View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8893_low_47 (Length: 320)

Name: NF8893_low_47
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8893_low_47
NF8893_low_47
[»] chr5 (1 HSPs)
chr5 (35-308)||(21843617-21843890)
[»] scaffold0125 (1 HSPs)
scaffold0125 (35-309)||(19961-20235)
[»] chr4 (4 HSPs)
chr4 (38-148)||(10660080-10660190)
chr4 (38-148)||(10874225-10874335)
chr4 (209-296)||(10660573-10660660)
chr4 (209-296)||(10874718-10874805)
[»] chr2 (1 HSPs)
chr2 (38-148)||(12818505-12818615)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 35 - 308
Target Start/End: Original strand, 21843617 - 21843890
Alignment:
Q  35 agaaattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtcttcattga 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21843617 agaaattcccttttgattcttgtttttgggtattctttgaagatatctatttagatctagattatgtttttgttgttttgattatttgggtcttcattga 21843716  T
Q  135 gtttatgtagtgacnnnnnnngttgatttctgata-ggnnnnnnngtttctaataatgggtatttgnnnnnnnnnttaacctttttatgttgctaaatcc 233  Q
    ||||||||||||||       |||||||||||||| ||       |||||||||||||||||||||         |||||||||||||||||||||||||    
T  21843717 gtttatgtagtgactttttttgttgatttctgatagggtttttttgtttctaataatgggtatttg-aaaaaaaattaacctttttatgttgctaaatcc 21843815  T
Q  234 ttggttgatttttattgttgtgctgttctgctatctgcatttagccggttctttttgtctggctctatgatgtcc 308  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21843816 ttggttgatttttattgttatgctgttctgctatctgcatttagccggttctttttgtctggctctatgatgtcc 21843890  T

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Target: scaffold0125 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 35 - 309
Target Start/End: Complemental strand, 20235 - 19961
Alignment:
Q  35 agaaattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtcttcattga 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20235 agaaattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtcttcattga 20136  T
Q  135 gtttatgtagtgacnnnnnnngttgatttctgata-ggnnnnnnngtttctaataatgggtatttgnnnnnnnnnttaacctttttatgttgctaaatcc 233  Q
    ||||||||||||||       |||||||| ||||| ||       |||||||||||||||||||||         |||||||| ||||||||||||||||    
T  20135 gtttatgtagtgactttttttgttgatttttgatagggtttttttgtttctaataatgggtatttg-aaaaaaaattaaccttgttatgttgctaaatcc 20037  T
Q  234 ttggttgatttttattgttgtgctgttctgctatctgcatttagccggttctttttgtctggctctatgatgtcca 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20036 ttggttgatttttattgttgtgctgttctgctatctgcatttagctggttctttttgtctggctctatgatgtcca 19961  T

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Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 38 - 148
Target Start/End: Original strand, 10660080 - 10660190
Alignment:
Q  38 aattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtcttcattgagtt 137  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10660080 aattcccttttgatttttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtctacattgagtt 10660179  T
Q  138 tatgtagtgac 148  Q
    |||||| ||||    
T  10660180 tatgtactgac 10660190  T

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Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 38 - 148
Target Start/End: Original strand, 10874225 - 10874335
Alignment:
Q  38 aattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtcttcattgagtt 137  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10874225 aattcccttttgatttttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtctacattgagtt 10874324  T
Q  138 tatgtagtgac 148  Q
    |||||| ||||    
T  10874325 tatgtactgac 10874335  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 209 - 296
Target Start/End: Original strand, 10660573 - 10660660
Alignment:
Q  209 ttaacctttttatgttgctaaatccttggttgatttttattgttgtgctgttctgctatctgcatttagccggttctttttgtctggc 296  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  10660573 ttaacctttttatgttgttaaatccttggttggtttttattgttgtgctattatgctatctgcatttagccggttctttttgtctggc 10660660  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 209 - 296
Target Start/End: Original strand, 10874718 - 10874805
Alignment:
Q  209 ttaacctttttatgttgctaaatccttggttgatttttattgttgtgctgttctgctatctgcatttagccggttctttttgtctggc 296  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  10874718 ttaacctttttatgttgttaaatccttggttggtttttattgttgtgctattatgctatctgcatttagccggttctttttgtctggc 10874805  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 12818615 - 12818505
Alignment:
Q  38 aattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgtt--gttttgattatttgggtcttcattgag 135  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||  |||    ||||||| |||||| ||  ||||||||| |||||||||||||||||    
T  12818615 aattcccttttgattcttttttttgggtattctttgaagataact--ttaaacatagattacgttttttttttgttttgattgtttgggtcttcattgag 12818518  T
Q  136 tttatgtagtgac 148  Q
    |||||||||||||    
T  12818517 tttatgtagtgac 12818505  T

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