View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8893_low_50 (Length: 302)

Name: NF8893_low_50
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8893_low_50
NF8893_low_50
[»] chr1 (8 HSPs)
chr1 (29-290)||(35162929-35163190)
chr1 (29-285)||(30403109-30403365)
chr1 (29-285)||(30409666-30409922)
chr1 (29-285)||(29394264-29394520)
chr1 (29-162)||(29393903-29394036)
chr1 (30-162)||(35163418-35163550)
chr1 (41-162)||(30402760-30402881)
chr1 (41-162)||(30409317-30409438)
[»] chr8 (6 HSPs)
chr8 (29-285)||(11143689-11143945)
chr8 (29-285)||(1604071-1604327)
chr8 (29-162)||(1661459-1661592)
chr8 (41-162)||(11144173-11144294)
chr8 (216-285)||(1661604-1661673)
chr8 (29-129)||(44551873-44551972)
[»] chr3 (2 HSPs)
chr3 (29-285)||(55040338-55040594)
chr3 (29-162)||(55039977-55040110)
[»] chr5 (2 HSPs)
chr5 (29-285)||(9260837-9261093)
chr5 (29-162)||(9260474-9260607)
[»] chr7 (3 HSPs)
chr7 (103-285)||(13947644-13947826)
chr7 (29-162)||(13948053-13948186)
chr7 (55-143)||(1972595-1972683)
[»] chr4 (2 HSPs)
chr4 (146-286)||(46623660-46623800)
chr4 (55-143)||(36892665-36892753)
[»] chr6 (3 HSPs)
chr6 (176-285)||(2311861-2311970)
chr6 (29-122)||(32445856-32445949)
chr6 (29-129)||(14986903-14987002)
[»] chr2 (1 HSPs)
chr2 (55-143)||(26450122-26450210)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 29 - 290
Target Start/End: Complemental strand, 35163190 - 35162929
Alignment:
Q  29 gcagccaacaaagaggcactacacagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 128  Q
    |||||||||||||| ||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35163190 gcagccaacaaagatgcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 35163091  T
Q  129 tctcaaaagacaatctttatcaatttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 228  Q
    |||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35163090 tctcaaaagacaatctttatcactttatgtaaagtttttttatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 35162991  T
Q  229 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatgatgtc 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35162990 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatgatgtc 35162929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 29 - 285
Target Start/End: Original strand, 30403109 - 30403365
Alignment:
Q  29 gcagccaacaaagaggcactacacagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 128  Q
    |||||||||||||| ||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30403109 gcagccaacaaagatgcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 30403208  T
Q  129 tctcaaaagacaatctttatcaatttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 228  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30403209 tctcaaaagacaatctttatcaatttatgtaaagtttatttatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 30403308  T
Q  229 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30403309 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 30403365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 29 - 285
Target Start/End: Original strand, 30409666 - 30409922
Alignment:
Q  29 gcagccaacaaagaggcactacacagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 128  Q
    |||||||||||||| ||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30409666 gcagccaacaaagatgcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 30409765  T
Q  129 tctcaaaagacaatctttatcaatttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 228  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30409766 tctcaaaagacaatctttatcaatttatgtaaagtttatttatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 30409865  T
Q  229 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30409866 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 30409922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 29 - 285
Target Start/End: Original strand, 29394264 - 29394520
Alignment:
Q  29 gcagccaacaaagaggcactacacagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 128  Q
    ||||| |||||||| ||||||||||| ||||||||| || |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29394264 gcagctaacaaagatgcactacacagtctgctgcccctcaagaacacaccacgaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 29394363  T
Q  129 tctcaaaagacaatctttatcaatttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 228  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29394364 tctcaaaagacaatctttatcaatttatgtaaagtttatttatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 29394463  T
