View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8893_low_58 (Length: 290)

Name: NF8893_low_58
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8893_low_58
NF8893_low_58
[»] chr6 (9 HSPs)
chr6 (1-277)||(18710535-18710811)
chr6 (1-277)||(18704600-18704876)
chr6 (1-277)||(31359069-31359345)
chr6 (1-277)||(18161573-18161849)
chr6 (1-277)||(34766864-34767140)
chr6 (1-277)||(16899454-16899730)
chr6 (85-277)||(29541955-29542147)
chr6 (1-90)||(29561121-29561210)
chr6 (29-124)||(25895796-25895891)
[»] scaffold0254 (1 HSPs)
scaffold0254 (1-277)||(6125-6401)
[»] chr7 (12 HSPs)
chr7 (1-277)||(5389728-5390004)
chr7 (1-277)||(6535992-6536268)
chr7 (1-277)||(26305064-26305340)
chr7 (1-277)||(26361478-26361754)
chr7 (1-277)||(32099888-32100164)
chr7 (1-277)||(8502557-8502833)
chr7 (1-277)||(16140741-16141017)
chr7 (1-277)||(44898807-44899083)
chr7 (1-277)||(46498622-46498898)
chr7 (1-277)||(9543797-9544073)
chr7 (4-277)||(42596866-42597139)
chr7 (1-277)||(13283987-13284262)
[»] chr5 (11 HSPs)
chr5 (1-277)||(26200882-26201158)
chr5 (1-277)||(33940828-33941104)
chr5 (1-277)||(18362785-18363061)
chr5 (1-277)||(20949363-20949639)
chr5 (1-277)||(27413656-27413932)
chr5 (1-273)||(23375462-23375726)
chr5 (78-276)||(5601687-5601885)
chr5 (29-219)||(22456428-22456618)
chr5 (29-207)||(24299175-24299353)
chr5 (29-252)||(30453181-30453404)
chr5 (29-252)||(30458259-30458482)
[»] chr4 (7 HSPs)
chr4 (1-277)||(520470-520746)
chr4 (1-277)||(6693726-6694002)
chr4 (1-277)||(16254741-16255017)
chr4 (2-275)||(7845016-7845289)
chr4 (1-277)||(17150881-17151157)
chr4 (29-252)||(54698356-54698579)
chr4 (29-252)||(26813465-26813688)
[»] chr3 (5 HSPs)
chr3 (1-277)||(9538643-9538919)
chr3 (1-277)||(8974354-8974630)
chr3 (1-277)||(6423815-6424091)
chr3 (3-277)||(12387495-12387769)
chr3 (78-276)||(48979781-48979979)
[»] chr2 (6 HSPs)
chr2 (1-277)||(18652726-18653002)
chr2 (1-277)||(9512321-9512597)
chr2 (1-277)||(27168543-27168819)
chr2 (1-277)||(45015861-45016137)
chr2 (1-277)||(22903647-22903923)
chr2 (78-276)||(1792063-1792261)
[»] scaffold0313 (2 HSPs)
scaffold0313 (1-277)||(7277-7553)
scaffold0313 (1-277)||(11059-11335)
[»] chr8 (5 HSPs)
chr8 (1-277)||(21211527-21211803)
chr8 (1-277)||(14892309-14892585)
chr8 (1-277)||(22832247-22832523)
chr8 (29-207)||(18233936-18234114)
chr8 (29-207)||(18243387-18243565)
[»] chr1 (4 HSPs)
chr1 (1-277)||(1987746-1988022)
chr1 (1-277)||(16156391-16156667)
chr1 (29-277)||(22959836-22960083)
chr1 (208-256)||(25426991-25427039)
[»] scaffold0058 (1 HSPs)
scaffold0058 (2-277)||(53090-53363)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-277)||(148216-148492)
[»] scaffold0141 (2 HSPs)
scaffold0141 (54-277)||(20283-20506)
scaffold0141 (1-60)||(27670-27729)
[»] scaffold0529 (1 HSPs)
scaffold0529 (20-277)||(33-290)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-273)||(16739-17003)
[»] scaffold0015 (1 HSPs)
scaffold0015 (29-277)||(189112-189359)
[»] scaffold0611 (1 HSPs)
scaffold0611 (1-90)||(13-102)
[»] scaffold0049 (1 HSPs)
scaffold0049 (1-60)||(87083-87142)
[»] scaffold0028 (1 HSPs)
scaffold0028 (29-252)||(102870-103093)
[»] scaffold0010 (1 HSPs)
scaffold0010 (29-207)||(258075-258253)


Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 18710535 - 18710811
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18710535 accaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcttagaatcttt 18710634  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18710635 ctgattctctcatgagtggaatattcctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 18710734  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  18710735 tcatttcaaagacttcaaactttctgactccaatgtcaattctagtttctttgacatgagatgtaccttcatgatgt 18710811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 18704600 - 18704876
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18704600 accaatgagatcttccaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccacatacttggaagacatcttagaatcttt 18704699  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18704700 ctgattctctcatgagtggaatattcctttccaagagatctcatttcatttactattgtagtaaatctagcataaatctcatcaatggtttcattttcac 18704799  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  18704800 tcatttcaaagacttcaaaatttctgactccaatgtcaattctagtttctttgacatgagatgtaccttcatgatgt 18704876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 31359345 - 31359069
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||    
T  31359345 accaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcagaattttt 31359246  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31359245 ctaattctatcatgagtggaatatgcctttccaagagatctcatttcatttactattgtagtaaatcttgcatacatctcatcaatggtttcattttcac 31359146  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  31359145 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 31359069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 18161849 - 18161573
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||| |||    
T  18161849 accaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacacacttggaagacatctcagaattttt 18161750  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18161749 ctaattctatcatgagtggaatatgcctttccaagagatctcatttcatttactattgtagtaaatcttgcatacatctcatcaatggtttcattttcac 18161650  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  18161649 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 18161573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 34767140 - 34766864
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |  || |||    
T  34767140 accaatgagatcttccaggttcatagatttcaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcaatattttt 34767041  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34767040 ctgattctctcatgagtggaatatgcttttccaagagatctcatttcatttactattgtagtaaatctggcatacatctcatcaatggtttcattttcac 34766941  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  34766940 tcatttcaaagacttcaaactttctgactccaatgtcaattctggtttctttgacatgagatgtaccttcatgatgt 34766864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 16899730 - 16899454
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||| |||    
T  16899730 accaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacacacttggaagacatctcagaattttt 16899631  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16899630 ctaattctatcatgagttgaatatgcctttccaagagatctcatttcatttactattgtagtaaatcttgcatacatctcatcaatggtttcattttcac 16899531  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  16899530 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 16899454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 85 - 277
