa 9252524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 9353250 - 9353209
Alignment:
Q  272 aattttcttcactttgtattgtcttcaaagaccttctaagaa 313  Q
    |||||||||||||| ||||| |||||||| ||||||||||||    
T  9353250 aattttcttcacttagtattttcttcaaaaaccttctaagaa 9353209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 15416765 - 15416818
Alignment:
Q  206 aattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttg 259  Q
    ||||||||||||||    ||||||||||||||| |||||||||| |||||||||    
T  15416765 aattttgttgtttttcgtcctttttcgagcattcttccgtcttgaaatgccttg 15416818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 23223665 - 23223624
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaa 300  Q
    |||| ||||||| |||||| ||||||||||||||||||||||    
T  23223665 ggaacttgaaatgaatttttttcactttgtattgtcttcaaa 23223624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 314
Target Start/End: Complemental strand, 25374011 - 25373942
Alignment:
Q  245 tcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||| ||||| || ||| ||||||| |||||||||||  |||||||||||| ||  |||||||||||||    
T  25374011 tcttgaaatgcttttgaacttgaaatgaattttcttcatcttgtattgtcttaaacaaccttctaagaac 25373942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 200 - 314
Target Start/End: Complemental strand, 18819011 - 18818898
Alignment:
Q  200 tgtgcaaattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaa 299  Q
    ||||| |||||||  |||||| ||||||||| ||||||| ||||||||||||||| ||||||| ||||| | ||||||||||||||||||||||||||||    
T  18819011 tgtgcgaattttgcagttttcatcccttttt-gagcattcttccgtcttgcaatgtcttggaacttgaattgaattttcttcactttgtattgtcttcaa 18818913  T
Q  300 agaccttctaagaac 314  Q
    |||||||||||||||    
T  18818912 agaccttctaagaac 18818898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 206 - 314
Target Start/End: Original strand, 18236113 - 18236221
Alignment:
Q  206 aattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagacct 305  Q
    |||||||| |||||  |||||||||||| |||| |||||||||  |||||||| ||| ||||||| |||||||||||  |||||||||||||||  ||||    
T  18236113 aattttgtagttttagtccctttttcgatcattcttccgtctttaaatgcctttgaacttgaaatgaattttcttcatcttgtattgtcttcaacaacct 18236212  T
Q  306 tctaagaac 314  Q
    |||||||||    
T  18236213 tctaagaac 18236221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 314
Target Start/End: Original strand, 17414945 - 17415082
Alignment:
Q  177 ggtgcgcttatggcagcccatcatgtgcaaattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattt 276  Q
    ||||||||| || || ||| || ||||| |||| ||| |||||  ||||||||| |||| || ||||||||||||||| ||| ||| ||||||| |||||    
T  17414945 ggtgcgcttttgacatcccctcctgtgcgaattatgtagtttttgtcccttttttgagcgttcttccgtcttgcaatgtcttagaacttgaaatgaattt 17415044  T
Q  277 tcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||||||||| | ||||||||||| | || ||||||||    
T  17415045 tcttcactttttgttgtcttcaaataactcctaagaac 17415082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 206 - 296
Target Start/End: Complemental strand, 19541340 - 19541250
Alignment:
Q  206 aattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtctt 296  Q
    |||||||| |||||  ||||||||||||||||||||| ||||||||||||||  ||| ||||||| ||  ||||| |||||||||||||||    
T  19541340 aattttgtagtttttgtccctttttcgagcatttttctgtcttgcaatgcctatgaacttgaaatgaagattcttaactttgtattgtctt 19541250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 22525678 - 22525738
Alignment:
Q  254 gccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||||| || ||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  22525678 gccttgaaacttgaaataaattttcttcactttgtgttgtcttcaaataccttctaagaac 22525738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 314
Target Start/End: Original strand, 14921866 - 14921957
Alignment:
Q  223 ccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||||| ||| || ||| ||||||  |||||||||||||| |||| | |||||||||||||||||||||| || | |||||||||||||    
T  14921866 ccctttttcaagcgttcttctgtcttgtgatgccttggaaattcaaatgatttttcttcactttgtattgtctacatataccttctaagaac 14921957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 34063671 - 34063745
Alignment:
Q  226 tttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaa 300  Q
    |||||| ||| || ||||||||  ||||||||||||| || |||| |||||||||||||||||||||||||||||    
T  34063671 tttttctagcgttcttccgtctcacaatgccttggaacttcaaatgaattttcttcactttgtattgtcttcaaa 34063745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 16593614 - 16593669
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| ||||||| ||||||||||||||||||||||||||||  |||||||||||||    
T  16593614 ggaacttgaaatgaattttcttcactttgtattgtcttcaacaaccttctaagaac 16593669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 27417122 - 27417181
Alignment:
Q  255 ccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||||||| ||||||| |||||||||||||||||||||| |||||| ||||||| |||||    
T  27417122 ccttggaacttgaaatgaattttcttcactttgtattgttttcaaaaaccttcttagaac 27417181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 1732814 - 1732748
Alignment:
Q  247 ttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaa 313  Q
    ||||||||| |||||| |||||||||||||| |||| ||||||||| ||||||| |  |||||||||    
T  1732814 ttgcaatgcgttggaacttgaaataaattttattcattttgtattgccttcaaatatattctaagaa 1732748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 30999017 - 30998967
Alignment:
Q  264 ttgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||| |||||||| |||||||||||||||||||  |||||||||||||    
T  30999017 ttgaaatgaattttctccactttgtattgtcttcaacaaccttctaagaac 30998967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 25474282 - 25474233
Alignment:
Q  265 tgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||||| ||||||||||||||| ||||||||||||  |||||||||||||    
T  25474282 tgaaatgaattttcttcactttatattgtcttcaacaaccttctaagaac 25474233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 32619864 - 32619819
Alignment:
Q  271 aaattttcttcactttgtattgtcttcaaagaccttctaagaactt 316  Q
    ||||||| |||||||||||||||||||||| ||||||| |||||||    
T  32619864 aaattttattcactttgtattgtcttcaaaaaccttcttagaactt 32619819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 313
Target Start/End: Complemental strand, 35708049 - 35708000
Alignment:
Q  264 ttgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaa 313  Q
    |||||||||||||| |||| ||||||||||||||||  ||||||||||||    
T  35708049 ttgaaataaattttgttcattttgtattgtcttcaacaaccttctaagaa 35708000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 21505002 - 21505057
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| ||||||| |||||||||||  |||||||||||||||| ||||||| |||||    
T  21505002 ggaatttgaaatgaattttcttcaacttgtattgtcttcaaaaaccttctcagaac 21505057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 312
Target Start/End: Complemental strand, 24188238 - 24188167
Alignment:
Q  241 tccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaaga 312  Q
    |||||||| | | ||||||| | ||| ||| ||| ||||||||||||||||||||||||| || ||||||||    
T  24188238 tccgtctttccaggccttggcacttggaatgaatcttcttcactttgtattgtcttcaaaaactttctaaga 24188167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 31274194 - 31274152
Alignment:
Q  272 aattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||||||||||  || |||||||||||||||||||||||||||    
T  31274194 aattttcttcaacttatattgtcttcaaagaccttctaagaac 31274152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 314
Target Start/End: Complemental strand, 17862719 - 17862606
Alignment:
Q  201 gtgcaaattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaa 300  Q
    ||||||||||||  |||||  |||||||||||||| |||||||| | || |||| ||||||| |||  || |||||||  ||  ||||| ||||||||||    
T  17862719 gtgcaaattttgcagtttttgtccctttttcgagcgtttttccgccatgaaatgtcttggaacttgggatgaattttccccaacttgtactgtcttcaaa 17862620  T
Q  301 gaccttctaagaac 314  Q
     |  ||||||||||    
T  17862619 aaaattctaagaac 17862606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 31262241 - 31262193
Alignment:
Q  266 gaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||| |||||||||||  || |||||||||||||||||| ||||||||    
T  31262241 gaaatgaattttcttcaacttatattgtcttcaaagacctactaagaac 31262193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 197 - 314
Target Start/End: Original strand, 26499649 - 26499765
Alignment:
Q  197 tcatgtgcaaattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtctt 296  Q
    ||||||||||||||||  |||||| | | |||||||||| || |||||||||||||||||||| || ||||||| ||||||||| |||||||||||||||    
T  26499649 tcatgtgcaaattttgcagttttcgttc-tttttcgagcgttgttccgtcttgcaatgccttgaaacttgaaatgaattttctttactttgtattgtctt 26499747  T
Q  297 caaagaccttctaagaac 314  Q
    |||| |||||||||||||    
T  26499748 caaaaaccttctaagaac 26499765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 15575175 - 15575120
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  15575175 ggaacttgaaatgaattttcttcactttgtattgtcttcaacgaccttctaagaac 15575120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 202 - 293
Target Start/End: Original strand, 17198628 - 17198719
Alignment:
Q  202 tgcaaattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgt 293  Q
    |||||||||||| |||||  |  |||||||||||  | ||| ||||||||||||||||||| || ||||||||||| |||||||||||||||    
T  17198628 tgcaaattttgtagtttttatttctttttcgagcgatcttctgtcttgcaatgccttggaactttaaataaattttattcactttgtattgt 17198719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 199 - 314
Target Start/End: Original strand, 26512582 - 26512697
Alignment:
Q  199 atgtgcaaattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttca 298  Q
    ||||||||||||||| |||||| ||| |||| ||||| ||||||| ||||| ||||||||| || |||| || ||||||  |||  ||||||||| ||||    
T  26512582 atgtgcaaattttgtagttttcatccattttccgagcgtttttccttcttgaaatgccttgaaacttgagatgaatttttatcatcttgtattgtgttca 26512681  T
Q  299 aagaccttctaagaac 314  Q
     ||||||| |||||||    
T  26512682 cagaccttttaagaac 26512697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 199 - 314
Target Start/End: Original strand, 26517698 - 26517813
Alignment:
Q  199 atgtgcaaattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttca 298  Q
    ||||||||||||||| |||||| ||| |||| ||||| ||||||| ||||| ||||||||| || |||| || ||||||  |||  ||||||||| ||||    
T  26517698 atgtgcaaattttgtagttttcatccattttccgagcgtttttccttcttgaaatgccttgaaacttgagatgaatttttatcatcttgtattgtgttca 26517797  T
Q  299 aagaccttctaagaac 314  Q
     ||||||| |||||||    
T  26517798 cagaccttttaagaac 26517813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 17860312 - 17860367
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| ||||||| |||||||||||||||||||||||| |||| |||||||||||||    
T  17860312 ggaacttgaaatgaattttcttcactttgtattgtctacaaaaaccttctaagaac 17860367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 24507301 - 24507345
Alignment:
Q  254 gccttggaaattgaaataaattttcttcactttgtattgtcttca 298  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||    
T  24507301 gccttggaacttgaaataaattttcttcactttgtattttcttca 24507345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 30355563 - 30355513
Alignment:
Q  264 ttgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||| |||||| |||||||| ||||||||||||| |||||||||||||    
T  30355563 ttgaaatgaattttattcactttttattgtcttcaaaaaccttctaagaac 30355513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 280
Target Start/End: Original strand, 12972214 - 12972269
Alignment:
Q  225 ctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttctt 280  Q
    |||||||||||||| |||||||||||||||||||| || || |||| |||| ||||    
T  12972214 ctttttcgagcattcttccgtcttgcaatgccttgaaagtttaaatgaattgtctt 12972269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 314
Target Start/End: Original strand, 33638380 - 33638423
Alignment:
Q  271 aaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||| ||||||||||||| |||||||||||||| |||||||    
T  33638380 aaattttattcactttgtattatcttcaaagaccttataagaac 33638423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 33638324 - 33638282
Alignment:
Q  272 aattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||||| ||||||||||||| |||||||||||||| |||||||    
T  33638324 aattttattcactttgtattatcttcaaagaccttataagaac 33638282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 312
Target Start/End: Complemental strand, 15998761 - 15998708
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaaga 312  Q
    |||| ||||||| ||||| |||||||||||||||||| |||  |||||||||||    