Q  229 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29394464 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 29394520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 29393903 - 29394036
Alignment:
Q  29 gcagccaacaaagaggcactacacagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 128  Q
    |||||||||| |||||||||||||| |||||||  | |||||| || | ||||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  29393903 gcagccaacacagaggcactacacatcctgctgttcctcgagagcacatcacaaaaaacataaaccacctcgacaaagtccaccaaaactatcactattt 29394002  T
Q  129 tctcaaaagacaatctttatcaatttatgtaaag 162  Q
    ||||||| ||||||||||||||||||||||||||    
T  29394003 tctcaaaggacaatctttatcaatttatgtaaag 29394036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 35163550 - 35163418
Alignment:
Q  30 cagccaacaaagaggcactacacagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactatttt 129  Q
    ||||||||| |||||||| |||||||||| || || |||||| || ||||||||||||| ||||||| ||||||||||  ||||||||||||||||||||    
T  35163550 cagccaacacagaggcaccacacagcctgttgtccctcgagagcacaccacaaaaaacataaaccacttcgacaaagtccaccaaaactatcactatttt 35163451  T
Q  130 ctcaaaagacaatctttatcaatttatgtaaag 162  Q
    |||||| ||||||||||||||||||||||||||    
T  35163450 ctcaaaggacaatctttatcaatttatgtaaag 35163418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 30402760 - 30402881
Alignment:
Q  41 gaggcactacacagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagaca 140  Q
    ||||||| ||||||||||||| ||||||||| || ||||||||||||| |||||||||||||| |||  |||||||||||||||||||||||||| ||||    
T  30402760 gaggcaccacacagcctgctgtccttcgagagcacaccacaaaaaacataaaccacctcgacagagtccaccaaaactatcactattttctcaaaggaca 30402859  T
Q  141 atctttatcaatttatgtaaag 162  Q
     ||||| |||||||||||||||    
T  30402860 gtctttttcaatttatgtaaag 30402881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 30409317 - 30409438
Alignment:
Q  41 gaggcactacacagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagaca 140  Q
    ||||||| ||||||||||||| ||||||||| || ||||||||||||| |||||||||||||| |||  |||||||||||||||||||||||||| ||||    
T  30409317 gaggcaccacacagcctgctgtccttcgagagcacaccacaaaaaacataaaccacctcgacagagtccaccaaaactatcactattttctcaaaggaca 30409416  T
Q  141 atctttatcaatttatgtaaag 162  Q
     ||||| |||||||||||||||    
T  30409417 gtctttttcaatttatgtaaag 30409438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 29 - 285
Target Start/End: Complemental strand, 11143945 - 11143689
Alignment:
Q  29 gcagccaacaaagaggcactacacagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 128  Q
    |||||||||||||| ||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11143945 gcagccaacaaagatgcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 11143846  T
Q  129 tctcaaaagacaatctttatcaatttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 228  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11143845 tctcaaaagacaatctttatcaatttatgtaaagtttatttatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 11143746  T
Q  229 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11143745 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 11143689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 29 - 285
Target Start/End: Original strand, 1604071 - 1604327
Alignment:
Q  29 gcagccaacaaagaggcactacacagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 128  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  1604071 gcagccaacaaagaggcactacacatcctgctgcccctcgagaacacaccacaaaaaacagaaaccacatcgacaaagtccaccaaaactatcactattt 1604170  T
Q  129 tctcaaaagacaatctttatcaatttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 228  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1604171 tctcaaaagacaatctttatcaatttatgtaaagtttatttatttgcacactattttatcataacattgacaatacttgttgtgaaaatttacatctaat 1604270  T
Q  229 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1604271 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 1604327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 1661459 - 1661592
Alignment:
Q  29 gcagccaacaaagaggcactacacagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 128  Q
    |||||||||| |||||||| ||||||||||||| || |||||| || |||| |||||||| ||||||||||||| ||||  |||||||||||||||||||    
T  1661459 gcagccaacacagaggcaccacacagcctgctgtccctcgagagcacaccataaaaaacataaaccacctcgacgaagtccaccaaaactatcactattt 1661558  T
Q  129 tctcaaaagacaatctttatcaatttatgtaaag 162  Q