Target Start/End: Complemental strand, 29542147 - 29541955
Alignment:
Q  85 acatcttagaatctttctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatca 184  Q
    ||||||||  || ||||||||||| |||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29542147 acatcttaatatttttctgattctatcatgagtggaatatgcctttccaagagatttcatttcatttactattgtagtaaatctagcatacatctcatca 29542048  T
Q  185 atggtttcattttcactcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    |||||||||||||||||||||| |||||||||||| ||||| ||| |||||||||||||||||||||||||| |||||  ||| |||||||||    
T  29542047 atggtttcattttcactcattttaaagacttcaaattttctaactccaatgtcaattctagtttctttgacatgagattgaccctcatgatgt 29541955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 29561210 - 29561121
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatct 90  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||| |||   ||| ||||| |||||||||    
T  29561210 accaatgagatctttcaggttcatagattttaaatctttggcctaagtaattgttgtgaccatatgtcctcacacacttgaaagacatct 29561121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 25895891 - 25895796
Alignment:
Q  29 tttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatctttctgattctctcatgagtggaatat 124  Q
    ||||| |||||||| ||||| ||||| || |||||||||||| |  || |||| ||||||||||  || ||||||||||| ||||||| |||||||    
T  25895891 tttaagtctttggcttgagtgattgctgtaaccataggtctccatgtatttgggagacatcttaatatttttctgattctgtcatgaggggaatat 25895796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 6125 - 6401
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |  || |||    
T  6125 accaatgagatcttccaggttcatagatttcaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcaatattttt 6224  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6225 ctgattctctcatgagtggaatatgcctttccaagagatctcatttcatttactattgtagtaaatctggcatacatctcatcaatggtttcattttcac 6324  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  6325 tcatttcaaagacttcaaactttctgactccaatgtcaattctggtttctttgacatgagatgtaccttcatgatgt 6401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 5389728 - 5390004
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||    
T  5389728 accaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcagaattttt 5389827  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5389828 ctaattctatcatgagtggaatatgcctttccaagagatctcatttcatttactattgtagtaaatcttgcatacatctcatcaatggtttcattttcac 5389927  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  5389928 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 5390004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 6536268 - 6535992
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||    
T  6536268 accaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcagaattttt 6536169  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6536168 ctaattctatcatgagtggaatatgcctttccaagagatctcatttcatttactattgtagtaaatcttgcatacatctcatcaatggtttcattttcac 6536069  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  6536068 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 6535992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 26305340 - 26305064
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||    
T  26305340 accaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcagaattttt 26305241  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26305240 ctaattctatcatgagtggaatatgcctttccaagagatctcatttcatttactattgtagtaaatcttgcatacatctcatcaatggtttcattttcac 26305141  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  26305140 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 26305064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 26361478 - 26361754
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||    
T  26361478 accaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcagaattttt 26361577  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26361578 ctaattctatcatgagtggaatatgcctttccaagagatctcatttcatttactattgtagtaaatcttgcatacatctcatcaatggtttcattttcac 26361677  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  26361678 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 26361754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 32100164 - 32099888
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||    
T  32100164 accaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcagaattttt 32100065  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32100064 ctaattctatcatgagtggaatatgcctttccaagagatctcatttcatttactattgtagtaaatcttgcatacatctcatcaatggtttcattttcac 32099965  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  32099964 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 32099888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 8502833 - 8502557
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||    
T  8502833 accaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcagaattttt 8502734  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  8502733 ctaattctatcatgagtggaatatgcctttccaagagatctcatttcatttactattgtagtaaatcttgcatacatttcatcaatggtttcattttcac 8502634  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  8502633 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 8502557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 16140741 - 16141017
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||| |||    
T  16140741 accaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacacacttggaagacatctcagaattttt 16140840  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16140841 ctaattctatcatgagtggaatatgcctttccaagagatctcatttcatttactattgtagtaaatcttgcatacatctcatcaatggtttcattttcac 16140940  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  16140941 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 16141017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 44899083 - 44898807
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||    
T  44899083 accaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcagaattttt 44898984  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  44898983 ctaattctatcatgagtggaatatgcctttccaagagatctcatttcatttactattgtagtaaatcttgcatacatctcatcaatggtttcatttttac 44898884  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  44898883 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 44898807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 46498898 - 46498622