T  15998761 ggaacttgaaatgaatttgcttcactttgtattgtctacaacaaccttctaaga 15998708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 206 - 314
Target Start/End: Original strand, 31859711 - 31859819
Alignment:
Q  206 aattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagacct 305  Q
    |||||||  |||||| ||| ||||||  || || |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  31859711 aattttgcagttttcgtccttttttcacgcgttcttccgtcttgaaatgccttggaacttgaaataaattttcttcactttgtattgtcttcaaatacct 31859810  T
Q  306 tctaagaac 314  Q
    |||||||||    
T  31859811 tctaagaac 31859819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 226 - 310
Target Start/End: Complemental strand, 23353902 - 23353818
Alignment:
Q  226 tttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaa 310  Q
    |||||||||| |||||| || |||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||    
T  23353902 tttttcgagcgtttttctgttttgcaatgccttggaacttgaaatgaattttcttcactttgtattgtcttaaaagaccttctaa 23353818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 17187448 - 17187369
Alignment:
Q  235 catttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||||||||||||||||||| |||| || ||||||| ||||||||| ||||||||||||||||||| | |||||||||||    
T  17187448 catttttccgtcttgcaatgtcttgaaacttgaaatgaattttctttactttgtattgtcttcaaataacttctaagaac 17187369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 33519324 - 33519226
Alignment:
Q  216 ttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||| ||| |||||| ||| || ||| |||| | |||||||||||| ||||||| |||||||||||  ||||||||||||||||||||||||||||||    
T  33519324 ttttcgtccatttttcaagcgttcttctgtctggaaatgccttggaatttgaaatgaattttcttcaacttgtattgtcttcaaagaccttctaagaac 33519226  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 18444541 - 18444454
Alignment:
Q  199 atgtgcaaattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcacttt 286  Q
    |||| |||||||||  |||||| |||||||||||||  || |||||||||||||||||||| |||  ||||| |||||||||||||||    
T  18444541 atgtacaaattttgcagttttcatccctttttcgagtgttcttccgtcttgcaatgccttgaaaaacgaaatgaattttcttcacttt 18444454  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 215 - 314
Target Start/End: Complemental strand, 22119915 - 22119817
Alignment:
Q  215 gttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||||| | |||||||||||| || ||||||||||||||| ||||||| ||||||| |||||| | |||||| ||||||| ||||| ||| |||||||||    
T  22119915 gttttcgttcctttttcgagcgttcttccgtcttgcaatgacttggaacttgaaattaattttgtacacttt-tattgtcctcaaaaaccctctaagaac 22119817  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 314
Target Start/End: Complemental strand, 21077542 - 21077429
Alignment:
Q  200 tgtgcaaattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaa 299  Q
    ||||| |||||||  |||||| | ||||||| ||| ||| |||| |||| ||||||||||||| ||||||| |||||| |||| |||||||||||||| |    
T  21077542 tgtgcgaattttgcagttttcgtaccttttt-gagtattcttccatctttcaatgccttggaacttgaaatgaattttattcaatttgtattgtcttcga 21077444  T
Q  300 agaccttctaagaac 314  Q
      |||||||||||||    
T  21077443 ttaccttctaagaac 21077429  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 4733039 - 4732954
Alignment:
Q  227 ttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaaga 312  Q
    |||| |||| || ||| |||||| ||||||||| || ||||||| |||||||||||  |||||||||||| |||||||||||||||    
T  4733039 tttttgagcgttcttctgtcttgaaatgccttgaaatttgaaatgaattttcttcaacttgtattgtctttaaagaccttctaaga 4732954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 310
Target Start/End: Original strand, 10320084 - 10320135
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaa 310  Q
    |||| |||||||||||||||||||||||||||||| ||| ||||||||||||    
T  10320084 ggaacttgaaataaattttcttcactttgtattgttttcgaagaccttctaa 10320135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 226 - 302
Target Start/End: Complemental strand, 29437745 - 29437669
Alignment:
Q  226 tttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaaga 302  Q
    |||||| ||| || ||| ||||||| ||||||||||| || |||| || ||||||||||||||||||||||| ||||    
T  29437745 tttttcaagcgttcttctgtcttgcgatgccttggaacttcaaatgaagtttcttcactttgtattgtcttctaaga 29437669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 17026560 - 17026615
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| ||||||| ||||||||||||||||||||||||||||| || || |||||||    
T  17026560 ggaacttgaaattaattttcttcactttgtattgtcttcaaaaactttttaagaac 17026615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 47024629 - 47024684
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| |||||||||||| ||||||||||||| ||| |||||| |||||||||||||    
T  47024629 ggaacttgaaataaattctcttcactttgtactgttttcaaaaaccttctaagaac 47024684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 1695710 - 1695764
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaa 313  Q
    |||| ||||||| |||||| |||||||||||||||||||||  ||||||||||||    
T  1695710 ggaacttgaaatgaattttattcactttgtattgtcttcaacaaccttctaagaa 1695764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 5906631 - 5906681
Alignment:
Q  264 ttgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||| ||||||||| |||||||||| |||||||| |||||||||||||    
T  5906631 ttgaaatgaattttcttaactttgtattatcttcaaaaaccttctaagaac 5906681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 314
Target Start/End: Complemental strand, 13064696 - 13064622
Alignment:
Q  240 ttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||||||  |||| |||||| ||||||| || ||| ||||||||| |||||||||||| ||| |||||||||    
T  13064696 ttccgtcttgtgatgcattggaacttgaaatcaaatttgttcactttgaattgtcttcaaataccctctaagaac 13064622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 20985224 - 20985297
Alignment:
Q  227 ttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaa 300  Q
    ||||| ||| |||||||||| |||| || |||| || || |||| | |||||||||||||||||||||||||||    
T  20985224 ttttcaagcgtttttccgtcatgcattgtcttgaaatttcaaatgagttttcttcactttgtattgtcttcaaa 20985297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 314
Target Start/End: Complemental strand, 15192499 - 15192399
Alignment:
Q  214 tgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaa 313  Q
    ||||||| |||| ||||||| | || ||||||||   ||  ||| |||| ||||||| |||| ||||||||||| |||||||||||  ||||||||||||    
