View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8893_low_62 (Length: 273)
Name: NF8893_low_62
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8893_low_62 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 45713753 - 45713996
Alignment:
| Q |
14 |
tggacatcaaagaggctcttcaacagattgaagaattgaaagaaacaacgattgatggaggagaatactcttcctcccttatcacctctaccgaaaggga |
113 |
Q |
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| T |
45713753 |
tggacatcaaagaggctcttcaacagattgaagaattgaaagaaacaacaattgatggaggagaatactcttcctcccttatcacctctaccgaaaggga |
45713852 |
T |
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| Q |
114 |
tgcttacagagctgtgtgatttcctcattaacatcaatccaatccaatatatgcaattaa-ttaaccttgaattaattctttctacatctttttcttgtt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
45713853 |
tgcttacagagctgtgtgatttcctcattaacatcaatccaatccaatatatgcaattaatttaaccttgaattaattttttctacatctttttcttgtt |
45713952 |
T |
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| Q |
213 |
aatacatagcataggtatttgcagtgatttttcaaccccacatt |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45713953 |
aatacatagcataggtatttgcagtgatttttcaaccccacatt |
45713996 |
T |
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