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||| |||    
T  46498898 accaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacacacttggaagacatctcagaattttt 46498799  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46498798 ctaattctatcatgagtggaatatgcctttccaagagatctcatttcatttactattgtagtaaatcttgcatacatctcatcaatggtttcattttcac 46498699  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| || ||||||| |||||||||    
T  46498698 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgaaatgtaccctcatgatgt 46498622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 9543797 - 9544073
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||| ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||| || |||    
T  9543797 accaataagatcttccaggttcatagattttaaatctttggcctgggtgattgcagtgaccataggtctccacatacttggaagacatcttagtattttt 9543896  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9543897 ctaattctatcatgagtagaatatgcctttccaagagatctcatttcatttactattgtagtaaatctggcatacatctcatcaatggtttcattttcac 9543996  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    |||||||||| |||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  9543997 tcatttcaaaaacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 9544073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 277
Target Start/End: Complemental strand, 42597139 - 42596866
Alignment:
Q  4 aatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatctttctg 103  Q
    ||||||||||| ||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |  || ||||||    
T  42597139 aatgagatcttccaggttcatagatttcaaatctttggcctcagtgattgcagtgaccataggtctctacatacttggaaggcatctcaatatttttctg 42597040  T
Q  104 attctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcactca 203  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||    
T  42597039 attctctcatgagtggaatatgcctttccaagagatctcatttcatttactattgtagtaaatctggcatacatctcatcaatggtttcattcacactca 42596940  T
Q  204 tttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||||||||||  |||||||||| |||||||||||||| ||||||||||||||||||||    
T  42596939 tttcaaagacttcaaactttctgactctaatgtcaattatagtttctttgacatgagatgtaccttcatgatgt 42596866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 13283987 - 13284262
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||| |||| |||||||||||||||| ||||||||||||| |||||||  || |||    
T  13283987 accaatgagatcttccaggttcatagatttcaaatctttggcctgagtgattgaagtgaccataggtctccacatacttggaaggcatcttaatattttt 13284086  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    |||||||||||||||||||| |||  ||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  13284087 ctgattctctcatgagtggagtatgccttcccaagagatctcatttcatttactattgcagtaaatctggcatacatctcatcaatggtttcattttcac 13284186  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    |||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  13284187 tcatttcaaaga-ttcaaactttttgactccaatgtcaattctagtttctttgacatgagatgtaccttcatgatgt 13284262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 26200882 - 26201158
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||    
T  26200882 accaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcagaattttt 26200981  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26200982 ctaattctatcatgagtggaatatgcctttccaagagatctcatttcatttactattgtagtaaatcttgcatacatctcatcaatggtttcattttcac 26201081  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  26201082 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 26201158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 33941104 - 33940828
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||    
T  33941104 accaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcagaattttt 33941005  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33941004 ctaattctatcatgagtggaatatgcctttccaagagatctcatttcatttactattgtagtaaatcttgcatacatctcatcaatggtttcattttcac 33940905  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  33940904 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 33940828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 18363061 - 18362785
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||| |||    
T  18363061 accaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacacacttggaagacatctcagaattttt 18362962  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18362961 ctaattctatcatgagtggaatatgcctttccaagagatctcatttcatttactattgtagtaaatcttgcatacatctcatcaatggtttcattttcac 18362862  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  18362861 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 18362785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 20949639 - 20949363
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |  || |||    
T  20949639 accaatgagatcttccaggttcatagatttcaaatccttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcaatattttt 20949540  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  20949539 ctgattctctcatgagtggaatatgcttttccaagagatctcatttcatttactattgtagtaaatctggcatacatctcatcaatggtttcattttcac 20949440  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  20949439 tcatttcaaagacttcaaactttctgactccaatgtcaattctggtttctttgacatgagatgtaccttcatgatgt 20949363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 27413932 - 27413656
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| || || |||    
T  27413932 accaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacacacttggaagacatctcagtattttt 27413833  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27413832 ctaattctatcatgagtagaatatgcctttccaagagatctcatttcatttactattgtagtaaatctggcatacatctcatcaatggtttcattttcac 27413733  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  27413732 tcatttcaaagacttcaaattttctaactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 27413656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 23375462 - 23375726
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||    ||||||||||| |||||||||     ||||| |  || |||    
T  23375462 accaatgagatcttcaaggttcatagattttaaatctttggcctgagtaattgcat---ccataggtctccacatacttg-----catctcaatattttt 23375553  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    |||||||| |||||||||||||||   |||| |||||| ||||| ||||||||||||||||||||||||  |||||| |||||||| |||||||| ||||    
T  23375554 ctgattctttcatgagtggaatatacttttcgaagagacctcatctcatttactattgtagtaaatctaaaatacatttcatcaatagtttcattctcac 23375653  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatg 273  Q
