View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8893_low_63 (Length: 270)
Name: NF8893_low_63
Description: NF8893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8893_low_63 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 9161630 - 9161872
Alignment:
| Q |
17 |
acatcacttttctctgttaattgatgtgtttgcatatactccggatctaagtatccaagagttccttgtaccattgttgctatctcggtttgatcaagtg |
116 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9161630 |
acatcacttttctctgttagttgatgtgtttgcatatactccggatctaagtaaccaagagttccttgtaccattgttgctatctcggtttgatcaagtg |
9161729 |
T |
|
| Q |
117 |
gaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaataataggtattga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
9161730 |
gaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtactcttaacatctctatggataataggtattga |
9161829 |
T |
|
| Q |
217 |
tgcagatgaatgtaaatacgataaagctccggctgtctctgct |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9161830 |
tgcagatgaatgtaaatacgataaagctccggctgtctctgct |
9161872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 9155717 - 9155960
Alignment:
| Q |
16 |
gacatcacttttctctgttaattgatgtgtttgcatatactccggatctaagtatccaagagttccttgtaccattgttgctatctcggtttgatcaagt |
115 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9155717 |
gacatcacttttctcggttaattgatgagtttgcatatactctggatctaggtatccaagagttccttgaaccattgttgctatctcggtttgatcaagt |
9155816 |
T |
|
| Q |
116 |
ggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaataataggtattg |
215 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| || ||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||| |
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|
| T |
9155817 |
ggaactaacctcgaagctccaaaatcggaaactttcgctgtgtaattgtcatccaagagaatgttggtacttttgacatctctatggataatcggtattg |
9155916 |
T |
|
| Q |
216 |
atgcagatgaatgtaaatacgataaagctccggctgtctctgct |
259 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9155917 |
atgcagatgaatgtagatacgataaagctccggctgtctctgct |
9155960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 9218539 - 9218781
Alignment:
| Q |
17 |
acatcacttttctctgttaattgatgtgtttgcatatactccggatctaagtatccaagagttccttgtaccattgttgctatctcggtttgatcaagtg |
116 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9218539 |
acatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttccttgtaccattgtcgctatctcggtttgatcaagtg |
9218638 |
T |
|
| Q |
117 |
gaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaataataggtattga |
216 |
Q |
| |
|
||||||| || |||||||| || || |||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| ||||| || ||||| |
|
|
| T |
9218639 |
gaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatggataattggaattga |
9218738 |
T |
|
| Q |
217 |
tgcagatgaatgtaaatacgataaagctccggctgtctctgct |
259 |
Q |
| |
|
||||| |||||||| ||| |||||||| || |||||||||||| |
|
|
| T |
9218739 |
tgcagctgaatgtagatatgataaagcaccagctgtctctgct |
9218781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 9118822 - 9118580
Alignment:
| Q |
17 |
acatcacttttctctgttaattgatgtgtttgcatatactccggatctaagtatccaagagttccttgtaccattgttgctatctcggtttgatcaagtg |
116 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| ||||| || |||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9118822 |
acatcacttttctcggttaattgatgcgtttgcatgtactctgggtctaagtatccaagtgttccttgtaccactgttgctatctcggtttgatcaagtg |
9118723 |
T |
|
| Q |
117 |
gaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaataataggtattga |
216 |
Q |
| |
|
||||||| | |||||||| ||||| |||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| ||||| || | ||| |
|
|
| T |
9118722 |
gaaccaatttggaagctccgaaatcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatggataattggaaatga |
