View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8893_low_54 (Length: 297)
Name: NF8893_low_54
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8893_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 34765638 - 34765901
Alignment:
| Q |
1 |
cggtggcaacttctcaacgattaattttcaagaagcagaagcttactcatcttgtggcaaactaaagaagatctcttctggaatagaacttgttaaccta |
100 |
Q |
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| T |
34765638 |
cggtggcaacttcgcatcgattaattttcaagaagcagaagcttactcatcttgtggcaaactaaagaagatctcttctggaatagaacttgttaaccta |
34765737 |
T |
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| Q |
101 |
tttcttgaacagttttcagattaggaaggtatagttcaagaaaccaaattcccccacaagaaaataccatacagaaccttcaattttcgaacctgataag |
200 |
Q |
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| T |
34765738 |
tttcttgaacagttttcagattagaaaggtatagttccagaaaccaaatt--cccacaagaaaataccatgcagaaccttcaattttcaaacctgataag |
34765835 |
T |
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| Q |
201 |
gaattgtacttgatatatgctatataagctagctaactcgtttgacattcaaaagttagtgcatca |
266 |
Q |
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| T |
34765836 |
gaattgtacttgatatatgctatataagctagctaactcgtttgacattcaaaagttagtgcatca |
34765901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 44015932 - 44016019
Alignment:
| Q |
128 |
ggtatagttcaagaaaccaaattcccccacaagaaaataccatacagaaccttcaattttcgaacctgataaggaattgtacttgata |
215 |
Q |
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|||||||| | |||||||||||||||||||||||||| || | ||||||||||| |||| || ||||||||||||||||| ||||| |
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| T |
44015932 |
ggtatagtaccagaaaccaaattcccccacaagaaaaaactctgtagaaccttcaactttccaagctgataaggaattgtacctgata |
44016019 |
T |
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