    ||||||||||||||||| ||||||||||| | |||| |||||| ||||| |||||| |||| |||||||||||    
T  23375654 tcatttcaaagacttcacactttctgactcctatgttaattctggtttccttgacatgagaggtaccttcatg 23375726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 276
Target Start/End: Complemental strand, 5601885 - 5601687
Alignment:
Q  78 ttggaagacatcttagaatctttctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacat 177  Q
    |||||||||||||||| || ||||| ||||| || || || |||||  | |||||||| ||||| | |||||||||||| |  || |||||||  |||||    
T  5601885 ttggaagacatcttagtatttttcttattctgtcgtgggtagaataagtttttccaagtgatcttagttcatttactatagatgtgaatctagagtacat 5601786  T
Q  178 ctcatcaatggtttcattttcactcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatg 276  Q
     ||||||||| |||||| |||| |||||||||||| |||||||||||| ||  ||||||||||||| |||||||| ||| |   ||| |||||||||||    
T  5601785 ttcatcaatgttttcatcttcaatcatttcaaagatttcaaactttctcacaccaatgtcaattcttgtttctttaacatggcttgttccttcatgatg 5601687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 29 - 219
Target Start/End: Original strand, 22456428 - 22456618
Alignment:
Q  29 tttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatctttctgattctctcatgagtggaatatttct 128  Q
    |||||||||||||| ||||| ||| | || |||||||||||| | ||| | |||||||||||||  || ||||||||||| |||||||  |||||| | |    
T  22456428 tttaaatctttggcttgagtgatttctgtaaccataggtctccatatattaggaagacatcttaatatttttctgattctgtcatgaggagaatatattt 22456527  T
Q  129 ttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcactcatttcaaagacttcaaa 219  Q
    |||| |  || ||||  ||||||||| | | |||||||||   |||||| ||||||||| |||| | |||| ||||||| |||| ||||||    
T  22456528 ttcccaatgacctcaactcatttactttagaagtaaatctgaaatacatttcatcaatgttttcctcttcattcatttcgaagatttcaaa 22456618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 207
Target Start/End: Original strand, 24299175 - 24299353
Alignment:
Q  29 tttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatctttctgattctctcatgagtggaatatttct 128  Q
    ||||| |||||||| ||||| ||||| || |||||||||||| |  || |||| ||||||||||  || ||||||||||| ||||||| ||||||| | |    
T  24299175 tttaagtctttggcttgagtgattgctgtaaccataggtctccatgtatttgggagacatcttaatatttttctgattctgtcatgaggggaatatattt 24299274  T
Q  129 ttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcactcatttc 207  Q
    |||| |  ||||| |  ||||| ||||| | ||| ||||  | |||||| ||||||||  |||| | ||||||||||||    
T  24299275 ttcccaatgatcttaactcattcactatagaagtgaatcatgaatacatttcatcaatattttcttcttcactcatttc 24299353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 252
Target Start/End: Original strand, 30453181 - 30453404
Alignment:
Q  29 tttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatctttctgattctctcatgagtggaatatttct 128  Q
    ||||| ||||| || || || |||||||| ||||| |||||| |  | ||||||||||||||||  || ||||| || |  |||||||||| |||  | |    
T  30453181 tttaagtctttagcttgtgtgattgcagttaccatgggtctccatgtgcttggaagacatcttaagatttttcttatccgatcatgagtggtataagttt 30453280  T
Q  129 ttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcactcatttcaaagacttcaaactttctgac 228  Q
    ||||||| ||||| | |||||| || || |  || ||||| |  ||||| ||||||||| | |||| |||  ||||||| |||| |||||| ||||| ||    
T  30453281 ttccaagtgatcttaattcattcacaatagatgtgaatctggagtacatttcatcaatgttctcatcttcgttcatttcgaagatttcaaattttcttac 30453380  T
Q  229 ttcaatgtcaattctagtttcttt 252  Q
      ||||||| ||||| ||||||||    
T  30453381 gccaatgtctattcttgtttcttt 30453404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 252
Target Start/End: Original strand, 30458259 - 30458482
Alignment:
Q  29 tttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatctttctgattctctcatgagtggaatatttct 128  Q
    ||||| ||||| || || || |||||||| ||||| |||||| |  | ||||||||||||||||  || ||||| || |  |||||||||| |||  | |    
T  30458259 tttaagtctttagcttgtgtgattgcagttaccatgggtctccatgtgcttggaagacatcttaagatttttcttatccgatcatgagtggtataagttt 30458358  T
Q  129 ttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcactcatttcaaagacttcaaactttctgac 228  Q
    ||||||| ||||| | |||||| || || |  || ||||| |  ||||| ||||||||| | |||| |||  ||||||| |||| |||||| ||||| ||    
T  30458359 ttccaagtgatcttaattcattcacaatagatgtgaatctggagtacatttcatcaatgttctcatcttcgttcatttcgaagatttcaaattttcttac 30458458  T
Q  229 ttcaatgtcaattctagtttcttt 252  Q
      ||||||| ||||| ||||||||    
T  30458459 gccaatgtctattcttgtttcttt 30458482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 520470 - 520746
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |  || |||    
T  520470 accaatgagatcttccaggttcatagatttcaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcaatattttt 520569  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  520570 ctgattctctcatgagtggaatatgtttttccaagagatctcatttcatttactattgtagtaaatctggcatacatctcatcaatggtttcattttcac 520669  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  520670 tcatttcaaagacttcaaactttctgactccaatgtcaattctggtttctttgacatgagatgtaccttcatgatgt 520746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 6694002 - 6693726
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||    
T  6694002 accaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcagaattttt 6693903  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6693902 ctaattctatcatgagtggaatatgcctttccaagagatctcatttcatttactattgtagtaaatcttgcatacatctcatcaatggtttcattttcac 6693803  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  6693802 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 6693726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 16255017 - 16254741
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||| |  || |||    
T  16255017 accaatgagatcttccaggttcatagattttaaatctttggcctaagtaattacagtgaccataggtctccacatacttggaagacatctcaatattttt 16254918  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    |||||||| |||||||| ||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16254917 ctgattctatcatgagtagaatatgcctttccaagagatctcatatcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 16254818  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  16254817 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 16254741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 275
Target Start/End: Original strand, 7845016 - 7845289
Alignment:
Q  2 ccaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatctttc 101  Q
    |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||  || ||||    
T  7845016 ccaatgagatcttctagattcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccatacacttggaagacatcttaatatttttc 7845115  T