9118623 |
T |
|
| Q |
217 |
tgcagatgaatgtaaatacgataaagctccggctgtctctgct |
259 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
9118622 |
tgcagatgaatgtagatacgataaagctccagctgtctctgct |
9118580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 9170456 - 9170698
Alignment:
| Q |
17 |
acatcacttttctctgttaattgatgtgtttgcatatactccggatctaagtatccaagagttccttgtaccattgttgctatctcggtttgatcaagtg |
116 |
Q |
| |
|
||||||||||| || ||||||| |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
9170456 |
acatcacttttttcggttaatttatgtgtttgcatatactcgggatctaagtatccaagtgttccttgcaccattgttgctatctctgtttgatcaagtg |
9170555 |
T |
|
| Q |
117 |
gaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaataataggtattga |
216 |
Q |
| |
|
||||||| || |||||||| || || |||||||| ||| ||||||||||||| ||||||||||||||||| |||||||||||||| ||||| || ||||| |
|
|
| T |
9170556 |
gaaccaatcttgaagctccgaagtcggaaactttggcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatggataattggaattga |
9170655 |
T |
|
| Q |
217 |
tgcagatgaatgtaaatacgataaagctccggctgtctctgct |
259 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
9170656 |
tgcagatgaatgtagatacgataaagctccagctgtctctgct |
9170698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 9200023 - 9200261
Alignment:
| Q |
17 |
acatcacttttctctgttaattgatgtgtttgcatatactccggatctaagtatccaagagttccttgtaccattgttgctatctcggtttgatcaagtg |
116 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
9200023 |
acatcacttttctcggttagttgatgtgtttgcatatactcgggatctaagtatccaagtgttccttgcaccattgttgctatctctgtttgatcaagtg |
9200122 |
T |
|
| Q |
117 |
gaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaataataggtattga |
216 |
Q |
| |
|
||||||| || ||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| || ||||| || ||||| |
|
|
| T |
9200123 |
gaaccaatctggaagctccaaagtcagaaacttttgcggtgtaattgtcatccaagagaatgttggtactcttaacatctctgtggataattggaattga |
9200222 |
T |
|
| Q |
217 |
tgcagatgaatgtaaatacgataaagctccggctgtctc |
255 |
Q |
| |
|
||||| |||||||| ||| ||||||||||| |||||||| |
|
|
| T |
9200223 |
tgcagctgaatgtagatatgataaagctccagctgtctc |
9200261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 9229424 - 9229653
Alignment:
| Q |
17 |
acatcacttttctctgttaattgatgtgtttgcatatactccggatctaagtatccaagagttccttgtaccattgttgctatctcggtttgatcaagtg |
116 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||| || |||||||| || ||||||||||||||||||| || |||||| || |||||||||| |
|
|
| T |
9229424 |
acatcacttttctctgttagttggtgtgtttgcatatattctggatctaaatagccaagagttccttgtaccacagtggctatcatagtatgatcaagtg |
9229523 |
T |
|
| Q |
117 |
gaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaataataggtattga |
216 |
Q |
| |
|
||||||| || ||||| ||||||||||| ||||||||| ||||||||||||| ||||||||||||| |||||| ||||||||||| ||||| |||| || |
|
|
| T |
9229524 |
gaaccaatcttgaagcaccaaaatcagacacttttgcagtgtaattgtcatccaagagaatgttggcacttttgacatctctatggataattggtaagga |
9229623 |
T |
|
| Q |
217 |
tgcagatgaatgtaaatacgataaagctcc |
246 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| |
|
|
| T |
9229624 |
tgcagatgaatgtagatatgataaagctcc |
9229653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 1868835 - 1868607
Alignment:
| Q |
16 |
gacatcacttttctctgttaattgatgtgtttgcatatactccggatctaagtatccaagagttccttgtaccattgttgctatctcggtttgatcaagt |
115 |
Q |
| |
|
|||||||||||| || ||||||||| ||||||||||||||| ||||||||||| |||| ||||||||| |||||||| ||||| || |||||||||||| |
|
|
| T |
1868835 |
gacatcacttttttcagttaattgacttgtttgcatatactctggatctaagtagccaatagttccttgcaccattgtggctatttcagtttgatcaagt |
1868736 |
T |
|
| Q |
116 |
ggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaataataggtattg |
215 |
Q |
| |
|