T  15192499 tgttttcgtcccgttttcgatcgttcttccgtctaaaaactcctaggaacttgaaatgaattgtcttcactttgaattgtcttcaacaaccttctaagaa 15192400  T
Q  314 c 314  Q
    |    
T  15192399 c 15192399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 314
Target Start/End: Complemental strand, 27303073 - 27302973
Alignment:
Q  214 tgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaa 313  Q
    ||||||| |||| ||||||| | || ||||||||   ||  ||| |||| || |||| ||||||||||||||| || |||||||||| ||||||||||||    
T  27303073 tgttttcgtcccgttttcgatcgttcttccgtctgaaaactcctaggaacttaaaatgaattttcttcactttataatgtcttcaaaaaccttctaagaa 27302974  T
Q  314 c 314  Q
    |    
T  27302973 c 27302973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 313
Target Start/End: Complemental strand, 5676444 - 5676397
Alignment:
Q  266 gaaataaattttcttcactttgtattgtcttcaaagaccttctaagaa 313  Q
    ||||| |||||||||||  |||||||||||||||| ||||||||||||    
T  5676444 gaaatgaattttcttcatcttgtattgtcttcaaaaaccttctaagaa 5676397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 18898233 - 18898178
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| ||||||| ||||||||| |||||||||||| |||||| ||||| |||||||    
T  18898233 ggaacttgaaatgaattttctttactttgtattgtattcaaaaaccttttaagaac 18898178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 314
Target Start/End: Original strand, 34864167 - 34864214
Alignment:
Q  267 aaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| ||||||||||| |||||||||||| |||| |||||||||||||    
T  34864167 aaatgaattttcttcattttgtattgtctacaaaaaccttctaagaac 34864214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 12111196 - 12111246
Alignment:
Q  264 ttgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||| |||||||||||||||||||| |||| ||| ||||| |||||||    
T  12111196 ttgaaatgaattttcttcactttgtattatcttaaaaaaccttataagaac 12111246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 314
Target Start/End: Complemental strand, 19602052 - 19601994
Alignment:
Q  256 cttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||||||  |||||| |||||||| |||||| ||||||||||||| ||||| |||||||    
T  19602052 cttggaacatgaaatgaattttctccactttttattgtcttcaaaaaccttttaagaac 19601994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 312
Target Start/End: Complemental strand, 51884853 - 51884800
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaaga 312  Q
    |||| ||||||| |||||||||||||||||||||| |||||  | |||||||||    
T  51884853 ggaacttgaaattaattttcttcactttgtattgtattcaacaatcttctaaga 51884800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 19542971 - 19543043
Alignment:
Q  243 cgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaact 315  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  19542971 cgtcttgcaatgccttggaacttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagaact 19543043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 18474437 - 18474369
Alignment:
Q  243 cgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaag 311  Q
    ||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  18474437 cgtcttgcaatgcattggaacttgaaatgaattttcttcactttgtattgtcttcaaataccttctaag 18474369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 314
Target Start/End: Original strand, 19219071 - 19219129
Alignment:
Q  256 cttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||| ||||||| |||||| |||||||||||||||||||||| |||||||||||||    
T  19219071 cttggaatttgaaatgaattttattcactttgtattgtcttcaaaaaccttctaagaac 19219129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 1475143 - 1475199
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaact 315  Q
    |||| |||||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  1475143 ggaacttgaaataaattttcttcactttgtattatcttcaataaccttctaagaact 1475199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 25883354 - 25883299
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| ||||||| ||||||||||||||||||||||||||||  |||||||||||||    
T  25883354 ggaacttgaaatgaattttcttcactttgtattgtcttcaacaaccttctaagaac 25883299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 5632395 - 5632461
Alignment:
Q  248 tgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||||||||||| ||||||| ||||||||||| ||| |||| |||||||| ||||| |||||||    
T  5632395 tgcaatgccttggaacttgaaatgaattttcttcaatttttattatcttcaaataccttataagaac 5632461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 314
Target Start/End: Complemental strand, 11475156 - 11475043
Alignment:
Q  206 aattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttctt-----cactttgtattgtcttcaaa 300  Q
    |||||||  |||||| |||||||||  ||| || ||||||||||||| ||||||||| ||||||| | |||| ||     ||||||||||||||||||||    
T  11475156 aattttgcagttttcgtccctttttttagcgttcttccgtcttgcaacgccttggaacttgaaatgatttttttttttttcactttgtattgtcttcaaa 11475057  T
Q  301 gaccttctaagaac 314  Q
     | |||||||||||    
T  11475056 tatcttctaagaac 11475043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 314
Target Start/End: Complemental strand, 10342083 - 10341983
Alignment:
Q  214 tgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaa 313  Q
    |||||||| ||| ||||||| | || |||||||| | ||  ||| |||| ||||||| | ||||  ||||||||||||||||||||| ||||||||||||    
T  10342083 tgttttctccccgttttcgatcgttcttccgtctagaaactcctaggaacttgaaatgagtttttctcactttgtattgtcttcaaaaaccttctaagaa 10341984  T
Q  314 c 314  Q
    |    
T  10341983 c 10341983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 310
Target Start/End: Complemental strand, 12573536 - 12573490
Alignment:
Q  264 ttgaaataaattttcttcactttgtattgtcttcaaagaccttctaa 310  Q
    ||||||||||||||||||||| ||||||||||||||  |||||||||    
T  12573536 ttgaaataaattttcttcactgtgtattgtcttcaacaaccttctaa 12573490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 310
Target Start/End: Complemental strand, 13550000 - 13549954
Alignment:
Q  264 ttgaaataaattttcttcactttgtattgtcttcaaagaccttctaa 310  Q
    ||||||||||||||||||||| ||||||||||||||  |||||||||    
T  13550000 ttgaaataaattttcttcactgtgtattgtcttcaacaaccttctaa 13549954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 306
Target Start/End: Original strand, 8402361 - 8402461
Alignment:
Q  206 aattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagacct 305  Q