Q  102 tgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcact 201  Q
    ||||||| |||| ||| |||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7845116 tgattctatcataagtagaataagcctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcact 7845215  T
Q  202 catttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgat 275  Q
    ||||||||| |||||||| ||||||||| |||| ||||||||||||||||||||| |||||||||| |||||||    
T  7845216 catttcaaaaacttcaaattttctgactccaatatcaattctagtttctttgacatgagatgtaccctcatgat 7845289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 17151157 - 17150881
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||| | | |||||||||||||||||  || |||    
T  17151157 accaatgagatcttccaggttcatagattataaatctttggcctgagtaattgcattgaccataggtctccaaacacttggaagacatcttaatattttt 17151058  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||   ||||||| ||||||  |||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17151057 ctaattcaaacatgagtagaatatgccttttcaagatatctcatttaatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 17150958  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  17150957 tcatttcaaagacttcaaattttctaactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 17150881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 252
Target Start/End: Original strand, 54698356 - 54698579
Alignment:
Q  29 tttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatctttctgattctctcatgagtggaatatttct 128  Q
    ||||| ||||| || || || |||||||| ||||| |||||| |  | ||||||||||||||||  || ||||| || |  |||||||||| |||  | |    
T  54698356 tttaagtctttagcttgtgtgattgcagttaccatgggtctccatgtgcttggaagacatcttaagatttttcttatccgatcatgagtggtataagttt 54698455  T
Q  129 ttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcactcatttcaaagacttcaaactttctgac 228  Q
    ||||||| ||||| | |||||| || || |  || ||||| |  ||||| ||||||||| | |||| |||  |||||||||||| |||||| ||||| ||    
T  54698456 ttccaagtgatcttaattcattcacaatagatgtgaatctggagtacatttcatcaatgttctcatcttcgttcatttcaaagatttcaaattttcttac 54698555  T
Q  229 ttcaatgtcaattctagtttcttt 252  Q
      ||||||| ||||| ||||||||    
T  54698556 gccaatgtctattcttgtttcttt 54698579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 26813688 - 26813465
Alignment:
Q  29 tttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatctttctgattctctcatgagtggaatatttct 128  Q
    ||||| ||||| || || || |||||||| ||||| |||||| |  | |||||||||||||||| ||| ||||| ||||  |||||||||| |||  | |    
T  26813688 tttaagtctttagcttgtgtgattgcagttaccatgggtctccatgtgcttggaagacatcttaaaatttttcttattcgatcatgagtggtataagttt 26813589  T
Q  129 ttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcactcatttcaaagacttcaaactttctgac 228  Q
    |||| || ||||| | |||||| || || |  || ||||| |  ||||| ||||||||| | |||| |||  ||||||| |||| |||||| ||||| ||    
T  26813588 ttcccagtgatcttaattcattcacaatagatgtgaatctggagtacatttcatcaatgttctcatcttcgttcatttcgaagatttcaaattttcttac 26813489  T
Q  229 ttcaatgtcaattctagtttcttt 252  Q
      |||| || ||||| ||||||||    
T  26813488 gccaatatctattcttgtttcttt 26813465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 9538919 - 9538643
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||    
T  9538919 accaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcagaattttt 9538820  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9538819 ctaattctatcatgagtggaatatgcctttccaagagatctcatttcatttactattgtagtaaatcttgcatacatctcatcaatggtttcattttcac 9538720  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  9538719 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 9538643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 8974630 - 8974354
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||| |||    
T  8974630 accaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacacacttggaagacatctcagaattttt 8974531  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8974530 ctaattctatcatgagtggaatatgcctttccaagagatctcatttcatttactattgtagtaaatcttgcatacatctcatcaatggtttcattttcac 8974431  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  8974430 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 8974354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 6424091 - 6423815
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| || || || |||    
T  6424091 accaatgagatcttccaggtttatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacacacttggaagacacctcagtattttt 6423992  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||| ||||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6423991 ctaattctatcatgagtagaatatgcatttccaagagatctcatttcatttactattgtagtaaatctggcatacatctcatcaatggtttcattttcac 6423892  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  6423891 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 6423815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 3 - 277
Target Start/End: Complemental strand, 12387769 - 12387495
Alignment:
Q  3 caatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatctttct 102  Q
    |||||||||||| || ||||||| ||| ||||| ||| |||||||||||||||||||||||||||||   |||||||||||| ||||| |  || |||||    
T  12387769 caatgagatcttccaagttcatatattgtaaatatttagcctgagtaattgcagtgaccataggtcttcgcatacttggaaggcatctcaatatttttct 12387670  T
Q  103 gattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcactc 202  Q
    || |||||||| ||||||||||  |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12387669 gactctctcataagtggaatatgcctttccaaaagatcttatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcactc 12387570  T
Q  203 atttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  12387569 atttcaaagacttccaactttatgacttcaatgtcaattctagtttctttgacatgagatgtaacttcatgatgt 12387495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 276
Target Start/End: Complemental strand, 48979979 - 48979781
Alignment:
Q  78 ttggaagacatcttagaatctttctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacat 177  Q
    |||||||||||||||| || ||||| ||||| || || || |||||  | |||||||| ||||| | |||||||||||| |  || |||||||  |||||    
T  48979979 ttggaagacatcttagtatttttcttattctgtcgtgggtagaataagtttttccaagtgatcttagttcatttactatagatgtgaatctagagtacat 48979880  T
Q  178 ctcatcaatggtttcattttcactcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatg 276  Q
     ||||||||| |||||| |||| |||||||||||| |||||||||||| ||  ||||||||||||| |||||||| ||| |   ||| |||||||||||    