    ||||||| ||||||||||||||||||||||||||    
T  1661559 tctcaaaggacaatctttatcaatttatgtaaag 1661592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 41 - 162
Target Start/End: Complemental strand, 11144294 - 11144173
Alignment:
Q  41 gaggcactacacagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagaca 140  Q
    ||||||| ||||||||||||| ||||||||| || ||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||| ||||    
T  11144294 gaggcaccacacagcctgctgtccttcgagagcacaccacaaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggaca 11144195  T
Q  141 atctttatcaatttatgtaaag 162  Q
     |||||||||||||||||||||    
T  11144194 gtctttatcaatttatgtaaag 11144173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 1661604 - 1661673
Alignment:
Q  216 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 285  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1661604 atttacatctaatgaaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 1661673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 44551972 - 44551873
Alignment:
Q  29 gcagccaacaaagaggcactacacagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 128  Q
    |||||||||| ||||||||||||||||||||||||| ||||||  | ||||||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  44551972 gcagccaacacagaggcactacacagcctgctgcccctcgagagaacaccacaaaaaacagaaa-cacctcgacaaagtccaccaaaactatcactattt 44551874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 29 - 285
Target Start/End: Original strand, 55040338 - 55040594
Alignment:
Q  29 gcagccaacaaagaggcactacacagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 128  Q
    |||||||||||||| ||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  55040338 gcagccaacaaagatgcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaaatatcactattt 55040437  T
Q  129 tctcaaaagacaatctttatcaatttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 228  Q
    ||||||||||||||||| ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  55040438 tctcaaaagacaatcttcatcaatttatgtaaagtttatttatttgcacactattttatcataacattgacaatacttgttatgcaaatttacatctaat 55040537  T
Q  229 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 285  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55040538 gaaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 55040594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 55039977 - 55040110
Alignment:
Q  29 gcagccaacaaagaggcactacacagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 128  Q
    |||||||||| |||||||| ||||||||||||| || |||||| || ||||||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  55039977 gcagccaacacagaggcaccacacagcctgctgtccctcgagagcacaccacaaaaaacataaaccacctcgacaaagtccaccaaaactatcactattt 55040076  T
Q  129 tctcaaaagacaatctttatcaatttatgtaaag 162  Q
    ||||||| || |||||||||||||||||||||||    
T  55040077 tctcaaaggataatctttatcaatttatgtaaag 55040110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 29 - 285
Target Start/End: Original strand, 9260837 - 9261093
Alignment:
Q  29 gcagccaacaaagaggcactacacagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 128  Q
    |||||||||| ||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||| |  |||||||||||||||||||    
T  9260837 gcagccaacacagaggcactacacagcctgctgcccctcgagagcacaccacaaaaaacagaaaccacctcgacaaaatccaccaaaactatcactattt 9260936  T
Q  129 tctcaaaagacaatctttatcaatttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 228  Q
    |||||| ||||||||| |||||||||||||||||       |||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||    
T  9260937 tctcaacagacaatctctatcaatttatgtaaagtttatttatttgcacactattttatcataacatagacaatacctattgtgcaaatttagatctaat 9261036  T
Q  229 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 285  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  9261037 ggaactatatttcatattagttattcactcccattatcgtgatgattgtggctcatg 9261093  T

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Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 9260474 - 9260607
Alignment:
Q  29 gcagccaacaaagaggcactacacagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 128  Q
    ||||||||||  ||||||||||||||||||||| || |||||| || || |||||||||| ||||||||||||||||||  |||||||||||| ||||||    
T  9260474 gcagccaacaccgaggcactacacagcctgctgtccctcgagagcacactacaaaaaacaaaaaccacctcgacaaagtccaccaaaactatcgctattt 9260573  T
Q  129 tctcaaaagacaatctttatcaatttatgtaaag 162  Q
    |||||||||||||||||||||||||||| |||||    