    |||||||  |||||| |||| |||||   |||| |||| |||||||||| | ||||| ||||||| ||| ||||||||||| |||| |||||||| ||||    
T  8402361 aattttgcagttttcgtcccattttctcacattcttccatcttgcaatgtcatggaacttgaaatgaatgttcttcactttatattttcttcaaatacct 8402460  T
Q  306 t 306  Q
    |    
T  8402461 t 8402461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 310
Target Start/End: Complemental strand, 11521460 - 11521365
Alignment:
Q  215 gttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaa 310  Q
    ||||||||||| ||||||| | || ||||||||   ||  ||| |||| ||||||| |||||||||| ||||||||| |||||||  |||||||||    
T  11521460 gttttcttcccgttttcgatcgttcttccgtctgaaaactcctaggaacttgaaatgaattttcttcgctttgtattatcttcaacaaccttctaa 11521365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 16970704 - 16970658
Alignment:
Q  268 aataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||||||||||||||  ||||||| |||||||| |||||||||||||    
T  16970704 aataaattttcttcatcttgtattttcttcaaaaaccttctaagaac 16970658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 18066048 - 18066007
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaa 300  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  18066048 ggaagttgaaatgaattttcttcactttgtattttcttcaaa 18066007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 28422685 - 28422652
Alignment:
Q  277 tcttcactttgtattgtcttcaaagaccttctaa 310  Q
    |||||||||||||||||||||||| |||||||||    
T  28422685 tcttcactttgtattgtcttcaaataccttctaa 28422652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 19263772 - 19263804
Alignment:
Q  264 ttgaaataaattttcttcactttgtattgtctt 296  Q
    ||||||| |||||||||||||||||||||||||    
T  19263772 ttgaaatgaattttcttcactttgtattgtctt 19263804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 188 - 307
Target Start/End: Complemental strand, 5154080 - 5153961
Alignment:
Q  188 ggcagcccatcatgtgcaaattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttg 287  Q
    |||||||| | ||||| ||||||||  |||||| ||||||||||||||||| ||||||||||||||| ||||||| ||||||| |||||| ||||  ||     
T  5154080 ggcagccccttatgtgtaaattttgcagttttcgtccctttttcgagcattcttccgtcttgcaatgtcttggaacttgaaatgaattttattcatgtta 5153981  T
Q  288 tattgtcttcaaagaccttc 307  Q
    ||||||||||||| ||||||    
T  5153980 tattgtcttcaaaaaccttc 5153961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 201 - 315
Target Start/End: Original strand, 27097607 - 27097721
Alignment:
Q  201 gtgcaaattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaa 300  Q
    |||| |||||||  |||||| || |||||| |||  || ||||||||||||||||||||||| ||||| | |||||||||||  ||||||||||||||||    
T  27097607 gtgcgaattttgcggttttcatctcttttttgagtgttcttccgtcttgcaatgccttggaacttgaattgaattttcttcaacttgtattgtcttcaaa 27097706  T
Q  301 gaccttctaagaact 315  Q
    |||||||||||||||    
T  27097707 gaccttctaagaact 27097721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 201 - 314
Target Start/End: Original strand, 28291906 - 28292019
Alignment:
Q  201 gtgcaaattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaa 300  Q
    ||||||||||||  |||||| || |||||| |||  ||| ||| |||||||||| ||||||| |||||||  |||||||||| |||||||||||||||||    
T  28291906 gtgcaaattttgcagttttcatctcttttttgagtgtttgtccatcttgcaatggcttggaacttgaaatttattttcttcattttgtattgtcttcaaa 28292005  T
Q  301 gaccttctaagaac 314  Q
    ||||||||||||||    
T  28292006 gaccttctaagaac 28292019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 29292064 - 29291966
Alignment:
Q  216 ttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||| ||||||||||| || || |||||||||||||||  |||||| ||||||| |||||| |||||||| | |||||||||||||||||||||||||    
T  29292064 ttttcgtccctttttcgtgcgttcttccgtcttgcaatgaattggaatttgaaatgaatttttttcactttctgttgtcttcaaagaccttctaagaac 29291966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 30850949 - 30851018
Alignment:
Q  245 tcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||||||||| ||||||| ||||||| |||||||||||||||||||| | ||||||||| ||||||||||    
T  30850949 tcttgcaatgacttggaacttgaaattaattttcttcactttgtattatattcaaagacattctaagaac 30851018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 314
Target Start/End: Complemental strand, 11437730 - 11437616
Alignment:
Q  200 tgtgcaaattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaa 299  Q
    |||||||||| ||| ||||||   |||||||| ||  || |||||||||||||||| |||||| || |||| |||| |||||||| ||||||||||||||    
T  11437730 tgtgcaaattctgtagttttcgatcctttttcaagtgttcttccgtcttgcaatgctttggaacttcaaatgaattatcttcactctgtattgtcttcaa 11437631  T
Q  300 agaccttctaagaac 314  Q
    |   |||||||||||    
T  11437630 atgtcttctaagaac 11437616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 188 - 314
Target Start/End: Original strand, 13583308 - 13583438
Alignment:
Q  188 ggcagcccatcatgtgcaaattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaa----ttttcttcac 283  Q
    |||||||| |||||||| |||| ||| ||||||   | |||||| ||| || |||||||||||||| |||||||| || |||| ||    |||| |||||    
T  13583308 ggcagcccctcatgtgcgaattatgtagttttcgatcttttttccagcgttcttccgtcttgcaataccttggaacttcaaatgaatttttttttttcac 13583407  T
Q  284 tttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||||||||||||| | |||||||||||    
T  13583408 tttgtattgtcttcaaatatcttctaagaac 13583438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 30544037 - 30543976
Alignment:
Q  235 catttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtctt 296  Q
    |||| ||||| ||||||||||||||||| ||||||| ||||||||||||||| |||||||||    
T  30544037 cattcttccgccttgcaatgccttggaacttgaaatgaattttcttcactttatattgtctt 30543976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 31436735 - 31436675
Alignment:
Q  244 gtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagacct 305  Q
    ||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| ||||    
T  31436735 gtcttgcaatgccttggaacttgaaataattttt-ttcactttgtattgtcttcaaatacct 31436675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 223 - 296
Target Start/End: Complemental strand, 32239575 - 32239502
Alignment:
Q  223 ccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtctt 296  Q
    ||||||||||  | |||||| |||||||||||||||| || ||||||| ||||||||||||||| |||||||||    