T  48979879 ttcatcaatgttttcatcttcaatcatttcaaagatttcaaactttctcacaccaatgtcaattcttgtttctttaacatggcttgttccttcatgatg 48979781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 18653002 - 18652726
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||    
T  18653002 accaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcagaattttt 18652903  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18652902 ctaattctatcatgagtggaatatgcctttccaagagatctcatttcatttactattgtagtaaatcttgcatacatctcatcaatggtttcattttcac 18652803  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  18652802 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 18652726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 9512321 - 9512597
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||    
T  9512321 accaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcagaattttt 9512420  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9512421 ctaattctatcatgagtggaatatgcctttccaagagatctcatttcatttactattgtagtaaatcttgcatacatctcatcaatggtttcattttcac 9512520  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||| |||||||||| |||||||||    
T  9512521 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctctgacatgagatgtaccctcatgatgt 9512597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 27168543 - 27168819
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |  || |||    
T  27168543 accaatgagatcttccaggttcatagatttcaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcaatattttt 27168642  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27168643 ctgattctctcatgagtggaatatgcttttccaagagatctcatttcatttactattgtagtaaatctggcatacatctcatcaatggtttcattttcac 27168742  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||||||||||||||||||||    
T  27168743 tcatttcaaagacttcaaactttctgactccaatgtcaattctggtctctttgacatgagatgtaccttcatgatgt 27168819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 45016137 - 45015861
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || || |||    
T  45016137 accaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcagtattttt 45016038  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45016037 ctaattctatcatgagtagaatatgcatttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 45015938  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  45015937 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 45015861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 22903923 - 22903647
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| || |||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||| || || |  || |||    
T  22903923 accaatgagatcttccaagttcatagatttcaaatctttggcctgagtaattgcagttaccataggtctccacatacttggaaggcaactcaatattttt 22903824  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||    
T  22903823 ctgattatctcatgagtgaaatatgtctttccaagagatctcatttcatttactattgtaataaatctggcatacatctcatcaatggtttcattctcac 22903724  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  22903723 tcatttcaaagacttgaaactttctaactccaatgtcaattctagtttctttgacatgagatgtaccatcatgatgt 22903647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 276
Target Start/End: Complemental strand, 1792261 - 1792063
Alignment:
Q  78 ttggaagacatcttagaatctttctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacat 177  Q
    |||||||||||||||| || ||||| ||||| || || || |||||  | |||||||| ||||| | |||||||||||| |  || |||||||  |||||    
T  1792261 ttggaagacatcttagtatttttcttattctgtcgtgggtagaataagtttttccaagtgatcttagttcatttactatagatgtgaatctagagtacat 1792162  T
Q  178 ctcatcaatggtttcattttcactcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatg 276  Q
     ||||||||| |||||| |||| |||||||||||| |||||||||||| ||  ||||||||||||| |||||||| ||| |   ||| |||||||||||    
T  1792161 ttcatcaatgttttcatcttcaatcatttcaaagatttcaaactttctcacaccaatgtcaattcttgtttctttaacatggcttgttccttcatgatg 1792063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 7553 - 7277
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |  || |||    
T  7553 accaatgagatcttccaggttcatagatttcaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcaatattttt 7454  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7453 ctgattctctcatgagtggaatatgcttttccaagagatctcatttcatttactattgtagtaaatctggcatacatctcatcaatggtttcattttcac 7354  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  7353 tcatttcaaagacttcaaactttctgactccaatgtcaattctggtttctttgacatgagatgtaccttcatgatgt 7277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 11335 - 11059
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |  || |||    
T  11335 accaatgagatcttccaggttcatagatttcaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcaatattttt 11236  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11235 ctgattctctcatgagtggaatatgcttttccaagagatctcatttcatttactattgtagtaaatctggcatacatctcatcaatggtttcattttcac 11136  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  11135 tcatttcaaagacttcaaactttctgactccaatgtcaattctggtttctttgacatgagatgtaccttcatgatgt 11059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 21211527 - 21211803
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||    
T  21211527 accaatgagatcttccaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcagaattttt 21211626  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21211627 ctaattctatcatgagtggaatatgcctttccaagagatctcatttcatttactattgtagtaaatcttgcatacatctcatcaatggtttcattttcac 21211726  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||| ||||| |||||||||    
T  21211727 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagaagtaccctcatgatgt 21211803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 14892309 - 14892585
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||| |  || |||    
T  14892309 accaatgagatcttccaggttcatagattttaaatcttctgcctgagtaattgcagtgaccataggtctccacatacttggaagacatctcaatattttt 14892408  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||||| |||||||| ||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14892409 ctaattctatcatgagtagaatataccttttcaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatagtttcattttcac 14892508  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| |||||||||| |||||||||    
T  14892509 tcatttcaaagacttcaaattttctgactccaatgtcaattctggtttctttgacatgagatgtaccctcatgatgt 14892585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 22832523 - 22832247
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    ||||||||||||||  |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||| |||||||||||||  ||||||||    