|||||||| || |||||||||||||| || ||||| || ||| | ||||||||||||||| ||| || ||||||||||| || || ||||||| |
|
|
| T |
1868735 |
ggaaccaatcttgaagctccaaaatccgatactttggcggtgttggttctatctaagagaatgttatcactcttgacatctctatggatgatgggtattg |
1868636 |
T |
|
| Q |
216 |
atgcagatgaatgtaaatacgataaagct |
244 |
Q |
| |
|
| ||| ||||||||| ||| || |||||| |
|
|
| T |
1868635 |
aggcatatgaatgtagatatgacaaagct |
1868607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 1857237 - 1857023
Alignment:
| Q |
16 |
gacatcacttttctctgttaattgatgtgtttgcatatactccggatctaagtatccaagagttccttgtaccattgttgctatctcggtttgatcaagt |
115 |
Q |
| |
|
|||||||||||| || ||||||||| ||||||||||||||| ||||||||||| |||| ||||||||| |||||||| ||||| || |||||||||||| |
|
|
| T |
1857237 |
gacatcacttttttcagttaattgacttgtttgcatatactctggatctaagtagccaatagttccttgcaccattgtggctatttcagtttgatcaagt |
1857138 |
T |
|
| Q |
116 |
ggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaataataggtattg |
215 |
Q |
| |
|
|||||||| || |||||||||||||| || ||||| || ||| | |||||||||||||||| ||| || ||||||||||| || || ||| ||| |
|
|
| T |
1857137 |
ggaaccaatcttgaagctccaaaatccgacactttggcggtgttggttccatctaagagaatgttatcactcttgacatctctatggatgatgggtgttg |
1857038 |
T |
|
| Q |
216 |
atgcagatgaatgta |
230 |
Q |
| |
|
| ||| ||||||||| |
|
|
| T |
1857037 |
aggcatatgaatgta |
1857023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 1815808 - 1816019
Alignment:
| Q |
17 |
acatcacttttctctgttaattgatgtgtttgcatatactccggatctaagtatccaagagttccttgtaccattgttgctatctcggtttgatcaagtg |
116 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||| ||||| ||||| |||| ||||||||| |||||||| |||| || ||||||||||||| |
|
|
| T |
1815808 |
acatcacttttctcagttaattggcttgtttgcatatactctggatccaagtagccaatagttccttgcaccattgtggctacttcagtttgatcaagtg |
1815907 |
T |
|
| Q |
117 |
gaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaataataggtattga |
216 |
Q |
| |
|
||| |||||| || ||||||||||| || ||||| || ||| | |||||||||||||||| | ||| || ||||||||||| ||||| |||||||| |
|
|
| T |
1815908 |
gaatcaaccttgatgctccaaaatctgacactttagcggtgttggttccatctaagagaatgttagcactcttgacatctctatggataatgggtattga |
1816007 |
T |
|
| Q |
217 |
tgcagatgaatg |
228 |
Q |
| |
|
|||| |||||| |
|
|
| T |
1816008 |
ggcagctgaatg |
1816019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 1843226 - 1843012
Alignment:
| Q |
16 |
gacatcacttttctctgttaattgatgtgtttgcatatactccggatctaagtatccaagagttccttgtaccattgttgctatctcggtttgatcaagt |
115 |
Q |
| |
|
|||||||||||| || ||||||||| ||||||||||||||| ||||||||||| |||| ||||||||| |||||||| ||||| || |||||||||| | |
|
|
| T |
1843226 |
gacatcacttttttcagttaattgacttgtttgcatatactctggatctaagtagccaatagttccttgcaccattgtggctatttcagtttgatcaatt |
1843127 |
T |
|
| Q |
116 |
ggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaataataggtattg |
215 |
Q |
| |
|
|||||||| || |||||||||||||| || ||||| || ||| | ||||||||||||||| ||| || ||||||||||| || || ||||||| |
|
|
| T |
1843126 |
ggaaccaatcttgaagctccaaaatctgatactttggctgtgttggttctatctaagagaatgttatcactcttgacatctctatggattattggtattg |
1843027 |
T |
|
| Q |
216 |
atgcagatgaatgta |
230 |
Q |
| |
|
| ||| ||||||||| |
|
|
| T |
1843026 |
aggcatatgaatgta |
1843012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 204
Target Start/End: Complemental strand, 40602256 - 40602159
Alignment:
| Q |
107 |
tgatcaagtggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaat |
204 |
Q |
| |
|
|||||||| ||||| | | | |||||||||||||||||||| |||||| || |||| |||||| ||| ||||| ||| ||| | |||||||||||| |
|
|
| T |
40602256 |
tgatcaagaggaacaatctttgaagctccaaaatcagaaacctttgcaatgagattgccatctaggaggatgtttgtagattttatatctctatgaat |
40602159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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