T  32239575 ccctttttcgcccgtttttctgtcttgcaatgccttgaaacttgaaatgaattttcttcactttttattgtctt 32239502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 16052140 - 16052194
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaa 313  Q
    |||| ||||||| ||||||||||| ||||||||||||||||| ||||||||||||    
T  16052140 ggaacttgaaatgaattttcttcattttgtattgtcttcaaaaaccttctaagaa 16052194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 16054545 - 16054490
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| ||||||| |||||||||||||||||||| |||||||  |||||||||||||    
T  16054545 ggaacttgaaatgaattttcttcactttgtattttcttcaacaaccttctaagaac 16054490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 22894391 - 22894450
Alignment:
Q  255 ccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||||||| || |||  ||||||||||||||||||||||||||||| ||| |||||||||    
T  22894391 ccttggaacttcaaaagaattttcttcactttgtattgtcttcaaaaaccatctaagaac 22894450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 11310120 - 11310173
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaa 313  Q
    |||| ||||||||| |||||||||||||||||||| |||||| ||||||||||||    
T  11310120 ggaacttgaaataa-ttttcttcactttgtattgttttcaaaaaccttctaagaa 11310173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 12357762 - 12357696
Alignment:
Q  227 ttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgt 293  Q
    |||||||||||| || | ||||  |||||||||||| ||||||| ||||||||||||||| ||||||    
T  12357762 ttttcgagcattctttcctcttataatgccttggaatttgaaatgaattttcttcactttttattgt 12357696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 12358890 - 12358824
Alignment:
Q  227 ttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgt 293  Q
    |||||||||||| || | ||||  |||||||||||| ||||||| ||||||||||||||| ||||||    
T  12358890 ttttcgagcattctttcctcttataatgccttggaatttgaaatgaattttcttcactttttattgt 12358824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 13081803 - 13081853
Alignment:
Q  264 ttgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||| ||||||||||| ||||||||||||||||  |||||||||||||    
T  13081803 ttgaaatgaattttcttcattttgtattgtcttcaacaaccttctaagaac 13081853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 28901218 - 28901268
Alignment:
Q  264 ttgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||| ||||||||||||||||||||||||||| | ||||| |||||||    
T  28901218 ttgaaatgaattttcttcactttgtattgtcttcagaaaccttataagaac 28901268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 314
Target Start/End: Original strand, 14424639 - 14424731
Alignment:
Q  222 tccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||||| |||  || ||||||||||||||  ||| ||| |  |||| |||||||||||| ||| ||||| |||||| |||||||||||||    
T  14424639 tcccttttttgagagttcttccgtcttgcaatatcttagaactataaatgaattttcttcacattgaattgtgttcaaaaaccttctaagaac 14424731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 314
Target Start/End: Complemental strand, 28902332 - 28902285
Alignment:
Q  267 aaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| |||||| |||||||||||||||||||||  |||||||||||||    
T  28902332 aaatgaattttattcactttgtattgtcttcaataaccttctaagaac 28902285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 240 - 314
Target Start/End: Original strand, 228031 - 228105
Alignment:
Q  240 ttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  228031 ttccgtcttgcaatgtcttggaacttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagaac 228105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 213 - 313
Target Start/End: Original strand, 11516 - 11615
Alignment:
Q  213 ttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaaga 312  Q
    |||||||| | ||||||| |||||||  |||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  11516 ttgttttcattccttttttgagcattcatccgtcttgcaatgccttggac-ttgaaatgaattttcttcactttgtattgtcttcaaataccttataaga 11614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 202 - 314
Target Start/End: Original strand, 8308843 - 8308954
Alignment:
Q  202 tgcaaattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaag 301  Q
    |||||||||||  |||||| ||||||||| |||| || |||||||||||||| |||||||| |||| || ||| ||||| | ||||||||||||||||||    
T  8308843 tgcaaattttgcagttttcctcccttttt-gagcgttcttccgtcttgcaataccttggaacttgatatgaatcttctttattttgtattgtcttcaaag 8308941  T
Q  302 accttctaagaac 314  Q
    |||||||||||||    
T  8308942 accttctaagaac 8308954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 234 - 300
Target Start/End: Original strand, 24596842 - 24596908
Alignment:
Q  234 gcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaa 300  Q
    ||||| || |||||||||||||||||||| || |||| |||||||||||||||||||||||||||||    
T  24596842 gcattctttcgtcttgcaatgccttggaacttcaaatgaattttcttcactttgtattgtcttcaaa 24596908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 7494942 - 7494892
Alignment:
Q  264 ttgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  7494942 ttgaaataaattttcttcactttgtattgtcttcatggaccttctaagaac 7494892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 29544771 - 29544717
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaa 313  Q
    |||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  29544771 ggaacttgaaatgaattttcttcactttgtattgtcttcaaaaaccttctaagaa 29544717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 7372410 - 7372484
Alignment:
Q  237 tttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaaga 312  Q
    ||||||| ||||||||||||||  || |||||||||||||||||||| |||||||||||| ||| | |||||||||    
T  7372410 tttttccctcttgcaatgccttataacttgaaataaattttcttcac-ttgtattgtctttaaaaatcttctaaga 7372484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 18496852 - 18496761
Alignment:
Q  223 ccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||||||| | || || ||||||| |||||||||||| ||||||| |||||||||||  ||||||| |||||||  || ||||||||||    
T  18496852 ccctttttcgaccgttcttacgtcttgaaatgccttggaacttgaaatgaattttcttcatcttgtattttcttcaacaacattctaagaac 18496761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 20017204 - 20017149
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| ||||||| ||||||||||||||||||||||||||||  |||||||||||||    
T  20017204 ggaacttgaaatgaattttcttcactttgtattgtcttcaagaaccttctaagaac 20017149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 4829043 - 4828986