T  22832523 accaatgagatcttcaaggttcatagatttcaaatctttggcctgagtgattgcagtgacgataggtctccacataattggaagacatctcggaatcttt 22832424  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    | |||||| |||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  22832423 ccgattctttcatgagtggaatatgccttttcaagagatctcatttcatttactattgtagtaaatctagcatacatctcataaatggtttcattctcac 22832324  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||| | ||||||||||||| || | ||||||||||||||||||| | ||||||||||||||||||||    
T  22832323 tcatttcaaagaccttaaactttctgactccattatcaattctagtttctttgatatgagatgtaccttcatgatgt 22832247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 207
Target Start/End: Complemental strand, 18234114 - 18233936
Alignment:
Q  29 tttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatctttctgattctctcatgagtggaatatttct 128  Q
    ||||| |||||||| ||||| ||||| || |||||||||||| |  || |||| ||||||||||  || ||||||||||| ||||||| ||||||| | |    
T  18234114 tttaagtctttggcttgagtgattgctgtaaccataggtctccatgtatttgggagacatcttaatatttttctgattctgtcatgaggggaatatattt 18234015  T
Q  129 ttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcactcatttc 207  Q
    |||| |  ||||| |  ||||| ||||| | ||| ||||  | |||||| ||||||||  |||| | ||||||||||||    
T  18234014 ttcccaatgatcttaactcattcactatagaagtgaatcgtgaatacatttcatcaatattttcttcttcactcatttc 18233936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 207
Target Start/End: Complemental strand, 18243565 - 18243387
Alignment:
Q  29 tttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatctttctgattctctcatgagtggaatatttct 128  Q
    ||||| |||||||| ||||| ||||| || |||||||||||| |  || |||| ||||||||||  || ||||||||||| ||||||| ||||||| | |    
T  18243565 tttaagtctttggcttgagtgattgctgtaaccataggtctccatgtatttgggagacatcttaatatttttctgattctgtcatgaggggaatatattt 18243466  T
Q  129 ttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcactcatttc 207  Q
    |||| |  ||||| |  ||||| ||||| | ||| ||||  | |||||| ||||||||  |||| | ||||||||||||    
T  18243465 ttcccaatgatcttaactcattcactatagaagtgaatcgtgaatacatttcatcaatattttcttcttcactcatttc 18243387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 1987746 - 1988022
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| ||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| ||||| |  || |||    
T  1987746 accaatgagatcttccagattcatagatttcaaatctttggcctgagtgatttcagtgaccataggtctccacatacttggaagtcatctcaatattttt 1987845  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1987846 ctgattctctcatgagtggaatatgcttttccaagagatctcatttcatttactattgtagtaaatctggcatacatctcatcaatggtttcattttcac 1987945  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  1987946 tcatttcaaagacttcaaactttctgactccaatgtcaattctggtttctttgacatgagatgtaccttcatgatgt 1988022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 16156667 - 16156391
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||| ||||||||||||||| || || |||    
T  16156667 accaatgagatcttccaggttcatagattttaaatcttttgcctgagtgattgcagtgaccataggtctccacacacttggaagacatctcagtattttt 16156568  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    || ||| | |||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16156567 ctaattttatcatgagtagaatatgcctttccaagagatctcatttcatttactattgtagtaaatctggcatacatctcatcaatggtttcattttcac 16156468  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  16156467 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 16156391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 29 - 277
Target Start/End: Complemental strand, 22960083 - 22959836
Alignment:
Q  29 tttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatctttctgattctctcatgagtggaatatttct 128  Q
    |||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| ||||| |||||||| |||||||||| ||||   |    
T  22960083 tttaaatctttggcttgagtaattgcagtgaccataggtctccatatacttggaagacatcttagtatcttcctgattctatcatgagtggtatatactt 22959984  T
Q  129 ttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcactcatttcaaagacttcaaactttctgac 228  Q
    | || ||| ||||||||||||| |||||||| || |||||| ||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  22959983 tgcccagatatctcatttcattcactattgttgtgaatctatcatacatttcatcaatggtttcattttcactcatttcaaagatttc-aactttctgac 22959885  T
Q  229 ttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    | ||||||||||||| ||||||| |||| |||  || ||||||||||||    
T  22959884 tccaatgtcaattcttgtttcttcgacatgagtggttccttcatgatgt 22959836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 25426991 - 25427039
Alignment:
Q  208 aaagacttcaaactttctgacttcaatgtcaattctagtttctttgaca 256  Q
    ||||| |||||||||||| ||| ||||||||||||| |||||| |||||    
T  25426991 aaagatttcaaactttctcactacaatgtcaattcttgtttctctgaca 25427039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 2 - 277
Target Start/End: Original strand, 53090 - 53363
Alignment:
Q  2 ccaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatctttc 101  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    || ||||    
T  53090 ccaatgagatcttcgaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctccatatacttggaagacatctct--atttttc 53187  T
Q  102 tgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcact 201  Q
    ||||||| |||||||| ||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53188 tgattctatcatgagtagaatatgcctttccaagagatctcatatcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcact 53287  T
Q  202 catttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  53288 catttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgt 53363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 148492 - 148216
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    |||||||||||| |  |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||  || |||    
T  148492 accaatgagatcctctaggttcatagattttaaatctttggcctgagtgattgcagtgaccataggtctccacacacttggaagacatcttaatattttt 148393  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    |||||||| ||||||||  |||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  148392 ctgattctatcatgagtataatatgccttttcaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatagtttcattttcac 148293  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||| ||||| |||||||||    
T  148292 tcatttcaaagacttcaaattttctgactccaatgtcaattctagtttctttgacatgagaagtaccctcatgatgt 148216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 54 - 277
Target Start/End: Complemental strand, 20506 - 20283
Alignment:
Q  54 cagtgaccataggtctctacatacttggaagacatcttagaatctttctgattctctcatgagtggaatatttctttccaagagatctcatttcatttac 153  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  20506 cagtgaccataggtctccacattcttggaagacatcttagaatctttctgattctctcatgagtggaatatgcctttccaagagatctcatttcatttac 20407  T
Q  154 tattgtagtaaatctagcatacatctcatcaatggtttcattttcactcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttg 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||    
T  20406 tattgtagtaaatctagcatacatctcatcaatggtttcattttcactcatttcaaagagttcaaactttctgactccaatgtcaattctagttcctttg 20307  T
Q  254 acaagagatgtaccttcatgatgt 277  Q
    ||| |||||||||||| |||||||    
T  20306 acatgagatgtacctttatgatgt 20283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 27729 - 27670
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgac 60  Q
    |||||||||||||| |||||||||||||||||||||||||  ||||||||||| ||||||    
T  27729 accaatgagatcttccaggttcatagattttaaatctttgatctgagtaattgtagtgac 27670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0529 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0529
Description:

Target: scaffold0529; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 290 - 33
Alignment:
Q  20 ttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatctttctgattctctcatgagtgg 119  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |  || ||||| ||||| ||||||||||    
T  290 ttcatagatttcaaatctttggcctgagtgattgcagtgaccataggtctccacatacttggaagacatctcattatttttcttattctttcatgagtgg 191  T
Q  120 aatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcactcatttcaaagacttcaaa 219  Q
    |||||   |||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  190 aatatgcttttctaagagatctcatttcatttactattgtagtaaatctttcatacatctcatcaatggtttcattttcactcatttcaaagacttcaaa 91  T
Q  220 ctttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    |||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  90 ctttctaactccaatgtcaattctagtttctttgacatgagatgtaccttcatgatgt 33  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 17003 - 16739
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatcttt 100  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||    ||||||||||| |||||||||     ||||| |  || |||    
T  17003 accaatgagatcttcaaggttcatagattttaaatctttggcctgagtaattgcat---ccataggtctccacatacttg-----catctcaatattttt 16912  T
Q  101 ctgattctctcatgagtggaatatttctttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcac 200  Q
    |||||||| |||||||||||||||   |||| |||||| ||||| ||||||||||||||||||||||||  |||||| |||||||| |||||||| ||||    
T  16911 ctgattctttcatgagtggaatatacttttcgaagagacctcatctcatttactattgtagtaaatctaaaatacatttcatcaatagtttcattctcac 16812  T
Q  201 tcatttcaaagacttcaaactttctgacttcaatgtcaattctagtttctttgacaagagatgtaccttcatg 273  Q
    ||||||||||||||||| ||||||||||| | |||| |||||| ||||| |||||| |||| |||||||||||    
T  16811 tcatttcaaagacttcacactttctgactcctatgttaattctggtttccttgacatgagaggtaccttcatg 16739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 29 - 277
Target Start/End: Original strand, 189112 - 189359
Alignment:
Q  29 tttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatctttctgattctctcatgagtggaatatttct 128  Q
    |||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||| ||||| || ||||| |||||||||  ||||   |    
T  189112 tttaaatctttggcttgagtaattgcagtgaccataggcctccatgtacttggaagacatcttagtatcttcctaattctatcatgagtgctatatactt 189211  T
Q  129 ttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcactcatttcaaagacttcaaactttctgac 228  Q
    | || ||| ||||||||||||| |||||||| || |||||| |||| || | |||||||||||||||||||||||||||||||| ||| |||||||||||    
T  189212 tgcccagatatctcatttcattcactattgttgtgaatctatcatatattttatcaatggtttcattttcactcatttcaaagatttc-aactttctgac 189310  T
Q  229 ttcaatgtcaattctagtttctttgacaagagatgtaccttcatgatgt 277  Q
    | ||||||||||||| ||||||| |||| |||| || ||||||||||||    
T  189311 tccaatgtcaattcttgtttcttcgacatgagaggttccttcatgatgt 189359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0611 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0611
Description:

Target: scaffold0611; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 102 - 13
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatct 90  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||    
T  102 accaatgagatcttccaggttcatagattttaaatctttggcctaagtaattgcagtgaccataggtctccaaatacttggaagacatct 13  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 87083 - 87142
Alignment:
Q  1 accaatgagatctttcaggttcatagattttaaatctttggcctgagtaattgcagtgac 60  Q
    |||||||||||||| |||||||||||||||||||||||||  ||||||||||| ||||||    
T  87083 accaatgagatcttccaggttcatagattttaaatctttgatctgagtaattgtagtgac 87142  T

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Target: scaffold0028 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 252
Target Start/End: Original strand, 102870 - 103093
Alignment:
Q  29 tttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatctttctgattctctcatgagtggaatatttct 128  Q
    ||||| ||||| || || || |||||||| ||||| |||||| |  | ||||||||||||||||  || ||||| || |  |||||||||| |||  | |    
T  102870 tttaagtctttagcttgtgtgattgcagttaccatgggtctccatgtgcttggaagacatcttaagatttttcttatccgatcatgagtggtataagttt 102969  T
Q  129 ttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcactcatttcaaagacttcaaactttctgac 228  Q
    ||||||| ||||| | |||||| || || |  || ||||| |  ||||| ||||||||| | |||| |||  |||||||||||| |||||| ||||| ||    
T  102970 ttccaagtgatcttaattcattcacaatagatgtgaatctggagtacatttcatcaatgttctcatcttcgttcatttcaaagatttcaaattttcttac 103069  T
Q  229 ttcaatgtcaattctagtttcttt 252  Q
      ||||||| ||||| ||||||||    
T  103070 gccaatgtctattcttgtttcttt 103093  T

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Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 207
Target Start/End: Complemental strand, 258253 - 258075
Alignment:
Q  29 tttaaatctttggcctgagtaattgcagtgaccataggtctctacatacttggaagacatcttagaatctttctgattctctcatgagtggaatatttct 128  Q
    ||||| |||||||| ||||| ||||| || |||||||||||| |  |  |||| ||||||||||  || ||||||||||| ||||||| ||||||| | |    
T  258253 tttaagtctttggcttgagtgattgctgtaaccataggtctccatgtttttgggagacatcttaatatttttctgattctgtcatgaggggaatatattt 258154  T
Q  129 ttccaagagatctcatttcatttactattgtagtaaatctagcatacatctcatcaatggtttcattttcactcatttc 207  Q
    |||| |  ||||| |  ||||| ||||| | ||| ||||  | |||||| ||||||||  |||| | ||||||||||||    
T  258153 ttcccaatgatcttaactcattcactatagaagtgaatcgtgaatacatttcatcaatattttcttcttcactcatttc 258075  T

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