T  9260574 tctcaaaagacaatctttatcaatttatataaag 9260607  T

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Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 103 - 285
Target Start/End: Complemental strand, 13947826 - 13947644
Alignment:
Q  103 aaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaat 202  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  13947826 aaagtataccaaaactatcattattttctcaaaagacaatctttatcaatttatgtaaagtttatttatttgcacactattttatcataacattgacaat 13947727  T
Q  203 acttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13947726 acttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 13947644  T

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Target: chr7; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 13948186 - 13948053
Alignment:
Q  29 gcagccaacaaagaggcactacacagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 128  Q
    |||||||||| |||||||| ||||||||||||| || ||||||||| ||||||||||||| ||||||||||||||||||   ||||||||||||||||||    
T  13948186 gcagccaacacagaggcaccacacagcctgctgtccctcgagaacacaccacaaaaaacataaaccacctcgacaaagtcccccaaaactatcactattt 13948087  T
Q  129 tctcaaaagacaatctttatcaatttatgtaaag 162  Q
    ||||||| ||||||||||||||||||||||||||    
T  13948086 tctcaaaggacaatctttatcaatttatgtaaag 13948053  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 1972683 - 1972595
Alignment:
Q  55 cctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatc 143  Q
    |||||||||| |||||  || ||| ||||  ||||||||||| |||| |||||  |||||||||| |||||||||||||| ||||||||    
T  1972683 cctgctgcccctcgagggcacaccgcaaaggacagaaaccacttcgaaaaagtccaccaaaactaccactattttctcaacagacaatc 1972595  T

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Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 146 - 286
Target Start/End: Original strand, 46623660 - 46623800
Alignment:
Q  146 tatcaatttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatat 245  Q
    |||||||||||||||||       |||| ||||||||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||||||||     
T  46623660 tatcaatttatgtaaagtttatttatttacacactattttatcataacaaagacaatacttgttgtgcaaatttaggtctaatggaactatatttcataa 46623759  T
Q  246 tagttattcacacccattatcgtgatgatagtggctcatga 286  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  46623760 tagttaatcacacccattatggtgatgatagtggctcatga 46623800  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 36892753 - 36892665
Alignment:
Q  55 cctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatc 143  Q
    |||||||||| |||||  || ||| ||||| ||||||||||| ||||||||||  ||||||||||||||||||||||||| ||||||||    
T  36892753 cctgctgcccctcgagggcacaccgcaaaagacagaaaccacttcgacaaagtccaccaaaactatcactattttctcaacagacaatc 36892665  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 176 - 285
Target Start/End: Original strand, 2311861 - 2311970
Alignment:
Q  176 acactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgata 275  Q
    |||||||||||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||     
T  2311861 acactattttatcataacatagacaatacctattgtgcaaatttagatctaatggaactatatttgatattaggtattcactcccattatcgtgatgatt 2311960  T
Q  276 gtggctcatg 285  Q
    ||||||||||    
T  2311961 gtggctcatg 2311970  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 32445949 - 32445856
Alignment:
Q  29 gcagccaacaaagaggcactacacagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatca 122  Q
    ||||| |||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||  |||||||||||||    
T  32445949 gcagctaacaaagaggcactacacagcctgctgcccctcgagagcacaccacaaaaaacagaaaccacctcgacaaagtccaccaaaactatca 32445856  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 14986903 - 14987002
Alignment:
Q  29 gcagccaacaaagaggcactacacagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 128  Q
    |||||||||| |||||||||||||||||| |||||| ||||||  | |  |||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  14986903 gcagccaacacagaggcactacacagcctactgcccctcgagataacatgacaaaaaacagaaa-cacctcgacaaagtccaccaaaactatcactattt 14987001  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 26450210 - 26450122
Alignment:
Q  55 cctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatc 143  Q
    |||||||||| |||||  || ||| ||||| ||||||||||| ||||||||||  |||||||||| |||||||||||||| ||||||||    
T  26450210 cctgctgcccctcgagggcacaccgcaaaagacagaaaccacttcgacaaagtccaccaaaactaccactattttctcaacagacaatc 26450122  T

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