Alignment:
Q  255 ccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaaga 312  Q
    |||||||| ||||||| |||| |||||||||||||||||||||||| | |||||||||    
T  4829043 ccttggaacttgaaatgaattatcttcactttgtattgtcttcaaataacttctaaga 4828986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 314
Target Start/End: Complemental strand, 1074723 - 1074649
Alignment:
Q  240 ttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||||||||| |||| ||||||| ||||||| | |||||||||  |||||||||||||||  ||||| |||||||    
T  1074723 ttccgtcttgaaatgtcttggaacttgaaattacttttcttcatcttgtattgtcttcaacaaccttttaagaac 1074649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 20470678 - 20470728
Alignment:
Q  264 ttgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||| ||||||||||| ||||||||||||||||  |||||||||||||    
T  20470678 ttgaaatcaattttcttcattttgtattgtcttcaagaaccttctaagaac 20470728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 21545695 - 21545745
Alignment:
Q  264 ttgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||| ||||||||||||||| ||||||||||||| || ||||||||||    
T  21545695 ttgaaatgaattttcttcactttttattgtcttcaaatactttctaagaac 21545745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 315424 - 315368
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaact 315  Q
    |||| ||||||| |||||| |||||||||||||||||||||  |||||| |||||||    
T  315424 ggaacttgaaatgaattttattcactttgtattgtcttcaacaaccttcaaagaact 315368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 308
Target Start/End: Complemental strand, 7815569 - 7815525
Alignment:
Q  264 ttgaaataaattttcttcactttgtattgtcttcaaagaccttct 308  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||    
T  7815569 ttgaaatgaattttcttcactttgtattgtcttcaacaaccttct 7815525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 9801738 - 9801793
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| ||||||||||||||| |||||||||||| |||| ||| ||||| |||||||    
T  9801738 ggaacttgaaataaattttcctcactttgtattttctttaaaaaccttttaagaac 9801793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 22067666 - 22067721
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| ||||||| |||| | |||||||||||||||||||||  |||||||||||||    
T  22067666 ggaacttgaaatgaattcttttcactttgtattgtcttcaacaaccttctaagaac 22067721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 3487212 - 3487266
Alignment:
Q  240 ttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtctt 296  Q
    ||||||||||||||| ||||||| || |||| ||||  |||||||||||||||||||    
T  3487212 ttccgtcttgcaatgtcttggaacttcaaatgaatt--cttcactttgtattgtctt 3487266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 23125152 - 23125115
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtctt 296  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  23125152 ggaatttgaaatgaattttcttcactttgtattgtctt 23125115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 313
Target Start/End: Complemental strand, 30405852 - 30405791
Alignment:
Q  252 atgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaa 313  Q
    ||||||||||| || |||  |||| | ||||||||||||||| |||||| ||||||||||||    
T  30405852 atgccttggaatttcaaacgaattgtattcactttgtattgtattcaaataccttctaagaa 30405791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 20446438 - 20446398
Alignment:
Q  274 ttttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| |||||||||||||||||||||  |||||||||||||    
T  20446438 tttttttcactttgtattgtcttcaacaaccttctaagaac 20446398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 222 - 314
Target Start/End: Original strand, 19763712 - 19763804
Alignment:
Q  222 tccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||||||||||||| || |||| |||| |||| | |||||| ||||||| |||||||||||||||||||| |||||||| |||||||||||||    
T  19763712 tccctttttcgagcgttcttccatctttcaatcctttggaacttgaaatgaattttcttcactttgtattatcttcaaaaaccttctaagaac 19763804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 172 - 314
Target Start/End: Original strand, 22643682 - 22643823
Alignment:
Q  172 gtgcaggtgcgcttatggcagcccatcatgtgcaaattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaata 271  Q
    ||||| |||||||| ||| ||||| |||||||| |||||||| |||||| | |||||| || |  || || ||||||||||| |||||||  |||||||     
T  22643682 gtgcatgtgcgcttctggaagcccctcatgtgcgaattttgtagttttcgttcctttt-cgcgtgttctttcgtcttgcaataccttggagtttgaaatg 22643780  T
Q  272 aattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||||||| |||||||||| |||||| ||||| |||||||    
T  22643781 aattttcttcagtttgtattgtattcaaataccttttaagaac 22643823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 17027778 - 17027724
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaa 313  Q
    |||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  17027778 ggaaattgaaattaattttcttcactttgtattgtcttcaagaaccttctaagaa 17027724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 18178395 - 18178298
Alignment:
Q  216 ttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||| ||||||||| |||| || |||||||||| || ||||||||| |||| || |||||| |||| |||||||| ||||||||||||||| ||||||    
T  18178395 ttttcgtcccttttttgagcgttcttccgtcttgaaa-gccttggaacttgagatgaattttattcaatttgtattatcttcaaagaccttccaagaac 18178298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 7742748 - 7742788
Alignment:
Q  274 ttttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7742748 ttttcttcactttgtattgtcttcaaagaccttctaagaac 7742788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 314
Target Start/End: Complemental strand, 20694975 - 20694836
Alignment:
Q  177 ggtgcgcttatggcagcccatcatgtgcaaattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataa--at 274  Q
    ||||||||| ||||||||  || ||||| |||||||  |||||| |||||||||||||| || ||||||| ||||||| ||| ||| ||| ||| |   |    
T  20694975 ggtgcgcttttggcagcctttcctgtgcgaattttgcagttttcgtccctttttcgagcgttcttccgtcgtgcaatggcttagaacttgcaatgatttt 20694876  T
Q  275 tttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||| ||  ||| |||||||||||||| |||||||||||||    
T  20694875 tttttttgcttggtattgtcttcaaataccttctaagaac 20694836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 191 - 291
Target Start/End: Original strand, 15695037 - 15695137
Alignment:
Q  191 agcccatcatgtgcaaattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtat 290  Q
    ||||| |||||||  |||| ||| |||||| ||||||||| ||||  | |||||| || |||||||||| || |||||||  ||||||||||||||||||    
T  15695037 agcccctcatgtgtgaattatgtagttttcgtcccttttttgagcgctattccgttttacaatgccttgaaacttgaaatgcattttcttcactttgtat 15695136  T
Q  291 t 291  Q
    |    
T  15695137 t 15695137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 20083772 - 20083700
Alignment:
Q  204 caaattttgttgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattt 276  Q
    |||||||||  |||||| ||||||||||||| ||| |||||||||||| |||||| ||| ||||| |||||||    
T  20083772 caaattttgcagttttcgtccctttttcgagtattcttccgtcttgcagtgccttagaacttgaactaaattt 20083700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 26329933 - 26329985
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaag 311  Q
    |||| ||||||| ||||||||||||||||||||||||| ||| ||||||||||    
T  26329933 ggaacttgaaatgaattttcttcactttgtattgtcttaaaaaaccttctaag 26329985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 310
Target Start/End: Original strand, 17695282 - 17695377
Alignment:
Q  215 gttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaa 310  Q
    |||||| |||||||||||||| || ||| |||||| |||||||||||| ||   || |||||||  ||  |||||||||||||||| |||||||||    
T  17695282 gttttcgtccctttttcgagcgttcttcggtcttgaaatgccttggaacttaggatgaattttccccaacttgtattgtcttcaaaaaccttctaa 17695377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 306
Target Start/End: Complemental strand, 26070761 - 26070678
Alignment:
Q  223 ccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagacctt 306  Q
    ||||||||||||| || |||||||||| |||||||||||| ||||| | ||||||||  |  ||| |||||||||||| |||||    
T  26070761 ccctttttcgagccttcttccgtcttgaaatgccttggaacttgaactgaattttctctaacttgcattgtcttcaaaaacctt 26070678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 16622545 - 16622594
Alignment:
Q  264 ttgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||||||||||    
T  16622545 ttgaaatgaattttcttcaatttgtattgtcttcaaa-accttctaagaac 16622594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 11274193 - 11274248
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| ||||||| || |||| |||  ||||||||||||||||||||||||||||||    
T  11274193 ggaacttgaaatgaaatttcatcatcttgtattgtcttcaaagaccttctaagaac 11274248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 314
Target Start/End: Original strand, 12339899 - 12339933
Alignment:
Q  280 tcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||||||||||||||||||| ||||||||||||||    
T  12339899 tcactttgtattgtcttcaacgaccttctaagaac 12339933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 18452680 - 18452730
Alignment:
Q  264 ttgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||| |||||||||||||||||||||| || ||| ||||| |||||||    
T  18452680 ttgaaatgaattttcttcactttgtattgttttaaaaaaccttataagaac 18452730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 25680832 - 25680782
Alignment:
Q  265 tgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaact 315  Q
    |||||| ||||||||| |||||||||||| ||| || ||||||||||||||    
T  25680832 tgaaatgaattttctttactttgtattgttttctaaaaccttctaagaact 25680782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 30072362 - 30072312
Alignment:
Q  264 ttgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||| || |||||||||||||||||||||| ||| ||||| |||||||    
T  30072362 ttgaaatgaaatttcttcactttgtattgtctttaaaaaccttttaagaac 30072312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 24841998 - 24841949
Alignment:
Q  265 tgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||||| ||||||||||| ||||| |||||||||||  ||||||||||||    
T  24841998 tgaaatgaattttcttcattttgtgttgtcttcaaaatccttctaagaac 24841949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 2064 - 2020
Alignment:
Q  254 gccttggaaattgaaataaattttcttcactttgtattgtcttca 298  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||    
T  2064 gccttggaacttgaaataaattttcttcactttgtattttcttca 2020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 12500 - 12456
Alignment:
Q  254 gccttggaaattgaaataaattttcttcactttgtattgtcttca 298  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||    
T  12500 gccttggaacttgaaataaattttcttcactttgtattttcttca 12456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 2053 - 1983
Alignment:
Q  244 gtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||||| |  |||||| ||||||| ||||||||| ||||||||||||||||||| ||| | |||||||    
T  2053 gtcttgcaaagtattggaacttgaaatgaattttctttactttgtattgtcttcaaaaaccatataagaac 1983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 5646 - 5688
Alignment:
Q  272 aattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||||||||||||||||||| |||| |||||||||||||||||    
T  5646 aattttcttcactttgtattttctttaaagaccttctaagaac 5688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 314
Target Start/End: Complemental strand, 7915 - 7815
Alignment:
Q  214 tgttttcttccctttttcgagcatttttccgtcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaa 313  Q
    ||||||| |||  ||||||| |||| ||||||||   ||  ||| |||| ||||||| ||||||||| |||||||| |||||||||  ||||||||||||    
T  7915 tgttttcgtccagttttcgatcattcttccgtctgaaaactcctaggaacttgaaatgaattttcttgactttgtactgtcttcaacaaccttctaagaa 7816  T
Q  314 c 314  Q
    |    
T  7815 c 7815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 22477 - 22532
Alignment:
Q  259 ggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    |||| ||||||| |||||||||||| |||||||||||| ||| |||||||| ||||    
T  22477 ggaacttgaaatgaattttcttcaccttgtattgtcttaaaaaaccttctatgaac 22532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 26831 - 26873
Alignment:
Q  272 aattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||||||||||||||||||||||||  || ||||||||||    
T  26831 aattttcttcactttgtattgtcttcaagaactttctaagaac 26873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 21644 - 21594
Alignment:
Q  264 ttgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac 314  Q
    ||||||| ||| ||||| ||||||||||||||| ||| |||||||||||||    
T  21644 ttgaaatgaatattcttaactttgtattgtctttaaaaaccttctaagaac 21594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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